mRNA_S-ischiensis_contig9.20730.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20730.1
Unique NamemRNA_S-ischiensis_contig9.20730.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2858324..2859165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.3e-10
Seed eggNOG ortholog2880.D7FMW8
Preferred nameRYR1
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGsKOG3533@1,KOG3533@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.1187208-CDS-S-ischiensis_contig9:2858323..28584611622817398.1187208-CDS-S-ischiensis_contig9:2858323..2858461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2858324..2858461 -
1695741084.302748-CDS-S-ischiensis_contig9:2858323..28584611695741084.302748-CDS-S-ischiensis_contig9:2858323..2858461Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2858324..2858461 -
1622817398.1293817-CDS-S-ischiensis_contig9:2858991..28591651622817398.1293817-CDS-S-ischiensis_contig9:2858991..2859165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2858992..2859165 -
1695741084.3165545-CDS-S-ischiensis_contig9:2858991..28591651695741084.3165545-CDS-S-ischiensis_contig9:2858991..2859165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2858992..2859165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20730.1prot_S-ischiensis_contig9.20730.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2858324..2859165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20730.1

>prot_S-ischiensis_contig9.20730.1 ID=prot_S-ischiensis_contig9.20730.1|Name=mRNA_S-ischiensis_contig9.20730.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
VAPLLGAVLGDDVDLAASLTTEQLAVVVREATRTRETALLVLLQRLVAPG
GVPSQDMQCRVLVALLQELPQVDFVRAYGWATPAAAAADTPWSEGSWGVA
GAVA
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mRNA from alignment at S-ischiensis_contig9:2858324..2859165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20730.1 ID=mRNA_S-ischiensis_contig9.20730.1|Name=mRNA_S-ischiensis_contig9.20730.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=842bp|location=Sequence derived from alignment at S-ischiensis_contig9:2858324..2859165- (Schizocladia ischiensis KU_0333)
GTGGCGCCGCTGCTGGGGGCGGTGCTGGGGGATGATGTAGACTTGGCGGC
GAGCTTGACGACGGAGCAGCTGGCGGTGGTGGTGAGGGAGGCGACAAGGA
CGAGGGAGACGGCGCTGCTGGTGCTGCTGCAACGGCTGGTGGCGCCGGGC
GGGGTGCCCAGCCAGGACATGCAGGTGAGGGGGTTGTCGAGCAAGCACGT
GTGCGGTGCTCTACTACAGTATATACATGTACTCACGTTGTGCTTGCCGT
AGTCCCGAGGCCATTGACCACGCGCCTTGATCGAGACGGAGCAGCTGTGA
GAGTTAGGGTTGGGTTAGGGTTAGGGTTTGGGGGTACTAGAATAAGTCCT
TATGGAATCTCGCTCCTGGCTTGGCTTGCCAGAGTGTTGTCTACTTACGG
CATAGTCCAAAAATGTGACGTGGTGCGATGTGATGTGATGTGATGTCAAA
CAACTGCACAGTTCCTTGGAGTACACATCACATCGCATTACACCACATCA
TTCATGAGAGAGCCTCACTTGGCTCGACAGAGCGGTGTCTAGCGCATGTA
ACAAACTGCGGGGAGAGGGGAAGGATAGCGGTCCCGAGCTCTCCGCGCCG
CGCTCAAGCGACTCCGATGCTTACATACATGCACCCCCCCTCCCTCCCTC
CCCCTCCCTCCCCCTTCCCCCCCCTCCCCCCCCTCCCTGCATCCATCATC
GCAGTGCCGCGTGCTGGTAGCCCTCCTGCAAGAGCTGCCGCAAGTGGACT
TTGTGAGGGCGTACGGGTGGGCCACACCGGCAGCGGCGGCGGCGGACACG
CCCTGGTCAGAGGGCTCGTGGGGTGTGGCTGGCGCGGTGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2858324..2859165-

>mRNA_S-ischiensis_contig9.20730.1 ID=mRNA_S-ischiensis_contig9.20730.1|Name=mRNA_S-ischiensis_contig9.20730.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig9:2858324..2859165- (Schizocladia ischiensis KU_0333)
GTGGCGCCGCTGCTGGGGGCGGTGCTGGGGGATGATGTAGACTTGGCGGC
GAGCTTGACGACGGAGCAGCTGGCGGTGGTGGTGAGGGAGGCGACAAGGA
CGAGGGAGACGGCGCTGCTGGTGCTGCTGCAACGGCTGGTGGCGCCGGGC
GGGGTGCCCAGCCAGGACATGCAGGTGGCGCCGCTGCTGGGGGCGGTGCT
GGGGGATGATGTAGACTTGGCGGCGAGCTTGACGACGGAGCAGCTGGCGG
TGGTGGTGAGGGAGGCGACAAGGACGAGGGAGACGGCGCTGCTGGTGCTG
CTGCAACGGCTGGTGGCGCCGGGCGGGGTGCCCAGCCAGGACATGCAGTG
CCGCGTGCTGGTAGCCCTCCTGCAAGAGCTGCCGCAAGTGGACTTTGTGA
GGGCGTACGGGTGGGCCACACCGGCAGCGGCGGCGGCGGACACGCCCTGG
TCAGAGGGCTCGTGGGGTGTGGCTGGCGCGGTGGCGTGCCGCGTGCTGGT
AGCCCTCCTGCAAGAGCTGCCGCAAGTGGACTTTGTGAGGGCGTACGGGT
GGGCCACACCGGCAGCGGCGGCGGCGGACACGCCCTGGTCAGAGGGCTCG
TGGGGTGTGGCTGGCGCGGTGGCG
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