mRNA_S-ischiensis_contig9.20742.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20742.1
Unique NamemRNA_S-ischiensis_contig9.20742.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20742.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.240e-21
Identity = 88/226 (38.94%), Postives = 123/226 (54.42%), Query Frame = 3 
Query:    9 ERRMLVGRRVAQVCMKMDIATGGAILLHMYPQVIKNLRSAPSFRA-----------------KLLPAARFGVLVSVLVQVGMLRNEQLQDDIRIFKDLKVGGVELGWVEAFLDSVLFVKMAALPFPWWVALLGPVAAMLNPASPGAQEVLKSESPAKALGMKVLNFAIGRKPGADDXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAGPRKLKRAAKVAAVVAGLTD 635
            E+R+L+GRR+AQ C K+++     + L + P V++    A    A                 + LP  +  VLV   V++ +++N QL+DD+RI   LK+ G +  W+E  +DSV+F  M   P  WW  LL  VA  L P     ++V+ S+   K LGM +LN AIGR PGADD XXXXXXXX         XXXXXXXX       ++ + AKVAAV  G++D
Sbjct:  449 EKRLLLGRRLAQACFKLEMVMPFGVALRVLPAVLQTSLGAGGGVADGEGAEGAAAGAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKIRGYDCEWIERGVDSVVFGMMVGCP--WWAGLLA-VAFSLLPNHEVTKKVMASDDKLKTLGMTLLNKAIGRTPGADDDXXXXXXXXGSGEKDGSSXXXXXXXXXXS----RMAKIAKVAAVATGVSD 667
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM7_ECTSI1.240e-2138.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2901305..2906815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size695
Cds size624
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.8038309-UTR-S-ischiensis_contig9:2901304..29013211622817398.8038309-UTR-S-ischiensis_contig9:2901304..2901321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2901305..2901321 +
1695741084.7719915-UTR-S-ischiensis_contig9:2901304..29013211695741084.7719915-UTR-S-ischiensis_contig9:2901304..2901321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2901305..2901321 +
1622817398.878406-UTR-S-ischiensis_contig9:2906761..29068151622817398.878406-UTR-S-ischiensis_contig9:2906761..2906815Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2906762..2906815 +
1695741084.8387747-UTR-S-ischiensis_contig9:2906761..29068151695741084.8387747-UTR-S-ischiensis_contig9:2906761..2906815Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2906762..2906815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.8178828-CDS-S-ischiensis_contig9:2901321..29013481622817398.8178828-CDS-S-ischiensis_contig9:2901321..2901348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2901322..2901348 +
1695741084.7826793-CDS-S-ischiensis_contig9:2901321..29013481695741084.7826793-CDS-S-ischiensis_contig9:2901321..2901348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2901322..2901348 +
1622817398.8295696-CDS-S-ischiensis_contig9:2901807..29019261622817398.8295696-CDS-S-ischiensis_contig9:2901807..2901926Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2901808..2901926 +
1695741084.794263-CDS-S-ischiensis_contig9:2901807..29019261695741084.794263-CDS-S-ischiensis_contig9:2901807..2901926Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2901808..2901926 +
1622817398.8427022-CDS-S-ischiensis_contig9:2903852..29039431622817398.8427022-CDS-S-ischiensis_contig9:2903852..2903943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2903853..2903943 +
1695741084.8044353-CDS-S-ischiensis_contig9:2903852..29039431695741084.8044353-CDS-S-ischiensis_contig9:2903852..2903943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2903853..2903943 +
1622817398.8563228-CDS-S-ischiensis_contig9:2904744..29049181622817398.8563228-CDS-S-ischiensis_contig9:2904744..2904918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2904745..2904918 +
1695741084.8144228-CDS-S-ischiensis_contig9:2904744..29049181695741084.8144228-CDS-S-ischiensis_contig9:2904744..2904918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2904745..2904918 +
1622817398.8672745-CDS-S-ischiensis_contig9:2906548..29067611622817398.8672745-CDS-S-ischiensis_contig9:2906548..2906761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2906549..2906761 +
1695741084.8273442-CDS-S-ischiensis_contig9:2906548..29067611695741084.8273442-CDS-S-ischiensis_contig9:2906548..2906761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2906549..2906761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20742.1prot_S-ischiensis_contig9.20742.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2901322..2906761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20742.1

>prot_S-ischiensis_contig9.20742.1 ID=prot_S-ischiensis_contig9.20742.1|Name=mRNA_S-ischiensis_contig9.20742.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=208bp
MLVGRRVAQVCMKMDIATGGAILLHMYPQVIKNLRSAPSFRAKLLPAARF
GVLVSVLVQVGMLRNEQLQDDIRIFKDLKVGGVELGWVEAFLDSVLFVKM
AALPFPWWVALLGPVAAMLNPASPGAQEVLKSESPAKALGMKVLNFAIGR
KPGADDDDDDDDDDDDNGSDGNGAGSDEEEEGGEGAGPRKLKRAAKVAAV
VAGLTDG*
back to top

mRNA from alignment at S-ischiensis_contig9:2901305..2906815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20742.1 ID=mRNA_S-ischiensis_contig9.20742.1|Name=mRNA_S-ischiensis_contig9.20742.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5511bp|location=Sequence derived from alignment at S-ischiensis_contig9:2901305..2906815+ (Schizocladia ischiensis KU_0333)
GGGAGGACGAGCGGCGGATGCTGGTGGGGAGGAGGGTGGCGCAGGTGGGG
CAGTTGCGGCCACTGAATTGTTGCGGCATTGCTCTCTGCGCGTACTCGCG
TCGACGATATCGACGATGCCATGTGACGTGATGCGCAACTACAGAAAATT
TTAGTGCAGATCACATCACATCACATCACAGCGTGTGTGGACGAGCGGCG
GATGCTGGTGGGGAGGAGGGTGGCGCAGGCGGGGCGGTGATTCATATAAA
TTGTACAGTAGCGAGGTACAATCGCACGTGTGTGAGATTGAGTGCTCTCG
TATTTGTGGTTATGGCGCAGGTGCGGCAGCGGCCACTGAATTGCTACGGC
ATTGCTCTGTGCGCGCTCGTGTCGACGATGCGATGTGATGCGAAACTACA
GGAAATTTGAGTGCGCATCACAACCTCCCCCCTCTCCCCCCACCATCCCC
ACCCTTCCTCGCAACTGCCCCCCCCCCCCTGCACCCCTCGTTATTCCGGC
CAGGTGTGCATGAAAATGGACATCGCCACGGGGGGGGCGATACTGCTCCA
CATGTACCCGCAGGTCATAAAGAACCTGCGGTCCGCCCCGAGCTTCCGGG
CGAAACTGCTGCCGGCCGCCAGGTTGGTTTCGGTCCATGGAATTAGCACG
ATACTAGCGCCGTTAGAGAGGGCGGGGAGGCCTGGGTGCCTGTACTGGCA
ATGGCAGAAATAGCAGAAATACCTAAGGTGGAGAGTAATGAGGGGAGCTT
CCGGGCGAAACTGCTGCCGGCCGCCAGGTTGGTTTCGGTCGGCGAGCTTG
GCCTGATGTTAGCAGGGTTGGCACTGAACCCCTAAGTGGTGCCCTCTTAC
TCGAGTAGGAGTAGGCCCTTAATCAGAGGTAGTTAAGGGTAGCTAGAGCT
AAAATGAAGGCTAATTAGGCCCTATTAGCCTCTAAGTGCCAACCCTGGAT
ATTAGCGCTGTTAGAGAGGGCAGTGAGGCCCGGGGGGTTAACTGGCAATG
GCAGAAGTAGCACAAATACCTAAGGTGTAATGAGGAGGGCTAGAGATATC
TCCTACAGTAGACTGAGAGTGCTATAAGGGGCTGTACAGAGTCTTGTATA
CGGGACAAGAGGCCATGTGTGTCGTTTTAACATCATGGATACAGATGTTC
TGACAAGCAATAATATGCGTATACAGAAGCCTGGGGTCGTCACGAGAGAC
CTGTGCTGGAGGCGAACGCGTGGAACGATCGGAAATGGGCTTAACATCGC
CCTGATAAACAGAAATACGTCTGCGATTCACAGGGGACCGCAGTCTGTCA
GCTCGCCCCTCCTTTCTGCATTTTCCTGCCGGGCCCAGCGACGGGGGGGG
TTCTGGTGCCCCCCCCCCGGTTTTGTGACGGGGCCCGGAAATCGCTTGTG
TGTTGCCGGCTCATCGCCTGCCTGGTGTGTTTTTGGTTGTCTATGGGTAC
TGTATTACCAGGAACAACACGGGGCGAGGTGCAGGCCGCATCCCTAAAGA
CCTCAACAGTGGCAATGATGTGATGTGATGTGATGTGGTTTGTGCTCTAA
TGTTCAGTAGTTTGACATCACATCACATCACATCAAACCACGTCACGAAA
GACCGCAACAGTGGCCATTCCTGATAGCTTGCCAGGGGGGGTTTGTGTGG
GACAAAGGGGAAGAGGAGGAGTAGGGCAGGAACTGTGTCTGAGGTGCTGT
GAGACAGTAGAAGTATGCAGGCATAAGGAATGCTTCTTCTACTTGGCGAG
GCCCCAACGGCCGAAAGGCTACAATACGTGCCTGATCGACGGTCCAGCAC
GAGGTAGTACTGGGCCGATGGATGGACGGTCGGTTGGTGGCATGCACAGG
ACATGGGGGGGTAACCCTGTCCTGCATGGTTACGGATGTACTTAGGGTGT
AACTGTCGGCATTGCACGCAAGGCTATGTCGCAAGACAAGCCAATGAGTA
CATATACTCCGAAGCATACTTCTCGGAACGAAGACCTTCCCCGGCGAGCT
ACGGAAGGGCCGCTGTTGATGTCTTAGTGAGTGACGTGGCCTGCACATGC
ACCTGGCCATGCGTCCTTCCTTTCAATACCTACTCCGAGGTGCATGAGCA
TGTACTTGGACGTGCTTGTTCTACTGTACTGCACCTACAGCACTACCAAG
TACTTTGCGCGCACACTGGAGTAGGTAGTACCCGTACTGCTATGACTTGA
CCAGTGATGGAATATCTAAGCAAATCAACCTACTTCGTATTTGTCATATT
TATTGGTACTGATCTGTTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCC
CCGTGCCAAAAGGCTCGTCTCAAAACAGGACTCATCTATATATCTATCTA
CAGTCGATATTCGGTACGGAAGTAGCTCGACCCACACGAAATCCAAGCAG
TTAGAAACGCCGCCCACAAAGTCATTCGAGCCGACAACTATCTACTTATA
GATATTCCATCATTGGACTTGACCCCCGTCTACTGTCAGTGACCCCACCC
GCGGACCCTAAACCAAACCAACCCCTTCACCGCCGTCTTCTGTGGCAGAT
TCGGGGTGCTGGTGAGTGTTCTTGTCCAAGTGGGGATGCTCCGCAACGAG
CAGCTGCAGGACGACATCAGGATATTCAAGGATCTCAAGGTCAGAAGGGC
GGGCTGGTGTGTGCTTGCCGACCGCTGCCGGCCAGCATCGCGTTGTGCTT
GCCGTAGTCCCGGGCCCGTCGACCACTATAAGTAGGCCGTTGACGACGTG
TGTTGTGAATGTCACACTGCAGTGTTTTGGAGTACGCGCTTCTGAAGAAG
TAGGTACTTCTATCACATGCCGTACATCACATCGCACGAATCTTGATGCG
ACGTGATGTGACTTGATGTCAAACTACTGTAACTTAGAGTAGGTGCAGTA
CAGTGCGTTAAGAGTACGTATCACACTACATCACATCGCATCACATCACA
TCACTGATGTGATGCGATTTGATGTCAAACTACTGTAGCGGTGATGTGAT
TTGATGTCAAACTACTGTAAGTGCAGTACAGTGTGCTAAGAGTACACATC
ACATTACATCGCATCGCATCGCATCACATCACCCCACTGATGTGATGCGA
TGTGATGTCACACTACTGTAACGGTGATGTGATTTGATGTCAAACTGCTG
TAAGTGCAGTACAGTGTGTTAAGAGTACATATCACACTGCATCGCATCGC
ATCGCATCACATCGCACCACATCACATCACAACACACCCGTCACACACAC
ATCTTGGCCGCGGCAGGTCGGCGGCGTCGAGCTTGGGTGGGTGGAAGCCT
TCCTGCTCTTTCGTGCTCTTCGTCAAAAACTTCCGTGCTCTGCATCAAAA
TGGCAGTCTCTTTTCTCTGTGCTAAGAGTACATATCACACTACGAGTACA
TCACAGAACATCACATCACATCACATCATGACCGCGGCAGGTTGGCGGCG
TGGAGCTCGGGTGGGTGGAAGCCTTCCTGGACAGCGTGCTCTTTGTCAAA
ATGGCAGCGCTGCCGTTCCCGTGGTGGGTGGCCCTGCTGGGCCCGGTGGC
GGCCATGCTCAACCCCGCCTCCCCAGGCGCGCAGGAGGTGCTCAAGAGCG
AGAGTCCCGCCAAGGTGGGTCTATTTGTGCTGTTGATTGCTTTGCACTTC
TTCTGCTACGTCGAAGTATAGCACTATTTTGAAGGTACCGCCTCCCCAGG
CACGCAGGAGGTGCTAAAGAGCGAGAGAACCGCCAAGGTGGGTCTATTTG
CGCTGGTGATTGCTTAGCACTTCTTTTGCTAGTTCGAAGACAGCACTTTT
TGAAGGTACTCTATTTTGGAGCTCTAGGTGAAGGTGCCTACTGTAGCTAC
TGTAGGTGGGTCTATTTGTGCTGTTGATTGCTTAGCACTTCTGTTGCGGC
CTACTTCGAAGTACAGCACTAGATTGAAGGTACTTTAGTGCCTTCCATAT
GTTTTGGGAGGGTTGATTGCTTAGCACTTCTTTTGCTGCTTCAAAGTACA
GGACTATTTTGAAGGTACCGCCTCCCCAGGCATCTACCGCCTCCCCAGGC
ATGCTGGAGGTGCTGAAGAGCGAGAGCCCCGCCAAGGTGGGTCTTATTGT
GCCAGGGTTGGTACTTGGAGGTTAATTGCGGCCTATTTAGCCTTCATATT
AGGTCAAATTACCCCTAATCAACTCTAATGAAGGGCCTAGAAGGGCACCA
CTTAGGGGTTAAGCGCCAATCCTGATTTGTGCTGTTGATTGCTTAGCACT
TTTTTTGCTACCTACTTCGAAGTACAGCACTCTAGAGCTATTGAAGGTAC
TTTAGCGCCTTCCTGATGTTTTGGGAGGCACATGTTGCGGCTTTTGGTGC
GTAAAAGCATTGTTATTTTCGTTTGGGGGAGCTCAACCCCCCCTCCGCTG
GCATGCAGGACATGCTGAAGAGCGAGAGCCTTGCCACAATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCATGCGTGTGTGTTTGTGTGTGTACGTAC
GTACGTGCGTGTGTTTGTGTGCGCGTGTGTGTGTGTGTGTGTGTTCGTGT
GCGTGTGTGTGTGCGTAACCTGTGTGTTCGTGTGTGCGCGCGCGTGTGTG
GTTGTGTGCATGTGTGTGTGTGTGTGTGCCCCGCCGGTTGTTATGGCACT
CTTTACATTCTTCAGTGCTTTCGTGTGGAAAGAAAAGAAGCGAGTGGAAA
ATAGAGGTTTTCCTACCTTTGCGTCTTCAGCACTTTTCTTTGTTGGGGGG
TGGGGGCCTGAACCCTGCCCCCCAGCGTGCGGGAGGCCCGAAGAGCGGGA
GTATTAACCCTTTTACCCCTGGGGTCCGTATATTCATAGGATTTGTGTAA
GTCCAACTTAGCAGGGGTAAAAGGGTTAACATTTTTCATAACTTCCGCTC
GAACTGCATTGTAATGGGGCACTTTCGGCCAGTCAGAGGTGCTTACGGGC
GAGAGCCCCGCCACAGGGTGCTTGCGTGGCACTGGATGCTTCCAAGTACT
TCCAAGTACTTCCGGAAGTACTTCGAAGCGTATATTAATGCCACCGCCAC
AACCCGCACACACCCGCCGGCCCTGAACCCCCGCCCCGGCCTCCCCCGGT
CAAGCACACTCAATCCTTAAATGGGACAACCATTAGTACGAGAACACTCA
ATCTCACACACGTGCGATTGATTGTACTCGAGTACCTCGTTACAATTTAT
ACCAATCACCCCCCCCCCCCGGTCGCGCCTGTCCCACAAACCAGGCTTTG
GGCATGAAGGTGCTCAACTTCGCCATCGGACGCAAGCCGGGGGCAGACGA
CGACGACGACGACGACGATGACGACGACGACAACGGCAGCGATGGCAACG
GGGCGGGTTCCGACGAGGAAGAGGAAGGCGGGGAGGGGGCCGGGCCTCGG
AAGCTGAAGCGGGCGGCCAAGGTGGCGGCGGTGGTAGCGGGCCTGACGGA
TGGCTGATTTTCATGTCCGCCGCCATCCAAAGGTGTGCATGGGGTTTGGT
GGGCCGGGCTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2901305..2906815+

>mRNA_S-ischiensis_contig9.20742.1 ID=mRNA_S-ischiensis_contig9.20742.1|Name=mRNA_S-ischiensis_contig9.20742.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig9:2901305..2906815+ (Schizocladia ischiensis KU_0333)
ATGCTGGTGGGGAGGAGGGTGGCGCAGATGCTGGTGGGGAGGAGGGTGGC
GCAGGTGTGCATGAAAATGGACATCGCCACGGGGGGGGCGATACTGCTCC
ACATGTACCCGCAGGTCATAAAGAACCTGCGGTCCGCCCCGAGCTTCCGG
GCGAAACTGCTGCCGGCCGCCAGGTGTGCATGAAAATGGACATCGCCACG
GGGGGGGCGATACTGCTCCACATGTACCCGCAGGTCATAAAGAACCTGCG
GTCCGCCCCGAGCTTCCGGGCGAAACTGCTGCCGGCCGCCAGATTCGGGG
TGCTGGTGAGTGTTCTTGTCCAAGTGGGGATGCTCCGCAACGAGCAGCTG
CAGGACGACATCAGGATATTCAAGGATCTCAAGATTCGGGGTGCTGGTGA
GTGTTCTTGTCCAAGTGGGGATGCTCCGCAACGAGCAGCTGCAGGACGAC
ATCAGGATATTCAAGGATCTCAAGGTTGGCGGCGTGGAGCTCGGGTGGGT
GGAAGCCTTCCTGGACAGCGTGCTCTTTGTCAAAATGGCAGCGCTGCCGT
TCCCGTGGTGGGTGGCCCTGCTGGGCCCGGTGGCGGCCATGCTCAACCCC
GCCTCCCCAGGCGCGCAGGAGGTGCTCAAGAGCGAGAGTCCCGCCAAGGT
TGGCGGCGTGGAGCTCGGGTGGGTGGAAGCCTTCCTGGACAGCGTGCTCT
TTGTCAAAATGGCAGCGCTGCCGTTCCCGTGGTGGGTGGCCCTGCTGGGC
CCGGTGGCGGCCATGCTCAACCCCGCCTCCCCAGGCGCGCAGGAGGTGCT
CAAGAGCGAGAGTCCCGCCAAGGCTTTGGGCATGAAGGTGCTCAACTTCG
CCATCGGACGCAAGCCGGGGGCAGACGACGACGACGACGACGACGATGAC
GACGACGACAACGGCAGCGATGGCAACGGGGCGGGTTCCGACGAGGAAGA
GGAAGGCGGGGAGGGGGCCGGGCCTCGGAAGCTGAAGCGGGCGGCCAAGG
TGGCGGCGGTGGTAGCGGGCCTGACGGATGGCTGAGCTTTGGGCATGAAG
GTGCTCAACTTCGCCATCGGACGCAAGCCGGGGGCAGACGACGACGACGA
CGACGACGATGACGACGACGACAACGGCAGCGATGGCAACGGGGCGGGTT
CCGACGAGGAAGAGGAAGGCGGGGAGGGGGCCGGGCCTCGGAAGCTGAAG
CGGGCGGCCAAGGTGGCGGCGGTGGTAGCGGGCCTGACGGATGGCTGA
back to top