mRNA_S-ischiensis_contig9.20571.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20571.1
Unique NamemRNA_S-ischiensis_contig9.20571.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20571.1 vs. uniprot
Match: A0A7S3UXN0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXN0_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 6.900e-10
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   70 RIGRENSTLLNTHLCKWRME-YAESQNIL-YHNVMGTAEVLDVAYRVPTTKEELGWCKKWGLSKVEMHGGPLLDEINKFLKDNDIAITKDF 336
            RIG + +T L+ HL  WR E   E + +  Y N++  A  L++   VPTTKEEL      G  KV + G  L++EINK+LK+ +I + K F
Sbjct:   46 RIGNKEATALSRHLRSWRKECIVEGKTVSGYWNLLNNATCLEIGSMVPTTKEELRGIPGMGAQKVALIGDQLIEEINKWLKEENIELQKPF 136
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UXN0_HETAK6.900e-1040.66Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1485454..1489111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHRDC-like
Ec32 orthologEc-13_001000.1
Exons5
Model size617
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20571.1prot_S-ischiensis_contig9.20571.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1485454..1489109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817386.3121078-CDS-S-ischiensis_contig9:1485453..14855001622817386.3121078-CDS-S-ischiensis_contig9:1485453..1485500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1485454..1485500 +
1695741074.7589371-CDS-S-ischiensis_contig9:1485453..14855001695741074.7589371-CDS-S-ischiensis_contig9:1485453..1485500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1485454..1485500 +
1622817386.3247843-CDS-S-ischiensis_contig9:1486856..14870531622817386.3247843-CDS-S-ischiensis_contig9:1486856..1487053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1486857..1487053 +
1695741074.7709951-CDS-S-ischiensis_contig9:1486856..14870531695741074.7709951-CDS-S-ischiensis_contig9:1486856..1487053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1486857..1487053 +
1622817386.3368323-CDS-S-ischiensis_contig9:1487342..14874791622817386.3368323-CDS-S-ischiensis_contig9:1487342..1487479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1487343..1487479 +
1695741074.7827525-CDS-S-ischiensis_contig9:1487342..14874791695741074.7827525-CDS-S-ischiensis_contig9:1487342..1487479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1487343..1487479 +
1622817386.350595-CDS-S-ischiensis_contig9:1487775..14878421622817386.350595-CDS-S-ischiensis_contig9:1487775..1487842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1487776..1487842 +
1695741074.8014894-CDS-S-ischiensis_contig9:1487775..14878421695741074.8014894-CDS-S-ischiensis_contig9:1487775..1487842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1487776..1487842 +
1622817386.3627465-CDS-S-ischiensis_contig9:1488942..14891091622817386.3627465-CDS-S-ischiensis_contig9:1488942..1489109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1488943..1489109 +
1695741074.8127925-CDS-S-ischiensis_contig9:1488942..14891091695741074.8127925-CDS-S-ischiensis_contig9:1488942..1489109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1488943..1489109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20571.1

>prot_S-ischiensis_contig9.20571.1 ID=prot_S-ischiensis_contig9.20571.1|Name=mRNA_S-ischiensis_contig9.20571.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=205bp
SNRRLATRKGTGFSKRARKGIVSRIGRENSTLLNTHLCKWRMEYAESQNI
LYHNVMGTAEVLDVAYRVPTTKEELGWCKKWGLSKVEMHGGPLLDEINKF
LKDNDIAITKDFIKAHGDEEGGEEAAATGQHAFQGGDGLAGAAEDHDPWG
PRGVSHEPQSGGGLASPADSFSSKFFSLSRGGSALAAWEDSAGAGNSRGD
YAGGG
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mRNA from alignment at S-ischiensis_contig9:1485454..1489111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20571.1 ID=mRNA_S-ischiensis_contig9.20571.1|Name=mRNA_S-ischiensis_contig9.20571.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3658bp|location=Sequence derived from alignment at S-ischiensis_contig9:1485454..1489111+ (Schizocladia ischiensis KU_0333)
AGCAACCGCAGACTGGCGACTCGGAAGGGGACGGGTTTCTCCAAGAGGTG
GGAGGCGTTTGGCTTCAGACGAAGCCTGAGTAGTGCTTTGAGAATGTGCT
CGTCGTTGGATCGGATCGGATTGGATCGGATCGAGGGCTTTCATTGCGAT
TGTACTTCGAAGTGCCTCGTTACAATTTTTGAATTATTGTGATGGCATGC
GAGTTCTGGGCCCCGTCCCAACAACCTAAGGTGGGGAATTTATATGAATC
ATCGAGGGCTTTCGGTCGCTGCTGCCGGGTCGTGTCGTTGAGAAATCGCT
GCAGTTGTTGGCGAGGAGTCCGACGGAGCAGAGCTGATCGATCCCCGGTT
GTCTTCTTCCTACAGTACGGGTGCGGAGAGTGCCTCGATTGGCCTGCAGT
AAATAGAGTATTTTAGGGAAGAACACGGGGCGAGGTGCGGGCCACGTCAC
TAGAGCCCTCAACAATGGCCCTTCCTTAGCTCGCCAGGGGAAAGGTTGCG
TGGGGAAGGGCAGGTGGACGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGG
AGGAGGAGGGATGGGGGGAAAACGAGGAAGAGGAATGGGACAGGGCGCGT
GTGTGCACCCCTACAGGAGTACAGTGAGTAGGTGGGTGCTTCGAAGTAGC
TGAGAGGGTGCATGGATGATGGCTCACAAGTGCTGGGTGTGTATGACACA
AGTATTGTTGCATGTACTTCGAAGTACTCACGTGGTGCTTGCCGTAGTCC
CGATACCATTGAGCACGCGCCTCGGTCGAGACGGAGCAGGAAGTACTGTT
GTGAGCTTCAAAAGTGCTTCCAAGTACGAAGTAGTTTCTTTTGGGGGGGG
TTGGGGTCGGCGTACCGTTTGCGGCGGGGCGGTCAGCCGCGCTAACTCTC
GAGGTACTTCGAAGTAGGTTTTACGGGTTGGCGGAGCTGAAACTCGAGGC
ACGTTTACATTTGTGCAGCGGTACTCGAGGTATGTTCATTTTTTTGCACG
GAGATAAACAAGCGGGTGGAAAAAAAGAGGTGTCTCCGAAGTTTATGTTT
GTGGAGCGGTGCTTGTGTCGTAGCAATGCCCTCCAAGGGTGAACCCGGTC
TATCAATACCCTTCCAAGAAGAGGTAATGTTAGTTGTGCCACGACAACGA
AGGGATGTTGTGCTCAACCATATTGCATGTATCCTCCTCCTCCCCCTGCT
CCTCCCCCTCCCTCCTCCTCCTTCCCCTCCTCCTCCTCCTCCCCCTCCTC
CCCCCACCCCCCACCCCCCTCTCTCCTCCTCTTCCCCTCCTCCTCCTCCT
CCTCCTCCTCGCCCTCCCCCCCCTCCTCCCCCTCCCCCTCCTCCTCCCCC
CCGCCCCCCTCCTCCTCCCCTTCCTCCTCCCCCTCCTGCTCCTCTGCAAG
CAGGGCCAGAAAGGGGATCGTCTCCCGCATCGGGCGGGAGAACTCGACCC
TCCTCAACACGCACCTCTGCAAGTGGCGCATGGAATACGCGGAGTCGCAG
AACATCCTGTACCACAACGTGATGGGGACGGCGGAGGTGCTGGACGTGGC
GTACAGGGTCCCCACCACCAAGGAGGAGCTGGGCTGGTGCAAGAAGTGGG
GTGAGTGATTCTGACTGGATGAAATGTGTGGGTTGGCTGACGTGATTGGT
TGATAAAGTGGGGGGCCGGGGCCGGGGCCGGGGGGGGGGGGGTGCTCATG
ATGTTCCTGCCGTAGCCATGCAAATGGCCATTGGTGGGGGGGTTACTCAT
GAGTTCCTGCCATGGCCATATGGCCGTCGCCTATGGCCGTTATTGTAAAT
GTGCGGTTCTCCCCCAAGGGGCGAATTTTTTGAGCAGCGTGAAATTGCCG
TCTTGCTCGAACGAATCTGTCGCCGGGCGGGCACCGCAGGCCTGTCCAAG
GTGGAGATGCACGGCGGGCCGCTGCTGGACGAGATCAACAAGTTCCTCAA
GGATAACGACATCGCCATCACCAAGGATTTCATCAAGGCGCACGGGGATG
AGGAGGGGGGCGAGGAGGCGGCGGCGGTGAGAGGCTGGGAGGGATGAACT
CTTGGATGAGCTGGGTTTGATCTGGCCAGAGTATTTGGGCTGTGATGCAA
AAACGCGAGAACCTCTCCCACCAGCTGGACCCGGGCTATGGCGCAAGGCA
AACCAATGACTACATTCATCCTGACTAGCTAAACGGCAGGAACACCGGGA
TGATTGATCCTGATCGCTAAGTAGGTCGCTGGACAATGCCAGTAGTGATG
TACTGAAGTAAGTTTGGAAGTATCAACACTCGTGCTGGTAGCGACCCTTT
CTTTGCCCACCCGTGCGTGCAGACGGGGCAGCATGCCTTCCAAGGTGGGG
ACGGCCTGGCTGGGGCGGCTGAGGACCACGACCCTTGGGGTGAGAGACCG
CCGCCGCCACCTGGGGCGCATTGCCCCCCCCCCCCTAGCCATGGCACAAA
ACTACGATAGCTATTTTTGGTGCCCGGGCCGCCCTATGAAGGACGCATCG
GATGACCGTAAAACTTTGACACATGAAAGAGCTCAATGAGTATGTTCATT
TGCGCTATAGTTTCACGTCACAACGTGACATGGACAGAGCAAAATCGATG
TTCGATAAAACTGTTTGGGCAAAAAATATTCGAGCAAAAAAAGTTGCACT
TTTGTAGCATGGTTAGCATGGAGCTACCTATTCGAAGTACAGCAGGGTCT
GAGAAAAGCCAAGCGAGTTGCGGTCTGCAGCGCGCCATACCACAGCGATG
ACCTCAACAGTGGCCTGTCGTTTTACGCGGAGGAAGTAGGATATCTGAGA
AAAGCCAAGCGAGTTGCGGTCTGCGGGGCTACTGTCCATATCACAGCAAT
GACCTCAACAGCGGCCTGTCCTTTACGCGAAGGATATGTGATGTGATTTA
TATGTCATGTGATGTGCACCCTGATGCACTTCGACGCAAGCGCTACAGGG
GTGCAGCACCACGAGTGCTGTGTGCCACTATGTTGCACTGTGTGATCGTC
TTGGAGGTAGGCACTTCGAAGTACATACATATCCCGGGGGCATTGACTCA
CCGGGTGTTGACTTTAAGCGGGGACGACTGTACTGTACAGTAGTGATTCG
AGGTACTCGTACAGCGGTCCTCAACTACTGTACACTTGCTACTGTACACT
TAGAGTATGCCGTAACCGATTCCACACCCTCGCCCTCGCCCTCCGCCCTC
GCCCTCATGAATCACTGCTCCACCGTCGCCCTCCTAATATGACACTCAAT
CTCACACACGTGCGATTGTACTCCTCGTTGCAACTTTTTAATGATTTTGA
TGGCATGGGAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCT
CCGGAAGCCCTTCTTGGCTCGCAGGGCACAAACATCAGGCAAAGACGCAA
CAAAAATGTGGGCATTGCAGGGACAATTTACATGAATCACCTCCCAATCC
CCAATCCCAACCCCTAACCCCTCCGCCACGGCATGAAAGGACCCCGGGGG
GTCAGCCACGAGCCTCAGAGCGGGGGCGGGCTTGCATCCCCCGCGGACAG
CTTCTCTTCCAAGTTCTTCTCCCTAAGCCGGGGCGGCTCGGCCTTGGCGG
CCTGGGAGGACTCCGCCGGCGCCGGAAATAGCCGCGGAGACTACGCCGGG
GGCGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1485454..1489111+

>mRNA_S-ischiensis_contig9.20571.1 ID=mRNA_S-ischiensis_contig9.20571.1|Name=mRNA_S-ischiensis_contig9.20571.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1230bp|location=Sequence derived from alignment at S-ischiensis_contig9:1485454..1489111+ (Schizocladia ischiensis KU_0333)
AGCAACCGCAGACTGGCGACTCGGAAGGGGACGGGTTTCTCCAAGAGAGC
AACCGCAGACTGGCGACTCGGAAGGGGACGGGTTTCTCCAAGAGGGCCAG
AAAGGGGATCGTCTCCCGCATCGGGCGGGAGAACTCGACCCTCCTCAACA
CGCACCTCTGCAAGTGGCGCATGGAATACGCGGAGTCGCAGAACATCCTG
TACCACAACGTGATGGGGACGGCGGAGGTGCTGGACGTGGCGTACAGGGT
CCCCACCACCAAGGAGGAGCTGGGCTGGTGCAAGAAGTGGGGGCCAGAAA
GGGGATCGTCTCCCGCATCGGGCGGGAGAACTCGACCCTCCTCAACACGC
ACCTCTGCAAGTGGCGCATGGAATACGCGGAGTCGCAGAACATCCTGTAC
CACAACGTGATGGGGACGGCGGAGGTGCTGGACGTGGCGTACAGGGTCCC
CACCACCAAGGAGGAGCTGGGCTGGTGCAAGAAGTGGGGCCTGTCCAAGG
TGGAGATGCACGGCGGGCCGCTGCTGGACGAGATCAACAAGTTCCTCAAG
GATAACGACATCGCCATCACCAAGGATTTCATCAAGGCGCACGGGGATGA
GGAGGGGGGCGAGGAGGCGGCGGCGGCCTGTCCAAGGTGGAGATGCACGG
CGGGCCGCTGCTGGACGAGATCAACAAGTTCCTCAAGGATAACGACATCG
CCATCACCAAGGATTTCATCAAGGCGCACGGGGATGAGGAGGGGGGCGAG
GAGGCGGCGGCGACGGGGCAGCATGCCTTCCAAGGTGGGGACGGCCTGGC
TGGGGCGGCTGAGGACCACGACCCTTGGGACGGGGCAGCATGCCTTCCAA
GGTGGGGACGGCCTGGCTGGGGCGGCTGAGGACCACGACCCTTGGGGACC
CCGGGGGGTCAGCCACGAGCCTCAGAGCGGGGGCGGGCTTGCATCCCCCG
CGGACAGCTTCTCTTCCAAGTTCTTCTCCCTAAGCCGGGGCGGCTCGGCC
TTGGCGGCCTGGGAGGACTCCGCCGGCGCCGGAAATAGCCGCGGAGACTA
CGCCGGGGGCGGGGACCCCGGGGGGTCAGCCACGAGCCTCAGAGCGGGGG
CGGGCTTGCATCCCCCGCGGACAGCTTCTCTTCCAAGTTCTTCTCCCTAA
GCCGGGGCGGCTCGGCCTTGGCGGCCTGGGAGGACTCCGCCGGCGCCGGA
AATAGCCGCGGAGACTACGCCGGGGGCGGG
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