mRNA_S-ischiensis_contig9.20744.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20744.1
Unique NamemRNA_S-ischiensis_contig9.20744.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A4D9DI08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DI08_9STRA)

HSP 1 Score: 214 bits (546), Expect = 6.930e-63
Identity = 109/252 (43.25%), Postives = 156/252 (61.90%), Query Frame = 1 
Query:  310 EPEAHPTLGELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIADAHMKKG-TASLPGVITLVSRADN-LGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWL 1059
            E  +HP LG+L+ADM YK+VY +++  L +VP+WE+QRILR  RA+ IA   M++     LPG+ITL   AD    ++DGQHR+ AL +++D+G   +     L++VF  E + E  +LF EIN A PVKL+D+P G GA   +K  +D A   L  ++   FK S   + PHVNIDN+RD +F+  ++ RHG K+  +L++WL  AN+ L  K    W  + +G N     KA+ KA+K  FFLGLD  WL
Sbjct:   35 EDSSHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILRRERAESIAREKMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILADSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPEG-GARPDIKGIIDGAVDSLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQHHIVERHGHKSAAELLKWLQDANETLSTKHDRDWKRIFKGRNPLVIEKAVAKAKKGGFFLGLDNRWL 285
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A7S2XHN0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XHN0_9EUKA)

HSP 1 Score: 216 bits (549), Expect = 1.210e-62
Identity = 114/260 (43.85%), Postives = 160/260 (61.54%), Query Frame = 1 
Query:  301 KALEPEAHPTLGELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIA----DAHMKKGTASLPGVITLVS--RADNLGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWLD 1062
            KA E  +HP LG LVAD+ YK+VYR+SLESL N+P+WE+QR  R  RAK IA    D+ +K G    PG +      +   +G++DGQHR+GA   M+  G  +    N+LV+VF     K+   LF EIN+AEPVK +DMPG    +  +K ++DDA  EL   +K MFK S +C  PHVN+D LR+++F +++  R  LK+  +L+ WL+  N E+       W+        ++F KALEKAR+N FFLG+DK WL+
Sbjct:   87 KAEEANSHPVLGTLVADLGYKKVYRASLESLQNMPMWEKQRAYRDERAKKIAKDKKDSVVKGG---FPGCLVAYEFKQTRAIGLLDGQHRLGAQKHMAANGLCDPEANNVLVEVFQFNDGKQADKLFIEINKAEPVKSIDMPGEVNPN--IKVSIDDAVDELHDEFKAMFKVSSKCLAPHVNMDVLREDLFEADVCGRFNLKSKKELLAWLMAKNTEMAKLDDAAWEQRRGSKKPKSFGKALEKARRNNFFLGMDKQWLE 341
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: W7TLW5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLW5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 9.880e-62
Identity = 107/251 (42.63%), Postives = 159/251 (63.35%), Query Frame = 1 
Query:  322 HPTLGELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIAD---AHMKKGTA-SLPGVITLVSRADNLGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWLD 1062
            HP  GELV D+ YK++Y +S++ L ++P+WE+QRI R  RA+L+A+   A +++G A +LPG +T+    + +G++DGQHR+GAL L+ D+G        ILV+VFP +  ++V  LF EIN A+PV ++DMP  + AD + K  +   +  L   + EMFKPS  CR PHVNID LRD +F+S ++ R G     QL+EW+   ND L A+    W    +G   +   KA+ KAR N FFLG++ +W+D
Sbjct:  107 HPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMP--DMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMD 355
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: W7TKX0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKX0_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.200e-61
Identity = 108/252 (42.86%), Postives = 156/252 (61.90%), Query Frame = 1 
Query:  310 EPEAHPTLGELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIADAHMKKG-TASLPGVITLVSRADN-LGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWL 1059
            E  +HP LG+L+ADM YK+VY +++  L +VP+WE+QRILR  RA+ IA   M++     LPG+ITL   AD    ++DGQHR+ AL +++D+G   +     L++VF  E + E  +LF EIN A PVKL+D+P G GA   +K  +D A   L  ++   FK S   + PHVNIDN+RD +F+  ++ RHG K+  +L++WL  AN+ L  K    W  + +G N     KA+ KA+K  F+LGLD  WL
Sbjct:  110 EDSSHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILRRERAESIAREKMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILADSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPDG-GARPDIKGIIDGAVDNLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQHHIVERHGHKSAVELLKWLQDANENLSTKHDRDWKRIFKGRNPLVIEKAVAKAKKGGFYLGLDNRWL 360
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A0G4J5N5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J5N5_PLABS)

HSP 1 Score: 211 bits (537), Expect = 1.640e-61
Identity = 113/253 (44.66%), Postives = 160/253 (63.24%), Query Frame = 1 
Query:  319 AHPTLGELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIADAHMKKGTASLPGVITLVSRADN-----LGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWLD 1062
            AHP LG++  D+ YKRV+ +S+ +L  +PVW RQR L   RA  I+  H+K+    LPGVITL  +  +     LG+VDGQHR+ A+ L+   GAW+    NI VD+F    D ++A LF++INRAEPV LVD+P   GADD  K  L+ A  ++  ++  MF+PSQ+CRPPH+N+D LRDEI++S+L+ +        L ++LL AN  +  ++   W     G ++  F KAL KAR NA +L LDKSWL+
Sbjct:   45 AHPVLGDVARDVTYKRVFFTSISALQGIPVWNRQRTLSQERAVEISQ-HLKQ-RPRLPGVITLFEKVSSKGVPELGVVDGQHRLAAVQLLVRQGAWDAHNANIAVDLFRVGDDNDIADLFSDINRAEPVLLVDLPES-GADDTTKEKLNRAIEQIRAKFPTMFRPSQQCRPPHLNVDVLRDEIWQSDLLDK---VPVDNLSQYLLDANHAMHERTDAQWRKALSGKSR-AFKKALTKARDNACYLALDKSWLN 290
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A0M0JVH4_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVH4_9EUKA)

HSP 1 Score: 214 bits (544), Expect = 9.730e-61
Identity = 118/265 (44.53%), Postives = 161/265 (60.75%), Query Frame = 1 
Query:  319 AHPTLGELVADMKYKRVYRSSLESL-VNVPVWERQRILRPHRAKLIADAHMKKGTASLPGVITLVSRADN---------------LG-IVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDAL-AQGSNKQTFAKALEKARKNAFFLGLDKSWL 1059
            +HP  GEL+AD  YKR+YR S  +L     +WERQR  R  RA LIA A  K      PG I +V R+ +               +G ++DGQHR+GA  L++  G  +    +ILV+V+P   ++ V  LF EINRAEPV LVD+P G GA D   A L  A+ ELAQRY  MFKPS  CRPPH+N+D LR E+ R+E+++RH L +  +L++W+ KAN +LGA+S   W +  A+  ++     AL KAR+NAF+LG+   WL
Sbjct:  180 SHPVFGELIADFGYKRLYRGSPTTLWAGTMLWERQRAFRQERANLIAAAKAKSKATGWPGAIAVVERSSSGSEASAPTGHGGGTAIGTLIDGQHRLGAAHLLAQRGKLDGALASILVEVYPPMEEQGVKDLFTEINRAEPVLLVDLPEG-GASDQDNAILTAAAEELAQRYPAMFKPSHGCRPPHLNVDVLRAELHRAEVLSRHKLASAAELLDWVDKANRDLGARSDEQWASTGARAKSETALGNALSKARQNAFYLGMGWDWL 443
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A7S2RJV7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RJV7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.150e-59
Identity = 113/261 (43.30%), Postives = 155/261 (59.39%), Query Frame = 1 
Query:  322 HPTLGELVADMKYKRVYRSSLESLVN---VPVWERQRILRPHRAKLIADAHMKKGTASLPGVITL--VSRADNLGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPA-ETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSE--------LITRHGLKTTPQLVEWLLKANDELGAKSAGHWDA--LAQGSNKQTFAKALEKARKNAFFLGLDKSW 1056
            HP  G+LV D  YK+VY S  + LV+   +PVWERQR  RP RAK IA+A        LPGVI++  V + D  GIVDGQHR+G L L+   G W + +  +L +VFP  ++DK+V  LF EIN+A+P   +D+PG    D+ +K  +DD  A  A+ Y EMFKPS RCRPPH+NID  R E+F+SE         +++ G      +  ++   NDEL   +   W    + +  N+QT  KA+ K +KN F+LGLD SW
Sbjct:  103 HPIYGQLVHDFGYKKVYASEPKRLVDKIVLPVWERQRTFRPERAKAIAEAKTNDDRFGLPGVISVYDVDQWDKRGIVDGQHRIGGLELLLRGGKW-KEDTLVLTEVFPVGDSDKDVKDLFLEINQAQPAMEIDLPGAV-EDERIKTTIDDVCARFAKEYPEMFKPSARCRPPHLNIDVFRQEVFQSEKLRKVIFDAVSKDGETAAETVYTYISDMNDELSKLNENEWGQSHVVKIKNQQTLKKAVTKCKKNKFYLGLDTSW 361
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A7S0TTP2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTP2_HEMAN)

HSP 1 Score: 201 bits (511), Expect = 1.220e-55
Identity = 108/278 (38.85%), Postives = 161/278 (57.91%), Query Frame = 1 
Query:  298 GKALEPEAHPTLGELVADMKYKRVYRSSLESLVN-VPVWERQRILRPHRAKLIADAHMKKGTASLPGVITLVSRADNLGI----------VDGQHRVGALMLMS------------DAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWLD 1062
            G+   PE HP  G L++D  YK+VY +   ++ + VP++++QR  R  RA  +A+A  K G +  PG IT+V   D   +          VDGQHR+GA  ++S             AG  E     +LV+V+P  TD+  A +F EIN+AEP KLVD+PG  GA   ++A +D+A+ EL + +  MFKPS++CR PH+NIDNLRDE+++S ++TR G     +L++W++  N +LG      W    + +   T   AL KAR N FFLGL+  W++
Sbjct:  190 GRPANPEVHPVFGTLISDFGYKKVYAADPATIYSKVPIYKKQRTFRTERASAMAEAKAKMGVSGWPGTITVVELDDQAVVQGADDPTFVLVDGQHRLGAYTILSRRLKSRNPGQPLPAGMGE-----MLVEVYPQATDEMAAEVFTEINKAEPCKLVDLPGQSGAPPEVRAVIDEAAEELRRMHANMFKPSEKCRTPHMNIDNLRDELWQSGVVTRMGFTRGDELLQWMVDKNAKLGEIPDEEWTPKRR-TRAATLQNALVKARANGFFLGLEWDWIN 461
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A7S0RPI8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RPI8_9CHLO)

HSP 1 Score: 200 bits (508), Expect = 2.030e-55
Identity = 117/275 (42.55%), Postives = 170/275 (61.82%), Query Frame = 1 
Query:  283 PATVSGKALEPEAHPTLGELVADMKYKRVYRSSLESLVN---VPVWERQRILRPHRAKLIADAHMKKGTASL-PGVITLVSRADNLG-----IVDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALA--QGSNK---QTFAKALEKARKNAFFLGLDK-SWLD 1062
            PA    K +E + HP LG L+ D  YK+VY   +  L++   +PVWE QR  R  RAK I  A        + PGVITL S A++       I+DGQHRVGAL ++ + G   + +  ++V+VF  + D+E A+LF EIN+A+PVKLVDMPG   A  A + AL+ A+A L  ++  MFK S+RC PPH+N+D L+D++F+++++ R  L T+ QL++W+L+ N +L  +S   W  L   +GS+K   +TF KAL KAR   F+LG D   W+D
Sbjct:  178 PAPEPAKTVENQQHPLLGTLLQDFGYKQVYSLKMSQLIDSKVLPVWESQRSFREDRAKKIVKAKQTDQRFGVFPGVITLWSDANSKDAKVYKILDGQHRVGALRILMEEGE-VKPDDEVMVEVFRLKGDEEAAALFTEINQAQPVKLVDMPGVTDA--ATRVALEGAAASLKAKFPAMFKTSERCLPPHLNVDVLKDKLFQADVMPRFKLTTSKQLLDWMLEQNVKLAERSDDEWIELRGPKGSSKKKEETFLKALIKARDTEFYLGSDNWKWID 449
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BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Match: A0A7S2J097_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J097_9EUKA)

HSP 1 Score: 197 bits (502), Expect = 5.990e-55
Identity = 125/284 (44.01%), Postives = 164/284 (57.75%), Query Frame = 1 
Query:  289 TVSGKALEPEA--HPTLGELVADMKYKRVYRSSLESL-VNVPVWERQRILRPHRAKLIADAHMKKGTASLPGVITLVS---RAD----------------NLGI-VDGQHRVGALMLMSDAGAWERRERNILVDVFPAETDKEVASLFAEINRAEPVKLVDMP-GGEGADDALKAALDDASAELAQRYKEMFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDELGAKSAGHWDALAQGSNKQTFA--KALEKARKNAFFLGLDKSWLD 1062
            T + +AL  +A  HP  GEL+AD+ YKR+YR +  +L     +WERQR  R  RA LIA +  +      PG IT+V    RAD                ++G+ +DGQHR+GA  L++  G  E     ILV+V+P   ++    LF EINRAEPV LVD+P GG  ADD +   L +A+  L++RY  MFKPS  CR PHVN+D LR E+ R  +++RH L T+ QLV+WL   N ELGA+    W A   G +K   A  KAL KAR + FFLGL   WLD
Sbjct:  129 TEASEALGSDAGDHPIFGELLADLGYKRLYRGAPSTLWAGTLMWERQRAFRQSRASLIAASKARSPVQGWPGSITIVEQGPRADAGAGGAESSESGVESTSIGVLIDGQHRLGAAHLLAQRGKLEEALGTILVEVYPPMNEQGKKDLFTEINRAEPVLLVDLPDGGASADDNV--ILTEAAEALSERYPTMFKPSHSCRSPHVNVDVLRAELHRVGILSRHQLTTSEQLVQWLETTNAELGAQPDAAW-ARTGGRSKSDAAQTKALGKARDHNFFLGLSWEWLD 409
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DI08_9STRA6.930e-6343.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2XHN0_9EUKA1.210e-6243.85Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
W7TLW5_9STRA9.880e-6242.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W7TKX0_9STRA1.200e-6142.86Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A0G4J5N5_PLABS1.640e-6144.66Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0M0JVH4_9EUKA9.730e-6144.53Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S2RJV7_9STRA5.150e-5943.30Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0TTP2_HEMAN1.220e-5538.85Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0RPI8_9CHLO2.030e-5542.55Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2J097_9EUKA5.990e-5544.01Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2915369..2921374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue9.9e-45
Seed eggNOG ortholog2850.Phatr44938
EggNOG OGs2C3TE@1,2S2UE@2759,2XBX7@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000790.1
Exons7
Model size1385
Cds size1032
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.9088604-UTR-S-ischiensis_contig9:2915368..29156851622817398.9088604-UTR-S-ischiensis_contig9:2915368..2915685Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2915369..2915685 -
1695741084.8512142-UTR-S-ischiensis_contig9:2915368..29156851695741084.8512142-UTR-S-ischiensis_contig9:2915368..2915685Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2915369..2915685 -
1622817399.0130234-UTR-S-ischiensis_contig9:2921338..29213741622817399.0130234-UTR-S-ischiensis_contig9:2921338..2921374Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2921339..2921374 -
1695741084.9591699-UTR-S-ischiensis_contig9:2921338..29213741695741084.9591699-UTR-S-ischiensis_contig9:2921338..2921374Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2921339..2921374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.9206178-CDS-S-ischiensis_contig9:2915685..29157631622817398.9206178-CDS-S-ischiensis_contig9:2915685..2915763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2915686..2915763 -
1695741084.8641386-CDS-S-ischiensis_contig9:2915685..29157631695741084.8641386-CDS-S-ischiensis_contig9:2915685..2915763Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2915686..2915763 -
1622817398.934378-CDS-S-ischiensis_contig9:2916145..29162141622817398.934378-CDS-S-ischiensis_contig9:2916145..2916214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2916146..2916214 -
1695741084.8757753-CDS-S-ischiensis_contig9:2916145..29162141695741084.8757753-CDS-S-ischiensis_contig9:2916145..2916214Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2916146..2916214 -
1622817398.9461932-CDS-S-ischiensis_contig9:2917058..29171301622817398.9461932-CDS-S-ischiensis_contig9:2917058..2917130Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2917059..2917130 -
1695741084.888972-CDS-S-ischiensis_contig9:2917058..29171301695741084.888972-CDS-S-ischiensis_contig9:2917058..2917130Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2917059..2917130 -
1622817398.9596734-CDS-S-ischiensis_contig9:2917496..29175711622817398.9596734-CDS-S-ischiensis_contig9:2917496..2917571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2917497..2917571 -
1695741084.8998842-CDS-S-ischiensis_contig9:2917496..29175711695741084.8998842-CDS-S-ischiensis_contig9:2917496..2917571Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2917497..2917571 -
1622817398.9724138-CDS-S-ischiensis_contig9:2918621..29187471622817398.9724138-CDS-S-ischiensis_contig9:2918621..2918747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2918622..2918747 -
1695741084.9125767-CDS-S-ischiensis_contig9:2918621..29187471695741084.9125767-CDS-S-ischiensis_contig9:2918621..2918747Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2918622..2918747 -
1622817398.9877543-CDS-S-ischiensis_contig9:2919752..29199231622817398.9877543-CDS-S-ischiensis_contig9:2919752..2919923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2919753..2919923 -
1695741084.9314532-CDS-S-ischiensis_contig9:2919752..29199231695741084.9314532-CDS-S-ischiensis_contig9:2919752..2919923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2919753..2919923 -
1622817399.0013497-CDS-S-ischiensis_contig9:2920897..29213381622817399.0013497-CDS-S-ischiensis_contig9:2920897..2921338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2920898..2921338 -
1695741084.944122-CDS-S-ischiensis_contig9:2920897..29213381695741084.944122-CDS-S-ischiensis_contig9:2920897..2921338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2920898..2921338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20744.1prot_S-ischiensis_contig9.20744.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2915686..2921338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20744.1

>prot_S-ischiensis_contig9.20744.1 ID=prot_S-ischiensis_contig9.20744.1|Name=mRNA_S-ischiensis_contig9.20744.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=344bp
MAQRMAREGGAAVHEAFSRVRGTVLEQMAKHMPKRERAFLAERWGFFAPD
SAPQGAQAPAAAAEAAAPAKVPVPQEKAAVVGPATVSGKALEPEAHPTLG
ELVADMKYKRVYRSSLESLVNVPVWERQRILRPHRAKLIADAHMKKGTAS
LPGVITLVSRADNLGIVDGQHRVGALMLMSDAGAWERRERNILVDVFPAE
TDKEVASLFAEINRAEPVKLVDMPGGEGADDALKAALDDASAELAQRYKE
MFKPSQRCRPPHVNIDNLRDEIFRSELITRHGLKTTPQLVEWLLKANDEL
GAKSAGHWDALAQGSNKQTFAKALEKARKNAFFLGLDKSWLDT*
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mRNA from alignment at S-ischiensis_contig9:2915369..2921374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20744.1 ID=mRNA_S-ischiensis_contig9.20744.1|Name=mRNA_S-ischiensis_contig9.20744.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6006bp|location=Sequence derived from alignment at S-ischiensis_contig9:2915369..2921374- (Schizocladia ischiensis KU_0333)
AACGAACCACCCGGGACCAGCCCCCGGAGGGGCAGCATGGCGCAGCGAAT
GGCGCGTGAGGGAGGTGCCGCGGTACATGAGGCTTTTTCGAGGGTGAGGG
GCACGGTCCTGGAGCAAATGGCCAAGCATATGCCTAAGAGGGAGCGCGCT
TTCCTGGCGGAGCGGTGGGGCTTCTTCGCGCCAGACTCGGCCCCACAAGG
CGCGCAGGCGCCCGCGGCGGCGGCGGAGGCAGCGGCGCCGGCCAAGGTCC
CCGTTCCCCAAGAAAAGGCCGCTGTGGTCGGGCCGGCTACAGTGTCAGGG
AAGGCATTGGAGCCCGAGGCGCACCCCACGCTGGGGGAACTGGTGGCTGA
CATGAAGTACAAGCGTGTGTACCGCTCGTCCCTCGAGAGTCTGGTCAACG
TGCCCGTGTGGGAGAGGCAGCGCATCCTTCGGCCACACAGGGCGAAGTTG
ATTGCCGACGCGCACATGAAGAAGGGGGTGAGTGCACCGGCCGGCCAGCT
ACTTGTACGGTTATATCGTTCGAATGAAACACTACAGTAGCATCGTTCTT
TTCCCCTAATTAGTCCGGGATGAATACGTTTGGACTCGTTACATTCAGCT
TGGGGGTTGAACCAGCCAAACCCCTCCCTCCTTGGCGGAGGGGTGCTCCC
TCGCACCCACCCTGGCCCCCACCGTGGTTGGGTGCCTCGGGCCTGCTCCT
TCTCGGCAGAGACGCGTGGTCATGCGGTCTCGAGGCTATGGCAAGCACAG
TGTGAGTACATAGACATATTAAATTATATCCTCCGTCTCGACCGAGGTGC
GTGGTCAATGGTCTCGGGACTACGGCAAGCACAAGATGAGTACATACGAA
GTATATTATAGGCACCGCTGGCAATTGTCTGCTCGTTGTCGTGAATACAC
GCATACACGGAGTGTTGAGGCCATGCAAGCCGGTATTGAGGGACACGCAA
GAGTCGGCGCCGGCGGAAATGATGCACAGGAATGAATACTGCGAGCCAAG
CGTGCCATTTTTGGGCTGCCTCCCTGCTGTCCCCCTCTCCCCTCCCACCC
TTCCTCGCCAGTCCCCTCCCCTCCGTACTCCATATCTCCCTCTTCCTGAC
CCCCCCCTCCCTCCAACGAGTCACCTCTCCCCTTCCCCCCTGCCGCCCCG
CCCCGCCCCGCCCTGCGATCTGTGACAATCACTTTTACGAGAGCACTCGA
TTCTTAAATGGGACAACTACTTTTCCCCTCCTCCTCCTGCTCCTCCTCCT
CCTCCTCCTCCTCCTTCTCCCCTTCCCCACACACATTTCCCTTGGCGAGC
TATAAGGAAGGGCCACCGTTGATGTGGCCTGCAACTCGCCCTATGTTGTT
CCTGTTAATACTACTGCAATACGAGAGCACTCAATCTCACGCACGTGCGA
TTGTGCCTCGCTACCATTTATATGAATCACCGCCCCGCCCTGCACGCGTA
GACGGCATCCCTGCCGGGGGTTATCACCCTGGTGAGCCGCGCGGACAACC
TTGGCATCGTGGACGGCCAGCACCGCGTGGGGGCCCTCATGCTCATGTCG
GACGCGGGGGCGTGGGAGAGGCGGGAGCGCAACATCTTGGTGGATGTGTT
CCCGGCGGAGACCGACAAGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTGTGTGCGTGCGTGTGTGTGTGTGTGTGCGTGTGT
GTGTGCGTGCGTGTGGTGTGTGCGCGCGCGCGTGTGTGTGCATGTGTGTG
CACGCATGTGCGTGTGTGTAGGTGTGTGTGTGTAGGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGCGTGTGTGTGTGTGCG
TGCTTCCAAGTGCTCGCATGTAAGTGCATGGAACAGCGCTCGGCGGAGCA
CTTCGAAGTACCCCACTGCGTTACTCACTTACTGCTTCGATGTACTGTAC
TGTACTGTACGGTGCTGTACTGTACTGTGTACTGTACTGTACTGTACTAA
ACTGAACTGCACTGAACTGAACTGTACCGTACAGGTCCTCTGCTTTGGAA
CGCCGTGCGTTGCAGTAGTAGTGCGCCCCGCTGCTCGCTCGCCTTGACCC
GAGTGGTATGTACTGTACTGTACCGCGCACTGCTGTACTGTACTTGTACT
CGTACTGTACTGCTCCGTCTCGAACGAGGCGTGTGGTCAATGGTCTCGGG
ACTACGGCAAGCACCACGTGAGTACATATATATACTCGTACTGTACTTGT
ACAGCACACTCAAGACGGTAACCACTGCGTGCTGCACTGCGCAGCAGTTG
CTCGTGGTGCACTGCACAGTATTAACAGGAACAACACGGGGCGAGGTGCA
GGCCACATCACTACAGACCTAAACAGTAGCCCTTCCTTAGCTCGCCTGGG
GAAATTTGAGTGGGGAAGGGGAGAAGAGGAGGAGGGGGAGGTGGACGGGG
AGGAGAAGGAGGTTGCAGTAGTTCAGGCATCACATTCACAGCGTACTGGA
CCTGCTCCGTCGCGACCGAGGCGCATCGGTAATGGTCTCGGGACTACGCC
AAGCACAACGTGAGTACACACGCTGTATATACTGGACTCGAGCAGATCCT
GTCCGCCCGGGCGCCCGACGAAAGCAGGTGGCCAGCCTCTTTGCGGAGAT
CAACCGCGCAGAACCGGTCAAGCTGGTGGACATGCCAGGGGGTGAGGGGG
CCGACGATGCCCTCAAAGCAGCGCTGGATGATGCCAGTGCGGAGCTCGCA
CAGGTGAGGGACGGGAAAGAGGGGTGATTCATATACTACTTCAAAGTACG
TAGTAGATTGTACCGAGGTACAATCGCACGTGTGTGAGATTGAGTTTTCT
CGTATTTTGAGTTGTCCCATTTAATAATTGAGTGTCTCATATTAGATTGG
AAATTATTTCAATGGCGTGCAAATTCCGGGCCCCGTCCCAACAACCTACG
GTGGGGACCTCACCAGAAGCCCTTCTTTTCACCCGCAGGGCATAAAAATC
AAGAAAAGAAGCCACTAAGGGGGGCAATGAAGGGGCAATACAGCGGCAAG
GGGGGTCTCTCTCGTGCCGCGTTGCGGGACGTACCTGTAGGAAAGTATTA
CACGTTTGGATCATTCTGTTGACTACAGTACAATTCCATATATCGGTGGC
GTTTTCATCCGGTCCGACTGGCTATTTACGGCACAGTAGGTGGGTTTGGT
CAAGTATCGTGACAATAACGTCACATGGGGTCTCGTCTACTGCGGCAGAC
ATTTTCGAGCGCGTGTATAGATCAAGCCGCCGGTTTGATCGCCGCGCTAT
TCGACAATTCCGGGTGGCGAGAGACGCGTGGCATGACCGTTGTCGGCGAT
TTGCACGCGCCAAGGTGCAGGTTTGGATTCTGCTGCTTGCCAGTGCTTGG
GGTATCCTGATTCCAGGCATGCATGCACTTCGAAGTACTCCTAAGTGGTT
CTGTTTTTTGCTTGAACATAAACAAGCGAGTAGGAAAGAAGAGGTGTCCC
TACATATGCGAGTTCATGGCCCCGCCCCCGGAAGCCCTTCCTTTCATTCG
CCTTCACTCGCAGGGCATACAGAAGAGCAGAAAATAGATTACGAAAGGGA
GGGATAGTACTTCTGTTGTGCTCCCAACATGCATACATACTTACCTCCAT
GTGGTCAGTGGTCACCCGGCTACAGCAAGCAACTCACGGGTGTTCATTCC
CCCTCCATCAGCTTTGCCTTCTATGTGATACCAAGTGCTCGTATGTTCAC
ACGGCTACAGCAAGCATCCCCCGATTAACTCTTTTCTCCCTTCCCGCTCC
CAGCGATACAAGGAGATGTTCAAGCCCTCGCAGCGGTGCCGACCGCCGCA
CGTGAACATCGACAACTTGCGCGATGAGGTGTGATTCATATAAAATTGTA
GCGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGTACTACAGTA
GTTGTTGTCCGATTTAAGAATTGAGTGTTATAATATTAGTGATTGCGCGA
TGAGGTGTGTTGGCAAGATGAGCTGTGCTGTGCTGGTCGGCGGACCTGAC
TTGGGTTTTTGGGTGTACACTGTGCGTCTAGGTGCGACCGGCTGTGGCTG
TCGTCGAATGACATTGTTTCCGGCCCTTTTTTTGGCGCCGTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTGCGTTGTTGTCGATGCCCGTTGCGTTTTTG
TCGGGTGATGCTCATTGCCTTTTTTGTTTGCCTTGCACGGGCAGATATTT
CGGAGCGAGCTGATCACGCGACACGGCCTCAAGACCACGCCCCAGCTGGT
GGAGTGGCTGCTCAAGGTACTGTGTTGTGATTTGGTGTGGTATCAAACTC
CACGCACATTACCGTATACGCGTCGCATCACATCGCAGATGGTCGCATCA
CACGAGCTGTTCACGCGGCACGGTGTGAGTGGCTGTTCAAGGCGGAGTAC
TCGTACTGGAGTACGTACGCTGGCGTCATGTGACGTGATGCGATGTGATG
TGATGTGATGTCAAACGACAGCGCATCAGGGTACGCATCACATTGTGTCG
CATCACACATATCATATCACATCACATCACACGTGATGTGGTATCGCATG
ATGAATGTGCGACATGATATTTCGTGTGATGTGATGTGATGCCCAAGTGC
AGCAAGCGCGTCAAGAGTACGAAGTACAATGCATCGCGTCACACATACGC
CGCGTCGTACTGAATGTCGCAACACTAATTACACTCAGGCTCCCCCAGTA
CGTATACTTTGAAGCACTCTGTACTGCACAATACAGTACGTAGTGCACTC
GAGTACAGTACCGTCATATCAGTGCTCAGAGTACCGTATACTGTACAGTG
CAGTACCGTAATCGTCGGAGAGATCTTGCCCCCCAATACCAATTTTCGGG
AGAACATTTCTCGCCGAATACTGGTGGGATTCGCGTGGGAAAACTCGGAA
AATGCACTCAGGCTGGAGGTATTTTTTCGGAGAGATTTCGGGATAACTGG
GGACCTGTGCGGCAAGAAACATTGTCCCGAATTGTCCCGTGGGTGGAAAA
TCTCTCCGACGATTACGGTACTTACATGCAGGTCAAACCACATCTTGCCT
GTGCCGTTCAAACCGTATTATGCGTGTGACGCATGTGCCGTCATGCGTCC
CTCCCCACAGGCGAACGATGAGCTGGGGGCCAAGTCCGCTGGGCACTGGG
ACGCTCTGGCCCAGGGGAGCAACAAGCAGGTGAGGCGTGTTTCCCAATGC
CCTTTTCTTTCTTTCCCCCCCTCTTTGTTTTCATTCTTGATGTGATAATC
ACTAGTACTTCGAAGTACAAAGTAATACGATAACACTCAATTCTTAGATG
GGAGAACCACTAATACGAGAACACTCTATCTCACACGCGTGCGATTTTAC
CTCGTTACAATTTACATGAATCATCGCCGCCCGGCCAGCCTCTCCCCCCA
CGACGAGACGAGCAACAACAGCAACGAAACAGAAAACCAAGCTTTCCGCC
CGCCCGCCCCTGCTGCCGGCGCCGCGGCCGCCGCTGCCGCCGCGCCGTTG
CCCCCCCCCTGCTGCTGCGCCACTTGCCCATCCCTGCGAACGGAACCAAA
CGGCGCCTCAGACCTTTGCCAAGGCCTTGGAAAAGGCACGAAAGAACGCT
TTCTTCCTGGGCCTGGACAAGAGCTGGCTCGACACCTGACCCCAGGCGAC
TCGCTGCAGCTGCAACACTCCGGGGGGGGGGGCACATTGCGTTGCCATGG
GCTTAGGGTATGATAAGAAGCAGAGCGCGTTACTGTACAGTAGGTGGCAG
TTCTGCGACATCTCGTGGTGGTGAACACGTTCGCCATGGGCTGGGAAGTT
CTCGGCTTCCTGCTGGGCGATGATTGCAATAATCCGCAAACACACACTTG
TCAAGTACTGTGATTACTTCCGTATTGAACTGCAGTACAGGTACTTCGAA
GTACAATATACTCTTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCTC
GTCTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2915369..2921374-

>mRNA_S-ischiensis_contig9.20744.1 ID=mRNA_S-ischiensis_contig9.20744.1|Name=mRNA_S-ischiensis_contig9.20744.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2064bp|location=Sequence derived from alignment at S-ischiensis_contig9:2915369..2921374- (Schizocladia ischiensis KU_0333)
ATGGCGCAGCGAATGGCGCGTGAGGGAGGTGCCGCGGTACATGAGGCTTT
TTCGAGGGTGAGGGGCACGGTCCTGGAGCAAATGGCCAAGCATATGCCTA
AGAGGGAGCGCGCTTTCCTGGCGGAGCGGTGGGGCTTCTTCGCGCCAGAC
TCGGCCCCACAAGGCGCGCAGGCGCCCGCGGCGGCGGCGGAGGCAGCGGC
GCCGGCCAAGGTCCCCGTTCCCCAAGAAAAGGCCGCTGTGGTCGGGCCGG
CTACAGTGTCAGGGAAGGCATTGGAGCCCGAGGCGCACCCCACGCTGGGG
GAACTGGTGGCTGACATGAAGTACAAGCGTGTGTACCGCTCGTCCCTCGA
GAGTCTGGTCAACGTGCCCGTGTGGGAGAGGCAGCGCATCCTTCGGCCAC
ACAGGGCGAAGTTGATTGCCGACGCGCACATGAAGAAGGGGATGGCGCAG
CGAATGGCGCGTGAGGGAGGTGCCGCGGTACATGAGGCTTTTTCGAGGGT
GAGGGGCACGGTCCTGGAGCAAATGGCCAAGCATATGCCTAAGAGGGAGC
GCGCTTTCCTGGCGGAGCGGTGGGGCTTCTTCGCGCCAGACTCGGCCCCA
CAAGGCGCGCAGGCGCCCGCGGCGGCGGCGGAGGCAGCGGCGCCGGCCAA
GGTCCCCGTTCCCCAAGAAAAGGCCGCTGTGGTCGGGCCGGCTACAGTGT
CAGGGAAGGCATTGGAGCCCGAGGCGCACCCCACGCTGGGGGAACTGGTG
GCTGACATGAAGTACAAGCGTGTGTACCGCTCGTCCCTCGAGAGTCTGGT
CAACGTGCCCGTGTGGGAGAGGCAGCGCATCCTTCGGCCACACAGGGCGA
AGTTGATTGCCGACGCGCACATGAAGAAGGGGACGGCATCCCTGCCGGGG
GTTATCACCCTGGTGAGCCGCGCGGACAACCTTGGCATCGTGGACGGCCA
GCACCGCGTGGGGGCCCTCATGCTCATGTCGGACGCGGGGGCGTGGGAGA
GGCGGGAGCGCAACATCTTGGTGGATGTGTTCCCGGCGGAGACCGACAAG
GAGACGGCATCCCTGCCGGGGGTTATCACCCTGGTGAGCCGCGCGGACAA
CCTTGGCATCGTGGACGGCCAGCACCGCGTGGGGGCCCTCATGCTCATGT
CGGACGCGGGGGCGTGGGAGAGGCGGGAGCGCAACATCTTGGTGGATGTG
TTCCCGGCGGAGACCGACAAGGAGGTGGCCAGCCTCTTTGCGGAGATCAA
CCGCGCAGAACCGGTCAAGCTGGTGGACATGCCAGGGGGTGAGGGGGCCG
ACGATGCCCTCAAAGCAGCGCTGGATGATGCCAGTGCGGAGCTCGCACAG
GTGGCCAGCCTCTTTGCGGAGATCAACCGCGCAGAACCGGTCAAGCTGGT
GGACATGCCAGGGGGTGAGGGGGCCGACGATGCCCTCAAAGCAGCGCTGG
ATGATGCCAGTGCGGAGCTCGCACAGCGATACAAGGAGATGTTCAAGCCC
TCGCAGCGGTGCCGACCGCCGCACGTGAACATCGACAACTTGCGCGATGA
GCGATACAAGGAGATGTTCAAGCCCTCGCAGCGGTGCCGACCGCCGCACG
TGAACATCGACAACTTGCGCGATGAGATATTTCGGAGCGAGCTGATCACG
CGACACGGCCTCAAGACCACGCCCCAGCTGGTGGAGTGGCTGCTCAAGAT
ATTTCGGAGCGAGCTGATCACGCGACACGGCCTCAAGACCACGCCCCAGC
TGGTGGAGTGGCTGCTCAAGGCGAACGATGAGCTGGGGGCCAAGTCCGCT
GGGCACTGGGACGCTCTGGCCCAGGGGAGCAACAAGCAGGCGAACGATGA
GCTGGGGGCCAAGTCCGCTGGGCACTGGGACGCTCTGGCCCAGGGGAGCA
ACAAGCAGACCTTTGCCAAGGCCTTGGAAAAGGCACGAAAGAACGCTTTC
TTCCTGGGCCTGGACAAGAGCTGGCTCGACACCTGAACCTTTGCCAAGGC
CTTGGAAAAGGCACGAAAGAACGCTTTCTTCCTGGGCCTGGACAAGAGCT
GGCTCGACACCTGA
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