mRNA_S-ischiensis_contig9.20648.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20648.1
Unique NamemRNA_S-ischiensis_contig9.20648.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2265067..2266017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size951
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.5850847-UTR-S-ischiensis_contig9:2265066..22654681622817372.5850847-UTR-S-ischiensis_contig9:2265066..2265468Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2265067..2265468 +
1695741063.914548-UTR-S-ischiensis_contig9:2265066..22654681695741063.914548-UTR-S-ischiensis_contig9:2265066..2265468Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2265067..2265468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.5995433-CDS-S-ischiensis_contig9:2265468..22660171622817372.5995433-CDS-S-ischiensis_contig9:2265468..2266017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2265469..2266017 +
1695741063.9279206-CDS-S-ischiensis_contig9:2265468..22660171695741063.9279206-CDS-S-ischiensis_contig9:2265468..2266017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2265469..2266017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20648.1prot_S-ischiensis_contig9.20648.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2265469..2266017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20648.1

>prot_S-ischiensis_contig9.20648.1 ID=prot_S-ischiensis_contig9.20648.1|Name=mRNA_S-ischiensis_contig9.20648.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
MASTSPCVPPIHTTLCTCINQASIGLPGATRIDQCICDASVDTVHNVLAY
GSAMPRGMTSTLYTVELYCLLKDDCNQLRGLARHCRLRAAYGFQRFTANS
QAHLGLHGLELKLNTQPAGGSHVWASLESCGSTHATSECSRFTVRKVSHT
WLLPPSPGGSRASARQAHRGATRTGSLGLRSVP
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mRNA from alignment at S-ischiensis_contig9:2265067..2266017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20648.1 ID=mRNA_S-ischiensis_contig9.20648.1|Name=mRNA_S-ischiensis_contig9.20648.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=951bp|location=Sequence derived from alignment at S-ischiensis_contig9:2265067..2266017+ (Schizocladia ischiensis KU_0333)
CCTCCGAGTCGTCCCCACGTGGCATATTTTACAGTTGTGCTGGCTTCCTC
TGCAATTTACAGTATAGTGTGGTCATTAAGTCCTTAAGCAGAAGGGTTCC
CGTACAGCGGCACCTCTGGGACACCCCTGAAAACTTCAAGCTTGCCTCCG
AGTCGTCCCCACGTGGCATATTGTACAGTTATGCTGGTTTCCTCTACAAA
TGTACTTCGAAGTACAGTAAAACTTAGTACTGCGAAGTATGATCACCATC
ATGGCCGCCACAAAGCCTCACCACACGTGGCGGCGGTGGTGTGCTCATAG
CAATAGTTTTTCCCCTTTGCTGTACTCGTACTTCGACCCCACACAACCCT
TCAAGTTCCCTGGTGAGCTGAGGAAGGGCCGTTGATTGAGGTCGTTGGGG
ACATGGCCTCTACCTCACCCTGTGTTCCTCCTATTCACACGACACTGTGT
ACTTGTATCAACCAAGCCTCAATCGGGTTACCGGGCGCTACACGTATCGA
CCAATGTATATGCGACGCGTCTGTAGATACAGTACACAATGTACTTGCGT
ATGGTTCTGCAATGCCGCGTGGTATGACTTCAACTCTATATACTGTGGAG
CTCTACTGTTTACTCAAGGATGACTGCAATCAGTTGCGAGGGCTCGCTCG
GCATTGTAGATTAAGAGCTGCATATGGTTTCCAGAGATTCACCGCCAACT
CACAAGCGCATCTCGGGTTGCACGGACTGGAGCTAAAGCTCAACACGCAG
CCAGCCGGCGGGTCACATGTGTGGGCCTCACTCGAGTCATGCGGTTCAAC
CCACGCGACCTCGGAGTGCAGCAGGTTCACGGTGCGAAAAGTATCTCACA
CGTGGCTCCTTCCCCCAAGCCCCGGGGGATCTCGTGCGTCGGCGAGGCAG
GCCCACAGAGGCGCCACCCGGACGGGTTCTCTTGGTTTGCGATCAGTTCC
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2265067..2266017+

>mRNA_S-ischiensis_contig9.20648.1 ID=mRNA_S-ischiensis_contig9.20648.1|Name=mRNA_S-ischiensis_contig9.20648.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig9:2265067..2266017+ (Schizocladia ischiensis KU_0333)
ATGGCCTCTACCTCACCCTGTGTTCCTCCTATTCACACGACACTGTGTAC
TTGTATCAACCAAGCCTCAATCGGGTTACCGGGCGCTACACGTATCGACC
AATGTATATGCGACGCGTCTGTAGATACAGTACACAATGTACTTGCGTAT
GGTTCTGCAATGCCGCGTGGTATGACTTCAACTCTATATACTGTGGAGCT
CTACTGTTTACTCAAGGATGACTGCAATCAGTTGCGAGGGCTCGCTCGGC
ATTGTAGATTAAGAGCTGCATATGGTTTCCAGAGATTCACCGCCAACTCA
CAAGCGCATCTCGGGTTGCACGGACTGGAGCTAAAGCTCAACACGCAGCC
AGCCGGCGGGTCACATGTGTGGGCCTCACTCGAGTCATGCGGTTCAACCC
ACGCGACCTCGGAGTGCAGCAGGTTCACGGTGCGAAAAGTATCTCACACG
TGGCTCCTTCCCCCAAGCCCCGGGGGATCTCGTGCGTCGGCGAGGCAGGC
CCACAGAGGCGCCACCCGGACGGGTTCTCTTGGTTTGCGATCAGTTCCGA
TGGCCTCTACCTCACCCTGTGTTCCTCCTATTCACACGACACTGTGTACT
TGTATCAACCAAGCCTCAATCGGGTTACCGGGCGCTACACGTATCGACCA
ATGTATATGCGACGCGTCTGTAGATACAGTACACAATGTACTTGCGTATG
GTTCTGCAATGCCGCGTGGTATGACTTCAACTCTATATACTGTGGAGCTC
TACTGTTTACTCAAGGATGACTGCAATCAGTTGCGAGGGCTCGCTCGGCA
TTGTAGATTAAGAGCTGCATATGGTTTCCAGAGATTCACCGCCAACTCAC
AAGCGCATCTCGGGTTGCACGGACTGGAGCTAAAGCTCAACACGCAGCCA
GCCGGCGGGTCACATGTGTGGGCCTCACTCGAGTCATGCGGTTCAACCCA
CGCGACCTCGGAGTGCAGCAGGTTCACGGTGCGAAAAGTATCTCACACGT
GGCTCCTTCCCCCAAGCCCCGGGGGATCTCGTGCGTCGGCGAGGCAGGCC
CACAGAGGCGCCACCCGGACGGGTTCTCTTGGTTTGCGATCAGTTCCG
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