mRNA_S-ischiensis_contig9.20485.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20485.1
Unique NamemRNA_S-ischiensis_contig9.20485.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:670751..673960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20485.1prot_S-ischiensis_contig9.20485.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 670751..673958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.6732404-CDS-S-ischiensis_contig9:670750..6708461622817379.6732404-CDS-S-ischiensis_contig9:670750..670846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 670751..670846 +
1695741068.9145021-CDS-S-ischiensis_contig9:670750..6708461695741068.9145021-CDS-S-ischiensis_contig9:670750..670846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 670751..670846 +
1622817379.6846173-CDS-S-ischiensis_contig9:672848..6730191622817379.6846173-CDS-S-ischiensis_contig9:672848..673019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 672849..673019 +
1695741068.925966-CDS-S-ischiensis_contig9:672848..6730191695741068.925966-CDS-S-ischiensis_contig9:672848..673019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 672849..673019 +
1622817379.6954195-CDS-S-ischiensis_contig9:673760..6739581622817379.6954195-CDS-S-ischiensis_contig9:673760..673958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 673761..673958 +
1695741068.9361522-CDS-S-ischiensis_contig9:673760..6739581695741068.9361522-CDS-S-ischiensis_contig9:673760..673958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 673761..673958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20485.1

>prot_S-ischiensis_contig9.20485.1 ID=prot_S-ischiensis_contig9.20485.1|Name=mRNA_S-ischiensis_contig9.20485.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
SWRELRRHLREAEQEGKALRGERAAMARRDRQCLAREKLLVELRARVGEL
SRREVDHESELVQSRLEGARGEAVAAHMEAEIARLRASEASLLEDRDCLV
QELAEERAKGRQLQADRRSYGRIRRFIEKHAGPGPRAAAPPAAASHPPAR
RRQQL
back to top

mRNA from alignment at S-ischiensis_contig9:670751..673960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20485.1 ID=mRNA_S-ischiensis_contig9.20485.1|Name=mRNA_S-ischiensis_contig9.20485.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3210bp|location=Sequence derived from alignment at S-ischiensis_contig9:670751..673960+ (Schizocladia ischiensis KU_0333)
TCGTGGCGGGAGTTGCGGAGGCATCTGAGGGAGGCGGAGCAGGAGGGGAA
GGCTCTGCGAGGGGAGAGAGCTGCCATGGCCCGACGGGATAGGCAGGTGC
GTGCGGGGGGGGTGGTGGGGGGGGAATTGTGGGATGTTCCGGATGTGCCT
TTTGGTCGGCCTAGGTCAAGCACTACGAGTACTCGGCCAATAGGACGCAT
GGCCAATGGCTTCGGCTGCAGCTGGCCAGCGATCCGCGAGAAGGAGCAGA
GACCAGGATCGTTCGGGTCCAGGGCATGCGCAAAGATGAGAAACCTCGTC
TGAACGTGGGTACACACACTCAGGCCACTGTTTGAGGGCTTTAGTGGCGT
GGTTTGATGTGATGTGGTGTGATGTCAAACGATGTACTGGTACTGAACGT
TAGAGGACAAACCACGTCACATCACATCACAGCGTTGCCGCTGTTGAGGT
CTTAGTGACATGGCCTGCACCTCGCCCTGTGTTCTTACTGTTGGTACTAC
GAGCCTGCTCCGTCTCGAACGAGGCGCGGGGTCAATGGTCTCGGGACTAC
GGCAAGCACCACGTGAGTACATATACTACTGTACTCGAGTAGATACTGCT
GCTGTGTGTGCACAGAGCACGCGTCGGACAGGGTTGTTATCGCATGCCAT
CCTGTGCATGCCTTCCAAGTACCAAGTGTGTGTATCTGTCACTCGCGTCG
GACAGGGTTGTTATCGCATGCCATCCTGTGCATGCCGCCGATCGTCGTCG
TCGGCCCGGTGCGCTACATGCTGGACCGCCGGCCAGCCCCCAGCCCCATG
CATCGCATGTGGGTTGATTCCCTCTACATGCCCCACTGCAGTTGTGACAT
CGCATCACATTAACTCTCAGCGTGAGGTCAAGAAATCGATGGTTTGTCGG
CCGAGGGCTGAACATTGGACAGGTCAGGTGCCACACCGATAACTTACCAC
AGTCGTCGGAGAGATTTTGCCCCCATGGGACAATTTTCGGGGGAATATTT
CTAGCCGGGAAGGTACCTAAATTGTCCCGAAAACTCTCAGAAACGTTCCC
CCAGGTCCTGAGGGAGATTTTCCGAGTTTTCCTGCGCGAATCCGACCAGT
ATTCGGCGAGAAAAGTTCTCCCGAAAATTGGCATGGGGGGGGAAGATCTC
TCCGATGATTACGGTACGCTATGCCTAAGTTATGCCGATCGGCATCCCCT
GGGGGTGTCCAGGCCACCCGTTCTCTTCCGGGGGGCTGTGAAACGGCTGG
TAAGTTAAAGTTGAAAGTTGAAAGTTTAGTAGTAGCACAGTGAAACGCTG
GTAAGTTAGCCGGTCTCCCCCAATGACAGCCGCTTCCTTGACGGTTACAA
AAGCAAGATTTTCTGTGTTGGCAGTTTACGCCGCGCAGTTTATTGCTGCC
CCGGGGGCGTCCGTGAAACGCTCGCCCCTCTTTGCACTACTAGTAGGTAA
CCTGTCCTCCTGTGAAACCGCTTTCCACTTTAATACGATAGCACTCAATT
CCTAAATTGGATAACCACCAATACGAGAACACTCAATCTCACACACGTGT
GCTTGTACCTCTCTACAATTTTGTTAATTATTGTGATGGCATGCGAGCTC
CGGGCCCCGCCCCAACAACCTAAGGTGGGGACCTCACCAGAAGCCCTTCT
TTTCGCCCGCAGGGCACAAAAATCAAGAAAAGAAACCAAAAAGATGGGCA
AGGCATGGGCAATACAGGGGGTCTCTCTCGTGTCGCGTTGTGGAACGTAC
CTGTTTACATGAATCACCGCTTTCCGCTTTTCACTCCCCCTCGTTACAGT
GCCTCTTTGCGCTAAGTAGGTAACCTATCCTCCTGCGAAACCGCTTTCTG
CTTTCCGCTCCCACCCCCCCTCATTCCAGCCCCTCTTTGAAATGGGTAAC
CTATCCTCCTGTGAAACCGCTTTCCACTTCCTGCTCTCCCCCCCTCGTTG
CAGTGCCTCGCCCGTGAGAAGCTGCTGGTGGAGTTGAGGGCAAGGGTAGG
CGAGCTCTCCCGCCTCGCGAAACGCTCGCCCCTCTTCGAACTAGGTAACC
TACGTCGTATCCTCCTGCGCACCGCTTTCCGCTTCCCCCTCATGACAGTG
CCTCGCCCGCGAGAAGCTGCTGGTGGAGCTCAGGGCAAGGGTAGGCGAGC
TATCCCGCCGCGAGGTTGACCACGAGTCTGAGCTTGTGCAGAGCCGGCTG
GAGGGAGCCAGGGGGGAGGCCGTCGCCGCGCACATGGAGGCTGAGATCGC
GCGGCTAAGGGCCAGCGAGGTGCAGTGATGGAATATGGATCAGTAGATGG
CTATCGGGCTCGACTGGTTTTGTGGGTGGCGTTGCTAACTACAGTACTTG
GATTTAGTGTGGGTCAAACTATCGAATATCGACTATCGATAGATATATAG
ATGAACTTTATATTACGTATATTTTCTTTTCTTTTTGCCCTGCGAGGGGA
AGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAACCTTTTGGCACGGGGC
CTGGAACTCGCCGCTTATCGAACACTCAAAATAGATCTCTTCCTTGTCAA
AGGGTTCGGCCCTGAAGTACGTACGAGCCTTAATAACCAACTACTTAGAT
GCAGTAGGCTACTCTGTACTGTGCTGTCAATGGTCCCGGCGCTCTGTACT
GTAGTGTACTGTAGTGTACTTCGAAGTACTGTACAGTTTGAGACAGGGGT
CGTGTGCGTATGCGCGGCCTGCCGCACAGTTGCTACTTGCCACTGTGCTC
GTAGAGCTCTACCCGTGGTATATTCCGTGTGGGCAAAGGCGTGCAGGCCG
GGCCACTGCCTGGAGAGCGTTATCGCGGGGATACAGCAAGCAAACATGTG
AGTGCACACGCGCGCGCACACACACACACACACACACAACACACACGAAC
ACACACACACACGTGGCCGTTGTCAACGTCAAACCGCTATCGTATCCTAG
CGACGCCCAGCCAACGTGATCACCACCAACCCCCGCTCCCGCCCCCGCCT
CCCTTGGAAGGCGTCTCTCCTGGAGGACCGGGACTGTCTGGTGCAGGAGC
TCGCCGAGGAGCGCGCCAAGGGGCGGCAGCTGCAGGCCGACCGCCGCTCA
TACGGGCGTATCCGTCGCTTCATCGAGAAGCACGCTGGGCCAGGCCCGCG
AGCCGCAGCCCCGCCTGCCGCCGCCTCCCATCCTCCTGCTCGGCGGCGGC
AGCAGCTGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:670751..673960+

>mRNA_S-ischiensis_contig9.20485.1 ID=mRNA_S-ischiensis_contig9.20485.1|Name=mRNA_S-ischiensis_contig9.20485.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig9:670751..673960+ (Schizocladia ischiensis KU_0333)
TCGTGGCGGGAGTTGCGGAGGCATCTGAGGGAGGCGGAGCAGGAGGGGAA
GGCTCTGCGAGGGGAGAGAGCTGCCATGGCCCGACGGGATAGGCAGTCGT
GGCGGGAGTTGCGGAGGCATCTGAGGGAGGCGGAGCAGGAGGGGAAGGCT
CTGCGAGGGGAGAGAGCTGCCATGGCCCGACGGGATAGGCAGTGCCTCGC
CCGCGAGAAGCTGCTGGTGGAGCTCAGGGCAAGGGTAGGCGAGCTATCCC
GCCGCGAGGTTGACCACGAGTCTGAGCTTGTGCAGAGCCGGCTGGAGGGA
GCCAGGGGGGAGGCCGTCGCCGCGCACATGGAGGCTGAGATCGCGCGGCT
AAGGGCCAGCGAGTGCCTCGCCCGCGAGAAGCTGCTGGTGGAGCTCAGGG
CAAGGGTAGGCGAGCTATCCCGCCGCGAGGTTGACCACGAGTCTGAGCTT
GTGCAGAGCCGGCTGGAGGGAGCCAGGGGGGAGGCCGTCGCCGCGCACAT
GGAGGCTGAGATCGCGCGGCTAAGGGCCAGCGAGGCGTCTCTCCTGGAGG
ACCGGGACTGTCTGGTGCAGGAGCTCGCCGAGGAGCGCGCCAAGGGGCGG
CAGCTGCAGGCCGACCGCCGCTCATACGGGCGTATCCGTCGCTTCATCGA
GAAGCACGCTGGGCCAGGCCCGCGAGCCGCAGCCCCGCCTGCCGCCGCCT
CCCATCCTCCTGCTCGGCGGCGGCAGCAGCTGGCGTCTCTCCTGGAGGAC
CGGGACTGTCTGGTGCAGGAGCTCGCCGAGGAGCGCGCCAAGGGGCGGCA
GCTGCAGGCCGACCGCCGCTCATACGGGCGTATCCGTCGCTTCATCGAGA
AGCACGCTGGGCCAGGCCCGCGAGCCGCAGCCCCGCCTGCCGCCGCCTCC
CATCCTCCTGCTCGGCGGCGGCAGCAGCTG
back to top