mRNA_S-ischiensis_contig9.20788.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.490e-24 Identity = 53/107 (49.53%), Postives = 81/107 (75.70%), Query Frame = 3
Query: 810 HILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNV 1130
+IL + PE+ VG + +KG L FD+LLR++G+F+G+L+STG LV+G TG+VRG+I+ L++V +G V G++ E V++R+ A+V GNIT SL++DP+ S G LNV
Sbjct: 65 NILAETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNV 171
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.240e-22 Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 3
Query: 822 QKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTPRAR 1145
+ PE+ +G +++ G L FD+LLRI+G F GRL+S G LVVG TGV+ GD+ + +V ++GKV GD+ + V +R RA V GNIT SL +DP G LNV P R
Sbjct: 29 ETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGER 136
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 2.070e-20 Identity = 48/92 (52.17%), Postives = 70/92 (76.09%), Query Frame = 3
Query: 855 TIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNV 1130
T +G L FD+LLR++G+F+G+L+STG LV+G TGVVRG+I L++V +G V G++ E V++R+ A+V GNIT SL++DP+ S G LNV
Sbjct: 12 TFQGELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNV 103
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.690e-20 Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 3
Query: 807 VHILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEG-KVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTPRA 1142
V I++ +PE+ +G + +KG L F++LLRIEG FEG+L+S GSLVVG GV+ G ++ +K+V++ G K+ G++ E + +R +A V GNIT ++ +DP+ G LNV P+A
Sbjct: 80 VSIVDAEPETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQA 192
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.520e-19 Identity = 50/113 (44.25%), Postives = 77/113 (68.14%), Query Frame = 3
Query: 807 VHILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEG-KVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTPRA 1142
V I++ + E+ +G + ++G L F++LLRIEG F+G+L+S GSLVVG G + GD+ +K+V+I G K+ G++ E V +R +A V GNIT S+ +DP+ G LNV P+A
Sbjct: 84 VPIIDAEAETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQA 196
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: D7G0L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L1_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 3.600e-19 Identity = 49/106 (46.23%), Postives = 74/106 (69.81%), Query Frame = 3
Query: 813 ILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLIST-GSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALN 1127
+LEQKPES+V TL +KG L F +LLR++G FEG LI+ GSLVVG G V GD++ +++VY+EG V G++ V+++ ++ G++ M LTLDP S + ++N
Sbjct: 86 LLEQKPESMVAETLRMKGELEFTRLLRVDGRFEGELITDKGSLVVGPKGEVVGDLKNMQEVYVEGIVRGNVFANDVKIKNAGMLLGDVQCMCLTLDPTASIRVSIN 191
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.900e-18 Identity = 47/114 (41.23%), Postives = 75/114 (65.79%), Query Frame = 3
Query: 816 LEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEG-KVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTPRARVKV 1154
+E E+ +G + +KG L F++LLRIEG FEG+LIS GSLVVG G++ G+I G+K+V + G +V G++ + + +R + + GN+T S+ +DP+ G LN+ P A K+
Sbjct: 73 IEGDAETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAPQKI 186
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 4.920e-18 Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 3
Query: 810 HILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTP 1136
HILE +PE+++G TL I+G L F++LLR++G FEG L+STG L+VG G + GD++ + D+ + GKV G++ + +++ A + G++T +L +DP G LNV P
Sbjct: 114 HILESEPETVIGETLQIEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNP 222
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: A0A7Y3IS56_9BACT (Polymer-forming cytoskeletal protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7Y3IS56_9BACT) HSP 1 Score: 90.5 bits (223), Expect = 1.200e-17 Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 3
Query: 822 QKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDL-ICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTP 1136
Q PE+++G +TIKG L F LLRI+G FEG L+S G L+VG G V+ +I L++ YI GKV GD+ + E + +R RA V GNIT L++D S G +NV P
Sbjct: 46 QDPETVIGEQVTIKGELCFTTLLRIDGNFEGTLVSQGKLIVGPNGSVKANID-LEEAYISGKVEGDITVKERLHLRGRAEVHGNITAKLLSVDEGVSIFGHVNVPP 150
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN) HSP 1 Score: 95.1 bits (235), Expect = 5.900e-17 Identity = 48/115 (41.74%), Postives = 76/115 (66.09%), Query Frame = 3
Query: 813 ILEQKPESIVGPTLTIKGVLVFDKLLRIEGTFEGRLISTGSLVVGETGVVRGDIQGLKDVYIEGKVYGDLICETVQVRKRAVVQGNITTMSLTLDPETSTKGALNVTPRARVKVA 1157
+LE +PE+++G TL+I+G L F++LLR++G FEG LIS G L+VG G + GD++ + D+ + GKV G++ + V++ A + G+IT L +DP G LN+ P A K+A
Sbjct: 354 LLEMEPETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAPNKMA 468 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20788.1 >prot_S-ischiensis_contig9.20788.1 ID=prot_S-ischiensis_contig9.20788.1|Name=mRNA_S-ischiensis_contig9.20788.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=479bp MSIVGWLFKGDSQEESAPARGGKGRKGPQQPTLTQNPPAGPARSTSSPTAback to top mRNA from alignment at S-ischiensis_contig9:3215201..3221772+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20788.1 ID=mRNA_S-ischiensis_contig9.20788.1|Name=mRNA_S-ischiensis_contig9.20788.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6572bp|location=Sequence derived from alignment at S-ischiensis_contig9:3215201..3221772+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:3215201..3221772+ >mRNA_S-ischiensis_contig9.20788.1 ID=mRNA_S-ischiensis_contig9.20788.1|Name=mRNA_S-ischiensis_contig9.20788.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2874bp|location=Sequence derived from alignment at S-ischiensis_contig9:3215201..3221772+ (Schizocladia ischiensis KU_0333)back to top |