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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1216 |
| Cds size | 669 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817373.8239992-UTR-S-ischiensis_contig9:3520965..3521507 | 1622817373.8239992-UTR-S-ischiensis_contig9:3520965..3521507 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3520966..3521507 + |
| 1695741064.5400286-UTR-S-ischiensis_contig9:3520965..3521507 | 1695741064.5400286-UTR-S-ischiensis_contig9:3520965..3521507 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3520966..3521507 + |
| 1622817373.8505404-UTR-S-ischiensis_contig9:3522176..3522181 | 1622817373.8505404-UTR-S-ischiensis_contig9:3522176..3522181 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3522177..3522181 + |
| 1695741064.5623147-UTR-S-ischiensis_contig9:3522176..3522181 | 1695741064.5623147-UTR-S-ischiensis_contig9:3522176..3522181 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 3522177..3522181 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817373.8369403-CDS-S-ischiensis_contig9:3521507..3522176 | 1622817373.8369403-CDS-S-ischiensis_contig9:3521507..3522176 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3521508..3522176 + |
| 1695741064.5521438-CDS-S-ischiensis_contig9:3521507..3522176 | 1695741064.5521438-CDS-S-ischiensis_contig9:3521507..3522176 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 3521508..3522176 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20821.1 >prot_S-ischiensis_contig9.20821.1 ID=prot_S-ischiensis_contig9.20821.1|Name=mRNA_S-ischiensis_contig9.20821.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=223bp
MHHSGRAPGGSPLQAISHLRVSVYQAGVWRLHASLGASKLAPPSRLSYSS
TPSTTRTGTPGHYCTSTCRHSSTKHTHHTTYLEALLGTCLRMDAHATGEV
PRLTKTVWLLRPKVPQSGPARQDAYSYTTIYCTSQYYSNAVQVHNPARPW
APATAKARAPHQEMHAWVYAAHGLWAACGMYARSYTVRSPARTLGAGPGG
GAPSSELAAATRQAIATVVQHQ* back to topmRNA from alignment at S-ischiensis_contig9:3520966..3522181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20821.1 ID=mRNA_S-ischiensis_contig9.20821.1|Name=mRNA_S-ischiensis_contig9.20821.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1216bp|location=Sequence derived from alignment at S-ischiensis_contig9:3520966..3522181+ (Schizocladia ischiensis KU_0333)
GCCACAAGTTCGCGCCAGTGTTTTCTTTCACCAACAAACCCGTTCAATGT
CACGGGTCACGGGTGATCAGTGGCATTCGCTGCGACCGTAAATGGGCAGG
CCGGGGGGTCCGAGTCTGCTGCAAGTGTCACTGATTGGTCCAATAGCTGG
CCAGCCAACGAAACTGTCGGGGGGGCCTGAGGCTCTCCCCGTTCCCAAGT
ACTCGAGTATCTATGGCAACTGCTCTAACAGCAACAGTACGAGGGACCTC
GAGGTGCGCTGGCGCTCAGGCTTGGATGTTTTCGACAAGACAAACAAGCG
AGTTGAAAAAGGGTCCCCACTTGTACGACTAAACTCAGTAGAGTACGCGA
GTTCAGGGCCGCCTCCCTCGGACGCCAAAGCTTCCTTTCACTTGCAGGGC
ATGTATACAGAGCAGAAAAACAGGCTCACAATCGTTGTGGGATTGTCTGC
GATTTGGAACTCTATTTGTGCGCTGCTGTCCCGACACACCCCCCTGTGGC
AGCCGGAGTGAATTAATGCCCCACTGTCGCGCTGGGGCATGAATGCATCA
TTCCGGCCGCGCCCCGGGTGGGTCACCACTGCAAGCGATAAGCCACCTAC
GAGTAAGCGTGTATCAAGCGGGCGTGTGGCGGCTGCACGCTAGTCTAGGT
GCATCAAAGCTTGCGCCACCTTCACGCCTGTCCTACAGTAGTACACCAAG
CACCACCCGCACTGGCACGCCCGGGCACTACTGTACTAGTACCTGTAGAC
ACAGCAGCACCAAGCACACACACCACACAACTTACTTGGAAGCACTCCTT
GGCACTTGCCTGCGGATGGACGCGCACGCCACAGGGGAGGTGCCTCGCCT
CACCAAGACGGTCTGGCTGCTACGGCCAAAAGTGCCGCAGTCCGGTCCTG
CCCGTCAAGATGCGTACTCGTACACTACAATCTATTGTACTTCACAATAC
TACAGTAATGCGGTCCAGGTACACAACCCTGCCCGCCCATGGGCACCGGC
CACAGCCAAAGCACGCGCCCCCCATCAAGAGATGCACGCATGGGTGTACG
CTGCTCATGGCCTGTGGGCGGCTTGTGGCATGTACGCACGTTCATACACA
GTGCGCTCCCCTGCACGCACGCTGGGGGCGGGGCCGGGGGGGGGTGCACC
CTCCTCAGAGCTGGCGGCAGCAACGCGACAAGCCATCGCAACTGTTGTGC
AACACCAATAGAGCCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:3520966..3522181+ >mRNA_S-ischiensis_contig9.20821.1 ID=mRNA_S-ischiensis_contig9.20821.1|Name=mRNA_S-ischiensis_contig9.20821.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1338bp|location=Sequence derived from alignment at S-ischiensis_contig9:3520966..3522181+ (Schizocladia ischiensis KU_0333)
ATGCATCATTCCGGCCGCGCCCCGGGTGGGTCACCACTGCAAGCGATAAG
CCACCTACGAGTAAGCGTGTATCAAGCGGGCGTGTGGCGGCTGCACGCTA
GTCTAGGTGCATCAAAGCTTGCGCCACCTTCACGCCTGTCCTACAGTAGT
ACACCAAGCACCACCCGCACTGGCACGCCCGGGCACTACTGTACTAGTAC
CTGTAGACACAGCAGCACCAAGCACACACACCACACAACTTACTTGGAAG
CACTCCTTGGCACTTGCCTGCGGATGGACGCGCACGCCACAGGGGAGGTG
CCTCGCCTCACCAAGACGGTCTGGCTGCTACGGCCAAAAGTGCCGCAGTC
CGGTCCTGCCCGTCAAGATGCGTACTCGTACACTACAATCTATTGTACTT
CACAATACTACAGTAATGCGGTCCAGGTACACAACCCTGCCCGCCCATGG
GCACCGGCCACAGCCAAAGCACGCGCCCCCCATCAAGAGATGCACGCATG
GGTGTACGCTGCTCATGGCCTGTGGGCGGCTTGTGGCATGTACGCACGTT
CATACACAGTGCGCTCCCCTGCACGCACGCTGGGGGCGGGGCCGGGGGGG
GGTGCACCCTCCTCAGAGCTGGCGGCAGCAACGCGACAAGCCATCGCAAC
TGTTGTGCAACACCAATAGATGCATCATTCCGGCCGCGCCCCGGGTGGGT
CACCACTGCAAGCGATAAGCCACCTACGAGTAAGCGTGTATCAAGCGGGC
GTGTGGCGGCTGCACGCTAGTCTAGGTGCATCAAAGCTTGCGCCACCTTC
ACGCCTGTCCTACAGTAGTACACCAAGCACCACCCGCACTGGCACGCCCG
GGCACTACTGTACTAGTACCTGTAGACACAGCAGCACCAAGCACACACAC
CACACAACTTACTTGGAAGCACTCCTTGGCACTTGCCTGCGGATGGACGC
GCACGCCACAGGGGAGGTGCCTCGCCTCACCAAGACGGTCTGGCTGCTAC
GGCCAAAAGTGCCGCAGTCCGGTCCTGCCCGTCAAGATGCGTACTCGTAC
ACTACAATCTATTGTACTTCACAATACTACAGTAATGCGGTCCAGGTACA
CAACCCTGCCCGCCCATGGGCACCGGCCACAGCCAAAGCACGCGCCCCCC
ATCAAGAGATGCACGCATGGGTGTACGCTGCTCATGGCCTGTGGGCGGCT
TGTGGCATGTACGCACGTTCATACACAGTGCGCTCCCCTGCACGCACGCT
GGGGGCGGGGCCGGGGGGGGGTGCACCCTCCTCAGAGCTGGCGGCAGCAA
CGCGACAAGCCATCGCAACTGTTGTGCAACACCAATAG back to top
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