mRNA_S-ischiensis_contig9.20535.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20535.1
Unique NamemRNA_S-ischiensis_contig9.20535.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20535.1 vs. uniprot
Match: A0A662XMR9_9STRA (IPPc domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMR9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.650e-6
Identity = 33/71 (46.48%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   28 WRKLLEHDELTQCLGQEVRRVFAGFREQRVAFPPSFRLKRGREGWCGDCTDPAI-LMGAYTTKIKEGHATR 237
            W  +L HDEL    G     +F GFRE ++AFPP+FR  RG+E      T PA  L   YTT + EGH TR
Sbjct:  715 WNDVLAHDELRS--GMANGSIFYGFREAKIAFPPTFRRVRGKELQLDAETWPAAELAECYTTAV-EGHGTR 782
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A662XMR9_9STRA4.650e-646.48IPPc domain-containing protein n=2 Tax=Nothophytop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1167647..1169674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20535.1prot_S-ischiensis_contig9.20535.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1167647..1169674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817383.997546-CDS-S-ischiensis_contig9:1167646..11677841622817383.997546-CDS-S-ischiensis_contig9:1167646..1167784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1167647..1167784 -
1695741072.632871-CDS-S-ischiensis_contig9:1167646..11677841695741072.632871-CDS-S-ischiensis_contig9:1167646..1167784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1167647..1167784 -
1622817384.0104182-CDS-S-ischiensis_contig9:1168164..11683201622817384.0104182-CDS-S-ischiensis_contig9:1168164..1168320Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1168165..1168320 -
1695741072.6426246-CDS-S-ischiensis_contig9:1168164..11683201695741072.6426246-CDS-S-ischiensis_contig9:1168164..1168320Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1168165..1168320 -
1622817384.0240145-CDS-S-ischiensis_contig9:1169611..11696741622817384.0240145-CDS-S-ischiensis_contig9:1169611..1169674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1169612..1169674 -
1695741072.6530733-CDS-S-ischiensis_contig9:1169611..11696741695741072.6530733-CDS-S-ischiensis_contig9:1169611..1169674Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1169612..1169674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20535.1

>prot_S-ischiensis_contig9.20535.1 ID=prot_S-ischiensis_contig9.20535.1|Name=mRNA_S-ischiensis_contig9.20535.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
GSRERAETAWRKLLEHDELTQCLGQEVRRVFAGFREQRVAFPPSFRLKRG
REGWCGDCTDPAILMGAYTTKIKEGHATRFLNASLPLMNPIMGRGFSMDA
AQQHPKPRNKPSGVDDGAG
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mRNA from alignment at S-ischiensis_contig9:1167647..1169674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20535.1 ID=mRNA_S-ischiensis_contig9.20535.1|Name=mRNA_S-ischiensis_contig9.20535.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2028bp|location=Sequence derived from alignment at S-ischiensis_contig9:1167647..1169674- (Schizocladia ischiensis KU_0333)
GGGAGCCGTGAGAGGGCGGAGACGGCGTGGCGGAAGCTGCTGGAACACGA
CGAGCTTACTCAGGTGCGTGTCCATGCCCTTGACTGTACACTGATGTGAT
ATGTACTTCGAAGTAGTACAGGAAATGTACAGCAGTACTTTCCTGTATGT
ACAGTCAGTCGACGTAGTCAAAAACACGTTTTTCCAGATAACAGGGGCAC
CCTCGCCGTCCATTTTCGACAGTATGGTGCTGAGGAGATGGGGTTGTGTT
GCCGTTGCCCTGGCTCATTCCACACTGATTTGCAGTGCGATCGGGGCAGC
AGTTCAGCCGTTGTCGACATCTAAAAATCCGAAAATCATTTTGTACCTAG
TTCGCTTGACTGTAGTTGGATACCGAATCACATCGAGTGTCCATGCCCGA
AACTGTACGCTGATGTGATGTGTGGTCTACTGTTTACCAAGTACAGCGGT
ACTTCGTGGAGGAAGCTTCTGGAACACGACGAGCTTGCTCAGGCGCGTGT
CCGTGTCCTTAGCCCTTTTCCCCCTGGGGTCCGTATCATCATAGGGGTTT
AGTGTGTAAGTCCAATTTAAGCAGGGGTAAAAGGGTTAACCGTACACTGA
CGTAATGTGTAGTCTACTACAGTAGGTACGAGTACGATTACAGCGGTACT
TTCCTGTTGTTCGACATCGAATCACACTGCACTGATTGGTGTCTCGTCGT
ATACGAGACGCTAGTGTGATGTGACGGGCAGTCGGGTTTCCTGTACTCTA
CACTGGTTGGGACAGACATCGCATCGCCTTGGGTCTGAGGTGACTCGGGG
GTGCGTACGGCTGGAAATCATCGCCCCCCACCCCACCCCACTCCCCTTTT
TTTGCCGGTATCCAAGCCTGCGAATGCTTGTGGTGATTCATATAAATTGT
GATGAGGTACAATCGCACGTGTGTGAGATTTGACTGTTGTCGTAATAGTA
GTCGTCCCATTTAAGAACTGAGTGTTCTTATCGTACTAGTGGTTATCACA
TCAAAATGCTTCTTGTACACGGACCCCCCTTCGTCAGAACGAGGCTGAAA
CGTGCCGTGAAACGCCGCTTGTGCCCCCGCCCCCTGCCCCTGGCGACAAC
AACGAAACCAAACAAACGCCACTACAAATACGGACTATCCTCCTCCCTGC
CCACCTTCCCCTCCTCCTTTTTCTCCCGTTCCCCGCACAAATCTCCCGTG
GCGAGCTAAGGAAGGGCCACTGCTGAGGTCTCTGTGACGTGGCCCGCACC
TCGTCCCGTGTTGTTCCTAGTAGTACTAATACGAGAACAGCCAATCTCAC
ACACGTTCGATTGTACCTCGTTACAAATTGTATGAATCGCTGCGGGAAAA
CCAGTGTCTGGGCCAGGAGGTGCGCCGCGTGTTTGCGGGTTTCCGCGAGC
AGCGGGTGGCGTTTCCGCCGAGCTTCCGCCTCAAGCGCGGGCGGGAGGGC
TGGTGCGGGGACTGCACCGACCCCGCCATCCTCATGGGGGCCTACACCAC
CAAGATCAAGGTGAGGTGCACTCTCATTCACCCATTTAGCCCTGGGGTCC
ATGTAGTGATAGAGTTTTAGTGTGTAAGTCCAATTAAGCAGGGGTAAAAG
GGCTAAGTAGCAATCATCGACTCTCCCTCCGCAGAGGGTGATTCATGTAA
ACTGTAACGAGGTGCAATCGCCCGTGTGTGAAATTTGAGTGTTCTTGTAC
TAGTGGTTATCCCATTTAAGAATGAGTGTTCTCACGACAATGCTCTCGCC
CAAAGAAGCGTCCTGGGGGGGAAGCATTGAGTATGTAGCCGGGAACACCC
GAGCCCTCAAAAGGACTTTGGCCCGCGACTATTTACCAGTAGGCAGCCGC
AAGAACTCCCCCCCCCCCCCCCCCCTTGCCCTGCCTCCAGGAGGGCCACG
CCACTCGCTTTCTGAACGCCTCCCTACCCCTCATGAACCCCATCATGGGC
CGAGGCTTCTCGATGGACGCCGCCCAACAGCACCCCAAGCCCCGCAACAA
ACCCAGCGGCGTTGATGATGGGGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1167647..1169674-

>mRNA_S-ischiensis_contig9.20535.1 ID=mRNA_S-ischiensis_contig9.20535.1|Name=mRNA_S-ischiensis_contig9.20535.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig9:1167647..1169674- (Schizocladia ischiensis KU_0333)
GGGAGCCGTGAGAGGGCGGAGACGGCGTGGCGGAAGCTGCTGGAACACGA
CGAGCTTACTCAGGGGAGCCGTGAGAGGGCGGAGACGGCGTGGCGGAAGC
TGCTGGAACACGACGAGCTTACTCAGTGTCTGGGCCAGGAGGTGCGCCGC
GTGTTTGCGGGTTTCCGCGAGCAGCGGGTGGCGTTTCCGCCGAGCTTCCG
CCTCAAGCGCGGGCGGGAGGGCTGGTGCGGGGACTGCACCGACCCCGCCA
TCCTCATGGGGGCCTACACCACCAAGATCAAGTGTCTGGGCCAGGAGGTG
CGCCGCGTGTTTGCGGGTTTCCGCGAGCAGCGGGTGGCGTTTCCGCCGAG
CTTCCGCCTCAAGCGCGGGCGGGAGGGCTGGTGCGGGGACTGCACCGACC
CCGCCATCCTCATGGGGGCCTACACCACCAAGATCAAGGAGGGCCACGCC
ACTCGCTTTCTGAACGCCTCCCTACCCCTCATGAACCCCATCATGGGCCG
AGGCTTCTCGATGGACGCCGCCCAACAGCACCCCAAGCCCCGCAACAAAC
CCAGCGGCGTTGATGATGGGGCGGGGGAGGGCCACGCCACTCGCTTTCTG
AACGCCTCCCTACCCCTCATGAACCCCATCATGGGCCGAGGCTTCTCGAT
GGACGCCGCCCAACAGCACCCCAAGCCCCGCAACAAACCCAGCGGCGTTG
ATGATGGGGCGGGG
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