mRNA_S-ischiensis_contig9.20594.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20594.1
Unique NamemRNA_S-ischiensis_contig9.20594.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1719530..1719947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size418
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20594.1prot_S-ischiensis_contig9.20594.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1719546..1719851 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.1263943-UTR-S-ischiensis_contig9:1719529..17195451622817372.1263943-UTR-S-ischiensis_contig9:1719529..1719545Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1719530..1719545 +
1695741063.662366-UTR-S-ischiensis_contig9:1719529..17195451695741063.662366-UTR-S-ischiensis_contig9:1719529..1719545Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1719530..1719545 +
1622817372.152491-UTR-S-ischiensis_contig9:1719851..17199471622817372.152491-UTR-S-ischiensis_contig9:1719851..1719947Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1719852..1719947 +
1695741063.6916468-UTR-S-ischiensis_contig9:1719851..17199471695741063.6916468-UTR-S-ischiensis_contig9:1719851..1719947Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1719852..1719947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.1400547-CDS-S-ischiensis_contig9:1719545..17198511622817372.1400547-CDS-S-ischiensis_contig9:1719545..1719851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1719546..1719851 +
1695741063.673842-CDS-S-ischiensis_contig9:1719545..17198511695741063.673842-CDS-S-ischiensis_contig9:1719545..1719851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1719546..1719851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20594.1

>prot_S-ischiensis_contig9.20594.1 ID=prot_S-ischiensis_contig9.20594.1|Name=mRNA_S-ischiensis_contig9.20594.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MALFRYRWSGSGSARTSPSARASRLVHQGAWAIVGPVGSTPRRHRPGILG
APQQKCPFRLRWAGAKIGPKRGKKDPDEVKEGLGLVWGHCQAMPMDIPPL
K*
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mRNA from alignment at S-ischiensis_contig9:1719530..1719947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20594.1 ID=mRNA_S-ischiensis_contig9.20594.1|Name=mRNA_S-ischiensis_contig9.20594.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=418bp|location=Sequence derived from alignment at S-ischiensis_contig9:1719530..1719947+ (Schizocladia ischiensis KU_0333)
GCGTGAAGGGGACAACATGGCTCTGTTCCGATACCGCTGGAGCGGGTCGG
GGTCAGCGAGAACGTCGCCAAGCGCTCGTGCTTCTCGGCTTGTCCATCAG
GGTGCGTGGGCCATAGTGGGCCCCGTCGGAAGCACCCCGAGGCGCCATAG
GCCAGGAATTTTGGGCGCACCCCAGCAAAAATGCCCTTTCCGGCTCAGGT
GGGCCGGTGCCAAAATAGGCCCAAAAAGGGGCAAGAAAGACCCTGATGAA
GTGAAAGAAGGGCTTGGGCTAGTGTGGGGCCATTGTCAAGCAATGCCTAT
GGATATCCCCCCACTGAAATGACTCCACACAGCACAATGACAAGAAAATG
CCCCTCAGAGGCCCCAAACGGGCACCCGGAATGCGTGATTTGGAGGCGTT
GCTGCAGCAGGGCTAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1719530..1719947+

>mRNA_S-ischiensis_contig9.20594.1 ID=mRNA_S-ischiensis_contig9.20594.1|Name=mRNA_S-ischiensis_contig9.20594.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig9:1719530..1719947+ (Schizocladia ischiensis KU_0333)
ATGGCTCTGTTCCGATACCGCTGGAGCGGGTCGGGGTCAGCGAGAACGTC
GCCAAGCGCTCGTGCTTCTCGGCTTGTCCATCAGGGTGCGTGGGCCATAG
TGGGCCCCGTCGGAAGCACCCCGAGGCGCCATAGGCCAGGAATTTTGGGC
GCACCCCAGCAAAAATGCCCTTTCCGGCTCAGGTGGGCCGGTGCCAAAAT
AGGCCCAAAAAGGGGCAAGAAAGACCCTGATGAAGTGAAAGAAGGGCTTG
GGCTAGTGTGGGGCCATTGTCAAGCAATGCCTATGGATATCCCCCCACTG
AAATGAATGGCTCTGTTCCGATACCGCTGGAGCGGGTCGGGGTCAGCGAG
AACGTCGCCAAGCGCTCGTGCTTCTCGGCTTGTCCATCAGGGTGCGTGGG
CCATAGTGGGCCCCGTCGGAAGCACCCCGAGGCGCCATAGGCCAGGAATT
TTGGGCGCACCCCAGCAAAAATGCCCTTTCCGGCTCAGGTGGGCCGGTGC
CAAAATAGGCCCAAAAAGGGGCAAGAAAGACCCTGATGAAGTGAAAGAAG
GGCTTGGGCTAGTGTGGGGCCATTGTCAAGCAATGCCTATGGATATCCCC
CCACTGAAATGA
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