mRNA_S-ischiensis_contig9.20822.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20822.1
Unique NamemRNA_S-ischiensis_contig9.20822.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Match: A0A835YNN2_9STRA (FeThRed_A domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.200e-24
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 2 
Query:  179 KRAVPRGAATMDFGWVDFTHNPQEVAVGDTVKVIAKGLKFYHIKAYKDEGFDPEGLEGEVTKIKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLEVDK 481
            +R   RG+  +     DF  NPQ + VG +V+V+A   +FYHI+ +KDEG D  G EG + +IKL S+K  +E+T+NRPV+V F EP+KFIAHFEF E+++
Sbjct:   15 RRGGGRGSGALAMA-SDFQDNPQGLEVGQSVRVLAMEQRFYHIQQFKDEGLDATGFEGVIKEIKLTSKKTGAEITANRPVLVTFTEPYKFIAHFEFEELER 114
[Close]
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Match: A0A6V1JJ49_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1JJ49_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 5.940e-13
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 2 
Query:  188 VPRGAATMDFGWVD-FTHNPQEVAVGDTVKVIAKGLKFYHIKAYKDEGFDPEGLEGEVTKIKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLEVDKLS 487
             P+  A M   W D    + +   +GD VKV     K +H+  Y++EG   +G EG +T I L S K   E+T N P++V+F EP KF AHF F EVDKLS
Sbjct:   38 APKPRAPMRTIWFDPEVDDTKGFGLGDRVKVKID-QKLWHVNGYREEGLQIQGAEGTITNIWLRSRKGFKEITVNLPLVVEFEEPVKFKAHFNFDEVDKLS 137
[Close]
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Match: A0A4D9D7A8_9STRA (FeThRed_A domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7A8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.170e-10
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 2 
Query:   38 LFVLLVAVGCLFLLNPPSTNAFVAMGTGALR-----PGLRSWDTRSQWPRLGKRAVPRGAAT----------MDFGWV------DFTHNPQEVAVGDTVKVIAKGLKFYHIKAYKDEGFDPEGLEGEVTKIKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLEVDKL 484
            L VLL +V   +L   P    FV + TGA R      GLR    R +    G+R +  GA+           +D G+       DF +NP  +  G+ V++IA    FY I     EG +P+G +G VT +K ++ +     ++NRPV+V+F +P+KF+ HFEF EV ++
Sbjct:   54 LAVLLASVVACWL--TPCAQGFV-LTTGAARGLKRTEGLRVGGLREE---EGRRRIRAGASAAPPLVRLQLQLDLGFGAEEEGGDF-YNPDGIKEGELVEIIADST-FYSIPKAPKEGVNPKGFQGTVTMLK-FTARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 214
[Close]
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Match: A0A835YJJ2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.200e-10
Identity = 50/152 (32.89%), Postives = 63/152 (41.45%), Query Frame = 2 
Query:  194 RGAATMDFGWVDFTHNPQEVAVGDTVKVIAKGLKFYHIKAYKDEGFDPEGLEGEVTK--------------------------------------------------------IKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLEVDK 481
            RGA  M     DF  N   +A+GD V+V     +FYHI+A+KD+G D  G EGEV                                                          IKL S+K   E+T+NRPVMV F  P KF+AHFEF E+D+
Sbjct:   63 RGALAMAN---DFQDNALGIAIGDRVRVKQMEQRFYHIQAFKDDGLDATGFEGEVKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSAXXXXXXXXXXXXXXXXXIKLVSKKTGKEITANRPVMVAFTAPHKFMAHFEFDELDR 211
[Close]
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Match: A0A0G4G9L5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G9L5_9ALVE)

HSP 1 Score: 66.2 bits (160), Expect = 6.920e-9
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 2 
Query:  260 GDTVKVIAKGLKFYHIKAYKDEGFDPEGLEGEVTKIKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLEVDKLS*QGVSRQALREWPPRKRDDGSHGPRPLQSRYNLAAAGGLLGI 613
            GD VKV +  L+F+H K +K  GF+PEGLEG V +I+   +     L+ +RP++V+F  P  F AHFE  E+ K++            P + R DG H  R   + +     GG L +
Sbjct:   96 GDVVKVESGDLRFWHKKQWKATGFNPEGLEGTVVRIR---QDPAGILSPDRPIVVEFSTPLPFKAHFEASEIKKIA----------AAPDKCRCDG-HEERGSCASHTRTGGGGFLDV 199
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YNN2_9STRA4.200e-2448.51FeThRed_A domain-containing protein n=1 Tax=Tribon... [more]
A0A6V1JJ49_HETAK5.940e-1342.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D7A8_9STRA5.170e-1033.53FeThRed_A domain-containing protein n=2 Tax=Monodo... [more]
A0A835YJJ2_9STRA5.200e-1032.89Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A0G4G9L5_9ALVE6.920e-935.59Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3522179..3530888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003360.1
Exons5
Model size710
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817404.380502-UTR-S-ischiensis_contig9:3522178..35223981622817404.380502-UTR-S-ischiensis_contig9:3522178..3522398Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3522179..3522398 -
1695741089.391248-UTR-S-ischiensis_contig9:3522178..35223981695741089.391248-UTR-S-ischiensis_contig9:3522178..3522398Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3522179..3522398 -
1622817404.4727864-UTR-S-ischiensis_contig9:3530866..35308881622817404.4727864-UTR-S-ischiensis_contig9:3530866..3530888Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3530867..3530888 -
1695741089.4576118-UTR-S-ischiensis_contig9:3530866..35308881695741089.4576118-UTR-S-ischiensis_contig9:3530866..3530888Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3530867..3530888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817404.3955488-CDS-S-ischiensis_contig9:3522398..35224551622817404.3955488-CDS-S-ischiensis_contig9:3522398..3522455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3522399..3522455 -
1695741089.402006-CDS-S-ischiensis_contig9:3522398..35224551695741089.402006-CDS-S-ischiensis_contig9:3522398..3522455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3522399..3522455 -
1622817404.4130647-CDS-S-ischiensis_contig9:3525401..35255151622817404.4130647-CDS-S-ischiensis_contig9:3525401..3525515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3525402..3525515 -
1695741089.4134924-CDS-S-ischiensis_contig9:3525401..35255151695741089.4134924-CDS-S-ischiensis_contig9:3525401..3525515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3525402..3525515 -
1622817404.4294798-CDS-S-ischiensis_contig9:3529798..35299351622817404.4294798-CDS-S-ischiensis_contig9:3529798..3529935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3529799..3529935 -
1695741089.424153-CDS-S-ischiensis_contig9:3529798..35299351695741089.424153-CDS-S-ischiensis_contig9:3529798..3529935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3529799..3529935 -
1622817404.4435987-CDS-S-ischiensis_contig9:3530430..35305491622817404.4435987-CDS-S-ischiensis_contig9:3530430..3530549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3530431..3530549 -
1695741089.4336364-CDS-S-ischiensis_contig9:3530430..35305491695741089.4336364-CDS-S-ischiensis_contig9:3530430..3530549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3530431..3530549 -
1622817404.4584625-CDS-S-ischiensis_contig9:3530825..35308661622817404.4584625-CDS-S-ischiensis_contig9:3530825..3530866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3530826..3530866 -
1695741089.4472308-CDS-S-ischiensis_contig9:3530825..35308661695741089.4472308-CDS-S-ischiensis_contig9:3530825..3530866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3530826..3530866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20822.1prot_S-ischiensis_contig9.20822.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3522399..3530866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20822.1

>prot_S-ischiensis_contig9.20822.1 ID=prot_S-ischiensis_contig9.20822.1|Name=mRNA_S-ischiensis_contig9.20822.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
MIASRLFVLLVAVGCLFLLNPPSTNAFVAMGTGALRPGLRSWDTRSQWPR
LGKRAVPRGAATMDFGWVDFTHNPQEVAVGDTVKVIAKGLKFYHIKAYKD
EGFDPEGLEGEVTKIKLWSEKYQSELTSNRPVMVQFMEPFKFIAHFEFLE
VDKLS*
back to top

mRNA from alignment at S-ischiensis_contig9:3522179..3530888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20822.1 ID=mRNA_S-ischiensis_contig9.20822.1|Name=mRNA_S-ischiensis_contig9.20822.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8710bp|location=Sequence derived from alignment at S-ischiensis_contig9:3522179..3530888- (Schizocladia ischiensis KU_0333)
CGGAGCCGCTTCCAGGGGAAGCATGATTGCCTCCAGGTTATTCGTCCTGC
TCGTGGCCGTGGGGTGAGTTCCTTCATAAGCGTCCGGAAGAGAGGCTTGC
CCGCGATGGCCCGTCAGTGCGTGAGCCATGGAAGAGCTGCACCTCCTGTT
GCAGGGCCGGCAGACGTCACGGCAATGCACGGCTGGACAAGACGCGTTGC
CTAGGTTTTGGGGTGATTCTTCAGTGCGAACCCGGGTCTGGACGCCGGGC
CATCCTTGCTGTGTGGGGGGACGTGCTGCTTTCGTGGGCCGGCTGATACC
ACGTAACCAACTATCCCCCGTCCCCGTCTGCTGGAACAGGTGCCTCTTTT
TGCTTAATCCCCCGAGCACGAATGCATTCGTCGCCATGGGCACTGGGGCT
CTGCGACCTGGATTGCGCAGCTGGGACACACGGAGCCAATGGCCGCGTTT
GGGCAAGCGTGAGTGGCTATTTGAACCCAACTTTTTTGGTTGGGCAAACA
TGTCATGCAGTGTGCCGTGCATCTCTGGTATGTCCTCTTGTTTTTTCTGC
TTGCGTGTATCATGGGGACTGTCCCTTGGAAGGATGGTCTTGATGTGACC
TCCATTCCCTCACCCCCCCCCCCCCACTGAGTATATGCGGCAATACGGGC
CCCCAACTGTGCGGTTGGCCACTCCCCCCCGTAGAAGCACAAGCTTTGTT
TCGAGCCTCCCGGGGTTGCCTCAAGCGAGCCCGGACGCGAAAATTCTGCG
TGTCATCGTGTGTTTGACCTTCTGCTGTAGCGGACCCTAGTAGTAGGGGG
CACGATATGGCTCGAGACCACTACTGTAGTGCCCCCAGCACTGCATGCAC
GGCGCTTCAACAACGCCCTTTCTGCGTGCTCAAGCCCTCCCTGCGTCTGT
TCTTTCGGTCGGCCGCCCCTTCACGTGATGCGTATGCGCCATACGCGTCG
CAGGGGCCGTGCCACGCGGGGCAGCGACGATGGATTTCGGGTGGGTGGAC
TTCACACACAACCCGCAGGAGGTGGCCGTGGGGGACACAGTGAAAGTCAT
TGCCAAGGGGTTGAAATTCTACCACATTAAGGCCTACAAGGTGAGTGCGG
ACACACATGCGCGCGCGTGCATGCGTGCGTGCGTGTGTGCGTGCGTGTGT
GCGCGCACGTGCGCACGTCTGAGAGGTGCATACACTCTTGGTGTGCGACG
CTCTTCTTTCCGCAAGGCAGCCGCTCGGGCAGGTGTAGTTTCGACAGTAT
GTATGTACCCGTTGGCTCATCTTGCGACATAACCTTGCAAGGCGTGCTTG
GCCGGCAGCCCTAAGTCGATACTTCGCGGTCACCCTCCGACAGGAGTAGC
TATTCAGCCATGGACTCTCGCACCCCAACTAGGCTGGGACGGAGCATGCC
GGGTTTGCGCCGGCCAGGCCGCGCACTGGCCAAGCCCGGAATGCCATGAT
GGCTTGGTGTTGGCAAGCCGGATGAGGGGCCGCTCGCTAGACTATGACAA
AGCGTAGCGGTCGTCGAGTACTTGTGTGAGTCTCTGCGCAGAGTTGCTCT
TGGACCCCTGGCACCCCTGCCGGTCACGGGAGGAACAACCAGGACGATTG
ACCCCGACCGCTAAGTAGGTCACCAGACAATGCACGTAGGATCGAAGGTA
GATAGTCAATGGCTAAATAAATACTTCGAAGTAGCTACTGTAGCACTTGC
AAGTACAGTAGGTACCGCCGTGGCAGAGCAAACCCGAAGTTTCGACTTAG
GGCTGTCGGCATTGCACGCAAGGTTGTCGCAAGACAGGCCAATGAGTACA
TATATATGCTGCCATGGGAGGGCAAGCCGAAGTTGAATTCCGGTCTGTGG
ACAGAGCATGCACGCATGGCTGTGTCGGAGGACAAGTCAATGAAATGTGC
CGTGTACGAAGTATATATAGGGTTGCTCCATCTCGACCGAGGCGCGTGGT
CAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACATATATACAGGG
CGCGTGGTCAGCGGTCTCTGGACTACGGCAAGCACAGCATGAGTACTCTA
CACATATAGGGCGGGAGGTAGATTGCAGCGTCTTGATCAAGGCACGTGGT
CAATGGTCTCTGGACTATGGGAAGCACAAGGTGAGGACATATAGATATAC
TACTCGTACAGCATATATATACAATGTACTCACGTGGTGCTGGCCGTAGT
TCCGAGACCATTGACCCCGCGCCTCGTTCGAGACGGAGCAGGACCCCTCC
CTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGTCCACCCCCCCGCCAGAG
GCGGAGGGGCGGCCAAGTCCATACCCCCCCAATCCCAGACTCGTGAGAGT
CCGGGTGGGGGGGGGGCCTTCCCTGCTCGACCTAGGCCTAGCGGGAGAGG
GGGTTCCCTCGCCGTGCCGGGACACGGCGGGGGGAGATCCAAGATGCCCA
TCTATGGTACCTACTCGCTCCAACCGGGCACTCCACATCGACACAAGAAA
AGCTTTCACAGCACGCCCTACACGACTCTGCTCCTCCGCTGGCCAACCAG
ACATCTCACCTGATGGGTCCAGGAGGGTGATGACCTGATGGCGAGGGGTT
GAGTTCCTAAAACGTTTGCAAGTATTTTCCGGGAGGGCGGCTTTGAGCGC
TGCGTGTAGGGCCACTCTGGCGGCATCGTATTGGGGGCACTCCAGCATGA
CGTGGCTAGCTGTCTCATCGTCTGTTGGACAGTCCGCGCACTTCGTGGTC
TGATCCCCGGCCTCCTGTGAAACCCCCACTGACCTGCCCGCCTGCCCCCG
TGTAGTTTCCGACCTAAACAGAAACATGAGACGGGTTCCGTAATCGGGCT
GCCCTCGCAGATATGGTTTGATGGGCCCAGCTCCCGGGGCGGCGGTATCA
TCTGACCATAAAATGATTGTGCCTCTTCCGCTAGCAATGTATCCTGCTCA
GCAAACTCCTGACGCGATTCCTTGGCAAGCAGTGATGACCTCATAGCCTC
TGTGTCCTCGTAATCTCCGCTTATAGTTAGCGACTTCCACAGATCAGTAA
CATGAGTCGCCCAGACTACAGGGGGCCTGCCCTTCCGTGTCGATGGTAGT
CGGTCGTTTTCCATATGTCGCAGATCGTAATCCCACAAAATCTTCTTCAA
GTCTCTGCTGGATTGTAAAGTCTCCAACCCTACGTCCCCTCGGACAGCAC
AACTGGGCGTGCGCTTGCCACAGCCAAGCATATACTTCGCAGCTCTATGC
TGAACAGATTCGAGGGCGCGCGTGTGGTTTCCAATGCCCTCCCATACTTC
AGTTGCGTACTCCAGTGACGGACGGACTACGCTTTTGAAAATGTTCAGTT
TCAGCCTGGTAGTCACGGATTTATGCTTGAACAACCGGTACAATCGCCCC
ACCCGTGCCCTGCCCGTGCGACTCACCTTCGCACAGTGTGTCCCACTTAC
AGGAGCTATCGAAGTCCACCCCCAGATACGTGTACGTTGAAACCTTGGGG
ATAGTGGCAGGGCCCCATTGATAAGGTTCCGTGCGCTGCGGCTGCGCTTT
CGACTCTTCGTTGAACACTACGACTCCGCATTTGTATGTAGTATTCGTGC
AGTACTTAGTATTCGTGCACAGTTCTGGCTTGCCAGGGACAGCTGGAGCG
GTGCTCTACTTATCGCCGGAAGATGCTGCGTAGTTGATTATGGTCTTTTG
AGATACGGCAAGCACAGCGTGAAGACATACGGTTTGGTGGTTACGCATCC
CGCATCCATTTGCCGGCGGCATTCACCGTGAGAGAACACGAGCAATGTCT
GCTGTAGTAGGGATGCTTGGGGGAAACTGATGGGCGTGTATGATACGCCG
CACTGAACACGTGGGCACCGAGTGCCTTGTGGTGGGTTGCTTACTCTGTA
GATCACTTGCCTAGATGGGTTGCTCTTGCGACAAGCCCTGGGAACCTGCA
ACAGATCATGGGGGCGGACTCACTTGTATTGTATCGCTCTGTCTTGGCCT
ACAGTTCAGCAATGTCGTGGGATAGGCACACGACGCGACGCCAAATGCCA
TCCGGCTAGGACCCTCCCGGGGGCTGGGTGGTGGTCCAGGAATGTACTCC
GCCTCGCACGAGTGTGGGATTGAGTGTTCTCGTACTAGTGGTTATCACAT
TTCAGAATCGAATGTTCTCGTATTAAGCAGTGTTATCACTAGGCCTAGGT
CTAGCCGGGGAGGCCCCCCCCCCACCCGGACTCTCACGAGTCCGGGATGG
GGGGGGTATGGACTTGGCCATCCCTCCGCCTCTGGTGGGGGGGTGGCCAC
CCCCTCCCACCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGCCTC
GCACGAGGCGCGGGGTCAATGGTCTCGGGGCTAAGGCAAGCACCACGTGA
GTACACGTATATGTATATATTTCACATTAAAGAATTTAAAACAAAAGGTG
GGGGGAAGGGGGCGCTAGCTACAATGCACATGTATGCCCCAAGCATCAAC
ACGATAGCAACACAGAGTGGGGTGCAGGCTACGTCGCTAAAGACCTCAAC
AGCGGCCCTTCCTGAGCCCTCGCCGGGGAAGGAGTGTGTGGGGGCGGGGG
AGGAGGACGGGCATGCGATGCGATGTGGCGCATACCTCGATTCATGCGAT
GCGCTGTTGTTTGTCATCACATCACATCGCATCACATCACGACATGGAGT
GTAAGTACTGCCGCACCACCAGCCGGAGGCAAAGCACCACACACTGTGGC
CCGAAACATGCGTGGATGGGGTAGCATGTTAACACGCTACAACACCGTAG
TCTACTCTACCTTGGCATGGCGTGAAACATGCATGGATGGGTAACACGTT
AACACACCGTACTCTACTCTAAACTTTGCATGGCCCGAAACATGCATGGA
TGGGTAGCACGTTTACACACTACAACACTGTACTCTGCTGTTTCCTGGGC
ATGGCGCGAAACATGCATGGATGGGTAAACACGTTAACCCTACAACACCG
TACTCTACCCCCCCTTGCCATGGCGTGAAACATGCATGGGTGGTTAACAC
GGTAACACGCTACAACACCGTACTCTGCCCTACCTTGGCATGGCGTGAAA
CATGCATGGAGGGGTAGCACACTACAATGCCGTACTCTACTCTACCTTGG
CATGACGTGAAACATACACGGATGGGTAACGCGTTAACACCTACAACACC
GTGCTCTACTCTACCTTGGCATGGCGTGAAACATGCATGGGTGGTTAACA
CGGTAACACGCTACAACACCGTACTCTCTGTACCTTGGCATGGCATGAAG
CATGCATGGATGGGTAACACGCTAACACCTAAAACACGGTACTCTACTCT
ACCTTGGCATGGCGTGCGCGCAGGACGAGGGCTTCGACCCGGAGGGTCTG
GAGGGGGAGGTGACCAAAATCAAGCTGTGGAGCGAGAAATACCAGTCGGA
GCTGACGTCGAACCGACCCGTCATGGTGCAATTCATGGTGGGCACAAGTA
CTTGGCAGTATATATATGACTTCGAAGTACCCATGTTGTGCTTGCCGTAG
TCCCGAGACCATTGACCATGCGCCTCGGTCGAGACGGAGCAGGACCCCTC
CCTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCACCCCCCTGCCACA
TGCAGAGGGGTGGCCAAGCCCATACCCCCCCCATCAGTATAGCAGCACTT
ATACAGCCTTTGCACATACCCCCCCCATCAGTATAGCAGCACTTATACCC
CCTTTGCAGTACCGTAGAAGTCAAGGGTGTGTGCATACCACCGACTGTCG
GCCAGTATACTACAGTACTTGCTGGACCGCCAGCCAGCCCCCGCAGGGTA
GCCTTTCGTCCGTTGGCCTCGCGTCCCTACGTGGCCGGGACGGAGCGTAC
CGGGTTCTCACCTCCTTGGTCAGGCGTGACACTACTTGAAGTACGGGATT
TTGGTGAGGGACTACTTGTACTTCCGGAAGTATGAGGTGTACTGCCATCG
TATTTTCTATATGGGTTAGAAAGCACGCTCAAGTCCTCCCAAATTCCTAT
GGTACCGCTTCATGTACTTCTGGAAGTAAACCTTGCTATACCGAGGCGCG
TGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACACATGTAT
ATACTGTAGTAGTCATGTGGAGCGCTGTGCGTGCAGCATTTCCGATGCCC
GGTGCGCGTATTGCGGCGCCCGGTCTGCGCGCCCGACGTTTGCGCCGATG
CGCATCATTCGCGCATTGGGGGCTCCCGACTATCTCGAGGCATTTACATG
ATACTTGTAGAATAGAAGCTCACGCCCTGTGCAGCTGTGGGCGGCGTCTC
TTCGGCTTGGAGGCTTGAAATGCCCGGCTCTGGGGGCGAGCGGACGATGG
TGTTTCGCTTTTTTTTTTCGTCCCCCGACAAATGTGGCTAGGTGGTGAGG
ACAGCAGCAAGATGACGCTCGCTGGACCCTCCAATGCGGTTCTCAAGAAA
GAACCCTAAGTAGTACTGCTGTACAGGTACTTGGAAATTTACATACTATA
ACAGCAACTCCAGCTACTGTAATTTGCTCCGCCCTCGACGGCGTGTGGGC
AATGGTCTCTGGACTACGGCACGCGCAGCGTGAGCACTTTGAAGTACATA
TGTATTCGAGTACATATACATACTTGCTGTGTTTGTCGGAAGGACTTGCA
CACCAACCAGAGCCCCCCGCGGAAGAACATTTATCTCTGAGGTTCTGTTC
CGGTTCGTTTCGGACGAAACCGCTGGGGAGAACTCCCCGTGGTCCAGACG
CAGCCCTTCCGAGGGTTGTCGGGTGAAATTAGGCCGTTGCCGGCCGTGGG
TGTTTTACCCCGAACAAACAAAATAGGGTGGTTGCCAAGTCCCTTCCCGA
GAATATGGTACCTACTGCGCGATCCACGAGAAGCAGCAAAGACGGGGATC
GTTCGGGTCCAGGGCATGGACAGAGACGAGAAACCTCATCCGAACGTGAG
TACACTGTAGTTTTTTTTTTTGCGGCGATGGGCAGACAAGCAACAGACGC
CTTGCAGGGGCTTAGGTTATTCTACGTTTGCAATGACGGTCTCCGCAACA
TGCAATGATACGACGGCCTCCACAACATGCGATGATTTGTAGTGGAGGTT
ACTGTGGGAGGCGTTGTGATATGCACGCCAAGGGCAATCCAACCGGTCTT
GTCGCCCGCAATCCGCGCCGGATTGACTACCTAGCGCTGCGGAGATTCAG
GCGTTTGCCGCACCATACCATGGGCCGACAACGCTGGGGGCACACGCACT
TCAACGATCGGTGGCATGCACAGGACATGACACACACACCCATGTGTACT
TCGAAGTACTGTAGCAGTGCATACTGCAGTAGAAGTGTATGTAGTACTAC
GTGTGTGCGTACTCCCCCGCATTTTGCTTGCCGTGAATGCCTGTGGGTAC
GGCTGCACAGCAGTGTGTACTGATACTGTGGTGGCCGCACTTGCAGTACT
TAGCTGGAAGGCAATCTAGTAGTTACAAGTACGTTGTTGCAAGCACCTTC
CGAGTGCCCTTGTGTACTAGAGCTACAGTAGTACGGGCATGGGGCCTGGA
ATGTGAGTCTTTTGCGTGGGGCTGCTGGGCTCCCCGGGCCCTGGAAGGCC
TGCTTTTTGAAGGGGGGGCTGGGAGGCGTTGCTCCATCGCTGCTGTACAT
GTATATCTACTCACATTGTGCTTGCCGTAGTCCCGAGACCATTGACCACG
CGCCTCGATCGAGACGGAGCAGAACATGTACTGAGTACCAAGACAAGTGC
TCGAGTATAGCACAATACTAGCCCAGGGACCGCTGGGGAAAGGTTTGCTG
CGCTAGTCATAACTTATGGACTAGCTTTTCCCCAAGGTGTATACTTTGAA
GTATGATGCATCCCAGAAGGGCCAACCCCTGTGGTCCATGGTCATATGGC
TACGGCAGGCGACTCATCAGTAGACCCCTCCCACATCACCCCCCCCCCCT
GCTGCAGCTGTCTGCGTGTGGACCGACTTGCCTGCAATCCACCCCGCCCC
CCCCCCCCGCTGTCCACCGATGGACTGGACTGACCTCCCCCCAATCCGGC
CCCCGGCAATGACGGAACATCCAAGCAAATCAACCTATTTAGCTCTATTT
TGAGTGGTAGATAAGCGGCGAGCTCAAGAGATCTATACATCTATCGATAG
TCGATATTCGATAGTTTGACCCACACTACTTGTAAATCCAAGTAGCTAGT
ATCGCCACCCACAAAATCAGTCGAGCCCGATTACGTATCTACTGATCGAT
ATTCCATCACTGCAATGGACTGGACTGACCTCCCCCCAATCCTGCGTCCG
GCCCCTGTCGCTGTCTGAAATGGCGCCGCCCCCCCCTTGGGCGCGCCCGC
ACGCCCGATCCGACCCGACCCGATTCTGTGCAGGAACCATTCAAGTTCAT
CGCACACTTTGAGTTTCTCGAGGTGGACAAGCTGTCGTGACAAGGTGTGT
CGCGACAAGCTCTGAGGGAGTGGCCTCCTCGTAAACGGGACGACGGATCC
CATGGGCCCCGGCCGTTGCAGTCACGGTATAATCTCGCCGCCGCGGGTGG
CCTACTGGGTATAGGGGGTGCTCAGAGCAGTTGTACTGTTACGTAAGTAG
TTGGGAGGTATGAGGACATACAGTTACACAAGTACTTCGAAGCAGTTGGG
TAGGAGGGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:3522179..3530888-

>mRNA_S-ischiensis_contig9.20822.1 ID=mRNA_S-ischiensis_contig9.20822.1|Name=mRNA_S-ischiensis_contig9.20822.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig9:3522179..3530888- (Schizocladia ischiensis KU_0333)
ATGATTGCCTCCAGGTTATTCGTCCTGCTCGTGGCCGTGGGATGATTGCC
TCCAGGTTATTCGTCCTGCTCGTGGCCGTGGGGTGCCTCTTTTTGCTTAA
TCCCCCGAGCACGAATGCATTCGTCGCCATGGGCACTGGGGCTCTGCGAC
CTGGATTGCGCAGCTGGGACACACGGAGCCAATGGCCGCGTTTGGGCAAG
CGTGCCTCTTTTTGCTTAATCCCCCGAGCACGAATGCATTCGTCGCCATG
GGCACTGGGGCTCTGCGACCTGGATTGCGCAGCTGGGACACACGGAGCCA
ATGGCCGCGTTTGGGCAAGCGGGCCGTGCCACGCGGGGCAGCGACGATGG
ATTTCGGGTGGGTGGACTTCACACACAACCCGCAGGAGGTGGCCGTGGGG
GACACAGTGAAAGTCATTGCCAAGGGGTTGAAATTCTACCACATTAAGGC
CTACAAGGGGCCGTGCCACGCGGGGCAGCGACGATGGATTTCGGGTGGGT
GGACTTCACACACAACCCGCAGGAGGTGGCCGTGGGGGACACAGTGAAAG
TCATTGCCAAGGGGTTGAAATTCTACCACATTAAGGCCTACAAGGACGAG
GGCTTCGACCCGGAGGGTCTGGAGGGGGAGGTGACCAAAATCAAGCTGTG
GAGCGAGAAATACCAGTCGGAGCTGACGTCGAACCGACCCGTCATGGTGC
AATTCATGGACGAGGGCTTCGACCCGGAGGGTCTGGAGGGGGAGGTGACC
AAAATCAAGCTGTGGAGCGAGAAATACCAGTCGGAGCTGACGTCGAACCG
ACCCGTCATGGTGCAATTCATGGAACCATTCAAGTTCATCGCACACTTTG
AGTTTCTCGAGGTGGACAAGCTGTCGTGAGAACCATTCAAGTTCATCGCA
CACTTTGAGTTTCTCGAGGTGGACAAGCTGTCGTGA
back to top