mRNA_S-ischiensis_contig9.20667.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20667.1
Unique NamemRNA_S-ischiensis_contig9.20667.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2436996..2437748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size755
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.7575161-UTR-S-ischiensis_contig9:2436995..24373341622817372.7575161-UTR-S-ischiensis_contig9:2436995..2437334Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2436996..2437334 +
1695741064.014968-UTR-S-ischiensis_contig9:2436995..24373341695741064.014968-UTR-S-ischiensis_contig9:2436995..2437334Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2436996..2437334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.7734096-CDS-S-ischiensis_contig9:2437334..24377481622817372.7734096-CDS-S-ischiensis_contig9:2437334..2437748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2437335..2437748 +
1695741064.0252876-CDS-S-ischiensis_contig9:2437334..24377481695741064.0252876-CDS-S-ischiensis_contig9:2437334..2437748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2437335..2437748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20667.1prot_S-ischiensis_contig9.20667.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2437335..2437748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20667.1

>prot_S-ischiensis_contig9.20667.1 ID=prot_S-ischiensis_contig9.20667.1|Name=mRNA_S-ischiensis_contig9.20667.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
MTNPSSSTLVRYSTSGFTRHSSRGSPCAGRGPGPHATHSGPGRESVSEFA
SLSPMGNLKSLGRAVDAFHAHARTRTRTPSAPMETPGRGTGTLVTRVPRD
DRVLYTTSSIYIVYILSDHQKSSLKPPKWRRDLITGCW
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mRNA from alignment at S-ischiensis_contig9:2436996..2437748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20667.1 ID=mRNA_S-ischiensis_contig9.20667.1|Name=mRNA_S-ischiensis_contig9.20667.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=753bp|location=Sequence derived from alignment at S-ischiensis_contig9:2436996..2437748+ (Schizocladia ischiensis KU_0333)
CCAGCTTCCACACAAGTTTCATGATCGCTCTGTGCTGGAGAAAAATAAGA
AGTATGCGTTGTGCTTTAAATCGTGGGGCATGCAGGGCCGCCAGGGAGGC
ACATCAACGGTTCAAGTCCGTCATATACTTCGAAGCATCCAGTCAAGAAC
TCGGGAAGCGGGCGCGGGCAAGCACGCAGCAGACTCAAAGCCGATTTTCA
ATTGGGCCTCGACAATGGCACACGCCAGACATACTGAACAGTACAGAAGC
GCTGCACCATTTACAGTACTCGAGTGCACCACACGTACACGACTTCCCAG
GGTGAGTCCCGGCCCGCTCTCAGCGGCCACAGTACCAATATGACCAACCC
TTCAAGCTCTACTCTTGTTCGATACAGCACTTCCGGATTTACTCGACACA
GTAGCAGGGGAAGTCCCTGCGCCGGACGCGGCCCCGGTCCCCACGCCACC
CACTCAGGCCCCGGCCGCGAGTCGGTGTCTGAGTTCGCGTCGCTCTCCCC
CATGGGAAACTTGAAGAGTTTGGGCCGAGCCGTGGACGCCTTCCACGCGC
ACGCACGCACACGCACACGCACGCCCTCGGCACCGATGGAAACCCCGGGC
CGTGGCACTGGCACACTCGTGACACGAGTTCCGCGAGATGACCGAGTGCT
ATATACTACTAGTAGTATATATATCGTGTATATACTCTCCGACCATCAGA
AAAGTTCACTCAAGCCCCCGAAATGGAGGCGTGACCTGATCACCGGCTGC
TGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2436996..2437748+

>mRNA_S-ischiensis_contig9.20667.1 ID=mRNA_S-ischiensis_contig9.20667.1|Name=mRNA_S-ischiensis_contig9.20667.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig9:2436996..2437748+ (Schizocladia ischiensis KU_0333)
ATGACCAACCCTTCAAGCTCTACTCTTGTTCGATACAGCACTTCCGGATT
TACTCGACACAGTAGCAGGGGAAGTCCCTGCGCCGGACGCGGCCCCGGTC
CCCACGCCACCCACTCAGGCCCCGGCCGCGAGTCGGTGTCTGAGTTCGCG
TCGCTCTCCCCCATGGGAAACTTGAAGAGTTTGGGCCGAGCCGTGGACGC
CTTCCACGCGCACGCACGCACACGCACACGCACGCCCTCGGCACCGATGG
AAACCCCGGGCCGTGGCACTGGCACACTCGTGACACGAGTTCCGCGAGAT
GACCGAGTGCTATATACTACTAGTAGTATATATATCGTGTATATACTCTC
CGACCATCAGAAAAGTTCACTCAAGCCCCCGAAATGGAGGCGTGACCTGA
TCACCGGCTGCTGGATGACCAACCCTTCAAGCTCTACTCTTGTTCGATAC
AGCACTTCCGGATTTACTCGACACAGTAGCAGGGGAAGTCCCTGCGCCGG
ACGCGGCCCCGGTCCCCACGCCACCCACTCAGGCCCCGGCCGCGAGTCGG
TGTCTGAGTTCGCGTCGCTCTCCCCCATGGGAAACTTGAAGAGTTTGGGC
CGAGCCGTGGACGCCTTCCACGCGCACGCACGCACACGCACACGCACGCC
CTCGGCACCGATGGAAACCCCGGGCCGTGGCACTGGCACACTCGTGACAC
GAGTTCCGCGAGATGACCGAGTGCTATATACTACTAGTAGTATATATATC
GTGTATATACTCTCCGACCATCAGAAAAGTTCACTCAAGCCCCCGAAATG
GAGGCGTGACCTGATCACCGGCTGCTGG
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