mRNA_S-ischiensis_contig9.20415.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20415.1
Unique NamemRNA_S-ischiensis_contig9.20415.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: D7FUR6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 4.310e-43
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 MMSSTSCESLSD----GESLKPVPQEEEAWLAPDRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            M S TSCESL D    G S +P+     A  AP+R  I+GSGNWGSAIARI+G NV+E EGFEHQ+RQWVFPE V  +G    L +VIN+ HENVKYLPGVKLP+N++A+ DLA AV+ ATIL+FV+PHQ
Sbjct:   19 MGSMTSCESLLDADLGGASRQPLGGGGGA--APERVAIVGSGNWGSAIARIVGRNVIEQEGFEHQIRQWVFPEKVSHNGVEACLTEVINKEHENVKYLPGVKLPENLVAEGDLALAVKDATILIFVLPHQ 146          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.660e-43
Identity = 79/129 (61.24%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 MMSSTSCESLSDGESLKPVPQEE---EAWLAPDRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            M S TSCESL D + L   P++        AP+R  I+GSGNWGSAIARI+G NV+E EGFEHQ+RQWVFPE V  +G    L +VIN  HENVKYLPGVKLP+N++A+ DLA AV+ ATIL+FV+PHQ
Sbjct:    3 MGSMTSCESLLDAD-LGGAPRQVLGGGGGAAPERVAIVGSGNWGSAIARIVGRNVIEQEGFEHQIRQWVFPEKVSHNGVEACLTEVINREHENVKYLPGVKLPENLVAEGDLALAVKDATILIFVLPHQ 130          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A8H7PQ84_MORIS (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PQ84_MORIS)

HSP 1 Score: 131 bits (329), Expect = 4.510e-34
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   79 LAPDRCTIIGSGNWGSAIARIIGHNVVEHEG-FEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQASQTS 393
            +AP + +IIGSGNWGSAIA+I+GHN  +H   FE +VR WVF E  +VDG  ++L D+INE+HENVKYLPG +LPDN++A PDL  A +GA +L+FV+PHQ S  S
Sbjct:    1 MAPHKVSIIGSGNWGSAIAKIVGHNARQHSDMFEEEVRMWVFEE--QVDG--KNLTDIINEKHENVKYLPGTQLPDNVVAIPDLTKACEGADLLIFVLPHQVSVLS 102          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A7S0EXZ6_9EUKA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXZ6_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 6.020e-34
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            ++  IIGSGNWGSAIA+I+G NV++ + FE +V  WVF ENV  DG  ++L D+IN  HENVKYLPGVK  DN++ADPDL +AVQGAT+L+FV+PHQ
Sbjct:   31 EKVCIIGSGNWGSAIAKIVGRNVLDRDQFEDEVTMWVFQENV--DG--KNLTDIINNEHENVKYLPGVKFTDNVVADPDLTNAVQGATLLIFVLPHQ 123          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A7S0EYM2_9EUKA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EYM2_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 7.590e-34
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            ++  IIGSGNWGSAIA+I+G NV++ + FE +V  WVF ENV  DG  ++L D+IN  HENVKYLPGVK  DN++ADPDL +AVQGAT+L+FV+PHQ
Sbjct:   31 EKVCIIGSGNWGSAIAKIVGRNVLDRDQFEDEVTMWVFQENV--DG--KNLTDIINNEHENVKYLPGVKFTDNVVADPDLTNAVQGATLLIFVLPHQ 123          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A8J9SPK1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SPK1_PHATR)

HSP 1 Score: 120 bits (302), Expect = 1.240e-32
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEV-DGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            D+  IIGSGNWGSAIA ++G N      FE QV  WVF E VE+ DG  + L ++IN RHENVKYLPG+ LP NI+A PDLA A + AT+L+FV+PHQ
Sbjct:   13 DKVCIIGSGNWGSAIATLVGRNCERLPFFESQVNMWVFEEMVELEDGSQKKLTEIINSRHENVKYLPGIPLPSNIVATPDLAEACRDATLLIFVLPHQ 110          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A7S2HPY0_9EUKA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HPY0_9EUKA)

HSP 1 Score: 126 bits (316), Expect = 2.490e-32
Identity = 57/97 (58.76%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            ++ TI+GSGNWGSAIA+I+G NV++ + FE +V+ WVF E  +VDG  ++L D+IN  HENVKYLP +K  +N++ADPDLASAV G+T+L+FV+PHQ
Sbjct:   31 EKVTIVGSGNWGSAIAKIVGRNVLDRDEFEDEVKMWVFQE--QVDG--KNLTDIINTEHENVKYLPDIKFTENVVADPDLASAVAGSTLLIFVLPHQ 123          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A8J6C6F7_DIALT (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6F7_DIALT)

HSP 1 Score: 125 bits (315), Expect = 2.620e-32
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            ++  IIGSGNWGSAIARIIG N   H+  E  V  WVF E  ++DG  ++L ++INE HENVKYL GVKLP N++A+PDLA AV GAT+LVFVMPHQ
Sbjct:    5 EKIAIIGSGNWGSAIARIIGFNAARHDSIETDVHMWVFEE--QIDG--KNLSEIINETHENVKYLKGVKLPTNVIAEPDLAKAVTGATLLVFVMPHQ 97          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A7R9YP25_DIALT (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YP25_DIALT)

HSP 1 Score: 125 bits (315), Expect = 3.670e-32
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   88 DRCTIIGSGNWGSAIARIIGHNVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            ++  IIGSGNWGSAIARIIG N   H+  E  V  WVF E  ++DG  ++L ++INE HENVKYL GVKLP N++A+PDLA AV GAT+LVFVMPHQ
Sbjct:   28 EKIAIIGSGNWGSAIARIIGFNAARHDSIETDVHMWVFEE--QIDG--KNLSEIINETHENVKYLKGVKLPTNVIAEPDLAKAVTGATLLVFVMPHQ 120          
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Match: A0A8H7Q997_9FUNG (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q997_9FUNG)

HSP 1 Score: 125 bits (313), Expect = 5.160e-32
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   91 RCTIIGSGNWGSAIARIIGHNVVEHEG-FEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLPDNIMADPDLASAVQGATILVFVMPHQ 378
            +  IIGSGNWGSAIA+I+G N  +H   F+ QVR WVF E  +VDG  R+L D+INE+HENVKYLPGVKLP+N++A PDL  A QGA +LVFV+PHQ
Sbjct:    5 KVAIIGSGNWGSAIAKIVGENAQKHSDLFDRQVRMWVFEE--QVDG--RNLTDIINEKHENVKYLPGVKLPENVIAIPDLIEACQGADLLVFVLPHQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR6_ECTSI4.310e-4362.31Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A6H5JZY6_9PHAE8.660e-4361.24Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A8H7PQ84_MORIS4.510e-3459.43Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S0EXZ6_9EUKA6.020e-3462.89Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S0EYM2_9EUKA7.590e-3462.89Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A8J9SPK1_PHATR1.240e-3259.18Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S2HPY0_9EUKA2.490e-3258.76Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A8J6C6F7_DIALT2.620e-3262.89Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7R9YP25_DIALT3.670e-3262.89Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A8H7Q997_9FUNG5.160e-3263.92Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:299011..300423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog55529.EKX38553
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
EggNOG free text desc.glycerol-3-phosphate catabolic process
EggNOG OGsCOG0240@1,KOG2711@2759
EC1.1.1.8
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglycerol-3-phosphate dehydrogenase
Ec32 orthologEc-19_004200.1
Exons3
Model size399
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20415.1prot_S-ischiensis_contig9.20415.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 299011..300423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.6338034-CDS-S-ischiensis_contig9:299010..2991781622817376.6338034-CDS-S-ischiensis_contig9:299010..299178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 299011..299178 +
1695741066.6494544-CDS-S-ischiensis_contig9:299010..2991781695741066.6494544-CDS-S-ischiensis_contig9:299010..299178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 299011..299178 +
1622817376.6462817-CDS-S-ischiensis_contig9:299847..2999151622817376.6462817-CDS-S-ischiensis_contig9:299847..299915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 299848..299915 +
1695741066.6631355-CDS-S-ischiensis_contig9:299847..2999151695741066.6631355-CDS-S-ischiensis_contig9:299847..299915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 299848..299915 +
1622817376.6611843-CDS-S-ischiensis_contig9:300260..3004231622817376.6611843-CDS-S-ischiensis_contig9:300260..300423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 300261..300423 +
1695741066.6742117-CDS-S-ischiensis_contig9:300260..3004231695741066.6742117-CDS-S-ischiensis_contig9:300260..300423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 300261..300423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20415.1

>prot_S-ischiensis_contig9.20415.1 ID=prot_S-ischiensis_contig9.20415.1|Name=mRNA_S-ischiensis_contig9.20415.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
MMSSTSCESLSDGESLKPVPQEEEAWLAPDRCTIIGSGNWGSAIARIIGH
NVVEHEGFEHQVRQWVFPENVEVDGETRSLPDVINERHENVKYLPGVKLP
DNIMADPDLASAVQGATILVFVMPHQASQTSA*
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mRNA from alignment at S-ischiensis_contig9:299011..300423+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20415.1 ID=mRNA_S-ischiensis_contig9.20415.1|Name=mRNA_S-ischiensis_contig9.20415.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1413bp|location=Sequence derived from alignment at S-ischiensis_contig9:299011..300423+ (Schizocladia ischiensis KU_0333)
ATGATGTCTAGTACCTCCTGCGAGTCGCTCTCTGACGGCGAGTCCCTCAA GCCTGTGCCGCAGGAGGAGGAGGCCTGGTTGGCGCCGGACCGTTGCACCA TCATTGGGTCCGGCAACTGGGGATCCGCGATTGCCCGCATCATCGGACAC AATGTGGTCGAACACGAGGTCAGGGATCCCTGCAGACAATGTTGAGCACT CGCCATACAATGTAGTCCAAACTGAGGTTCTTCGTTGAAATTTTGCTGAT GCACACCTGATTGCACATCATTGCCCGCGTTGTCAGCCAGAGCGTTCCGG CAACCCTCCGCCGGCTGCCAACCTGTTCCCCCATCAATGCAAGAGCGTGC TCTTCTGCACAAGCATCGTATGGTGTTTCTATCGTGGTCGCTTGGGACTG GCATGTGATCCAAGGTGCTCCTCTCTTGGAGGGCAATGTTTGTGCACTCA GGGACTGACCAGCACGCAAGTTGGCCTCCCGTAAACCCCATCTCGCTCCA GCCCACCCTACATACCTAGGGCCCTATACTTCCAAGTGCAGTAGTATGCA TGTACACGCGGGCAAGTGACTATTCGGAGCTCCGTACGGAGGGTTGGCGG TTGCTGGACGGTTCATAGGTGCGTCATTGGGTCTTGGGGCATTGGCACAC GCGCACATGTGCCATATACTTGCGTACTACCAAGTATACTGATTTGGAAT GCACTGAGGAGTTCGATCTGCCACATCTCTAGTTGCGCCCCTGGATGTTC CCGGAGGTGTTTGCAGCCAAAGTCGAGCCTCACAGGCTGCCTCTTACCCA GCCCCATCCCGGCGATGCATTTGTAACTGCCATGCAGGGCTTTGAGCACC AAGTGCGGCAATGGGTCTTCCCGGAAAACGTTGAGGTGGACGGCGAGACG CGCAGGTGTGTGCGTGTGTGTGCGTGTGTTTGTGTTTGCGTGTGGTACAT CTCTCTGCGTGTTTCTCTGTATCTCTGCCCCTGTCTCTCTCTATACGAGG TACTTCGTGTTTGTGTTTGTGTATATGGTTTATCTGTCTGTGTTTCTGTC TCTCTCTCTATCTCTGTTTTACAGTATGTAGATGACATGTGCTCACAACA GTGCCAGCGACATTCTTGGATCGACAGCCTGCCGGACGTGATCACTCAAT CTCACACACGTGCTATTGTACCTCGCTACAATTTATATGACTTACCTTGA TGCTCGTACATGTGCTCACAATAGTGCCCGCGACACTCTCGGATCCACAG CCTGCCGGACGTGATCAACGAGCGACACGAGAACGTCAAGTACCTCCCGG GAGTCAAGCTGCCCGACAACATCATGGCCGACCCTGACCTGGCCTCGGCC GTACAGGGCGCCACCATCCTGGTGTTTGTCATGCCCCACCAGGCAAGTCA AACAAGCGCTTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:299011..300423+

>mRNA_S-ischiensis_contig9.20415.1 ID=mRNA_S-ischiensis_contig9.20415.1|Name=mRNA_S-ischiensis_contig9.20415.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig9:299011..300423+ (Schizocladia ischiensis KU_0333)
ATGATGTCTAGTACCTCCTGCGAGTCGCTCTCTGACGGCGAGTCCCTCAA
GCCTGTGCCGCAGGAGGAGGAGGCCTGGTTGGCGCCGGACCGTTGCACCA
TCATTGGGTCCGGCAACTGGGGATCCGCGATTGCCCGCATCATCGGACAC
AATGTGGTCGAACACGAGATGATGTCTAGTACCTCCTGCGAGTCGCTCTC
TGACGGCGAGTCCCTCAAGCCTGTGCCGCAGGAGGAGGAGGCCTGGTTGG
CGCCGGACCGTTGCACCATCATTGGGTCCGGCAACTGGGGATCCGCGATT
GCCCGCATCATCGGACACAATGTGGTCGAACACGAGGGCTTTGAGCACCA
AGTGCGGCAATGGGTCTTCCCGGAAAACGTTGAGGTGGACGGCGAGACGC
GCAGGGCTTTGAGCACCAAGTGCGGCAATGGGTCTTCCCGGAAAACGTTG
AGGTGGACGGCGAGACGCGCAGCCTGCCGGACGTGATCAACGAGCGACAC
GAGAACGTCAAGTACCTCCCGGGAGTCAAGCTGCCCGACAACATCATGGC
CGACCCTGACCTGGCCTCGGCCGTACAGGGCGCCACCATCCTGGTGTTTG
TCATGCCCCACCAGGCAAGTCAAACAAGCGCTTAACCTGCCGGACGTGAT
CAACGAGCGACACGAGAACGTCAAGTACCTCCCGGGAGTCAAGCTGCCCG
ACAACATCATGGCCGACCCTGACCTGGCCTCGGCCGTACAGGGCGCCACC
ATCCTGGTGTTTGTCATGCCCCACCAGGCAAGTCAAACAAGCGCTTAA
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