mRNA_S-ischiensis_contig11.1999.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1999.1
Unique NamemRNA_S-ischiensis_contig11.1999.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:326928..327284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0470963-UTR-S-ischiensis_contig11:326927..3269421622815582.0470963-UTR-S-ischiensis_contig11:326927..326942Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 326928..326942 +
1695739784.0320778-UTR-S-ischiensis_contig11:326927..3269421695739784.0320778-UTR-S-ischiensis_contig11:326927..326942Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 326928..326942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0581129-CDS-S-ischiensis_contig11:326942..3272841622815582.0581129-CDS-S-ischiensis_contig11:326942..327284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 326943..327284 +
1695739784.0736842-CDS-S-ischiensis_contig11:326942..3272841695739784.0736842-CDS-S-ischiensis_contig11:326942..327284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 326943..327284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1999.1prot_S-ischiensis_contig11.1999.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 326943..327284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1999.1

>prot_S-ischiensis_contig11.1999.1 ID=prot_S-ischiensis_contig11.1999.1|Name=mRNA_S-ischiensis_contig11.1999.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
MYSHLELYMYVSMLKGTRGAQVELLESTHVSMYLYCIHRSRVPPGADRQT
RSPPLPRARSLIAATSSTNTCNHIHPSIRPSAPSTDKALQVLKLNSSRGR
REPQSSRYDPPTPA
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mRNA from alignment at S-ischiensis_contig11:326928..327284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1999.1 ID=mRNA_S-ischiensis_contig11.1999.1|Name=mRNA_S-ischiensis_contig11.1999.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=357bp|location=Sequence derived from alignment at S-ischiensis_contig11:326928..327284+ (Schizocladia ischiensis KU_0333)
GTGCGCATAAGTAGTATGTATTCGCATCTGGAGCTCTACATGTACGTTTC
CATGTTGAAGGGCACCCGCGGAGCACAAGTAGAGCTCCTCGAGAGCACGC
ATGTAAGTATGTACTTGTATTGTATACACAGGAGCCGCGTGCCGCCGGGC
GCGGACCGGCAGACACGGTCGCCGCCGCTGCCGCGCGCTCGCTCGCTCAT
CGCAGCCACATCATCCACAAACACCTGTAATCACATCCACCCATCCATCC
GTCCGTCCGCCCCGTCTACCGATAAAGCTCTACAAGTGTTAAAACTTAAC
TCTTCACGGGGCCGCCGCGAGCCACAATCCAGTAGGTACGATCCGCCTAC
ACCTGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:326928..327284+

>mRNA_S-ischiensis_contig11.1999.1 ID=mRNA_S-ischiensis_contig11.1999.1|Name=mRNA_S-ischiensis_contig11.1999.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig11:326928..327284+ (Schizocladia ischiensis KU_0333)
ATGTATTCGCATCTGGAGCTCTACATGTACGTTTCCATGTTGAAGGGCAC
CCGCGGAGCACAAGTAGAGCTCCTCGAGAGCACGCATGTAAGTATGTACT
TGTATTGTATACACAGGAGCCGCGTGCCGCCGGGCGCGGACCGGCAGACA
CGGTCGCCGCCGCTGCCGCGCGCTCGCTCGCTCATCGCAGCCACATCATC
CACAAACACCTGTAATCACATCCACCCATCCATCCGTCCGTCCGCCCCGT
CTACCGATAAAGCTCTACAAGTGTTAAAACTTAACTCTTCACGGGGCCGC
CGCGAGCCACAATCCAGTAGGTACGATCCGCCTACACCTGCTATGTATTC
GCATCTGGAGCTCTACATGTACGTTTCCATGTTGAAGGGCACCCGCGGAG
CACAAGTAGAGCTCCTCGAGAGCACGCATGTAAGTATGTACTTGTATTGT
ATACACAGGAGCCGCGTGCCGCCGGGCGCGGACCGGCAGACACGGTCGCC
GCCGCTGCCGCGCGCTCGCTCGCTCATCGCAGCCACATCATCCACAAACA
CCTGTAATCACATCCACCCATCCATCCGTCCGTCCGCCCCGTCTACCGAT
AAAGCTCTACAAGTGTTAAAACTTAACTCTTCACGGGGCCGCCGCGAGCC
ACAATCCAGTAGGTACGATCCGCCTACACCTGCT
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