mRNA_S-ischiensis_contig9.20507.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20507.1
Unique NamemRNA_S-ischiensis_contig9.20507.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:880907..881450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size545
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.3909535-CDS-S-ischiensis_contig9:880906..8812091622817371.3909535-CDS-S-ischiensis_contig9:880906..881209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 880907..881209 +
1695741063.2715032-CDS-S-ischiensis_contig9:880906..8812091695741063.2715032-CDS-S-ischiensis_contig9:880906..881209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 880907..881209 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.402001-UTR-S-ischiensis_contig9:881209..8814501622817371.402001-UTR-S-ischiensis_contig9:881209..881450Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 881210..881450 +
1695741063.2815464-UTR-S-ischiensis_contig9:881209..8814501695741063.2815464-UTR-S-ischiensis_contig9:881209..881450Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 881210..881450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20507.1prot_S-ischiensis_contig9.20507.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 880907..881209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20507.1

>prot_S-ischiensis_contig9.20507.1 ID=prot_S-ischiensis_contig9.20507.1|Name=mRNA_S-ischiensis_contig9.20507.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
TRFNLLSISLLKILWSTCLEVLPYHNCTKSLSVCPPKVEICPLITHGLIA
SQDYFCRARPEYCTYECYCTYCCTEYILCTYWCTYYCTYCCTYCCTSAYV
*
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mRNA from alignment at S-ischiensis_contig9:880907..881450+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20507.1 ID=mRNA_S-ischiensis_contig9.20507.1|Name=mRNA_S-ischiensis_contig9.20507.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=544bp|location=Sequence derived from alignment at S-ischiensis_contig9:880907..881450+ (Schizocladia ischiensis KU_0333)
ACGCGATTTAACCTCCTTTCGATTTCGCTGTTAAAGATACTTTGGTCGAC
GTGCTTGGAAGTACTTCCTTACCACAATTGTACAAAAAGTCTGTCTGTCT
GCCCCCCGAAGGTTGAGATCTGTCCGTTGATCACGCACGGGTTAATAGCC
TCCCAGGACTATTTCTGTCGAGCACGGCCCGAGTACTGTACATACGAGTG
CTACTGTACATACTGCTGTACTGAGTACATACTATGTACATACTGGTGTA
CATACTACTGTACATACTGCTGTACATACTGCTGTACGAGTGCATACGTA
TAATGTACATGCTACTGTACAGTACTGAGTACTGAACATGCCGCTGTACA
TGCTACTGCACTGAGTACTGTACATGCTGTGCGTACTGTACGTACTCCAG
TGCACTCTAGTATTTGTGCAGCACATTGGCATCAACCGGAGGCGGCTACC
TTCCTTGAGGCTGTCCGTCCCTCCTTCCAACTCACTCGTTGGCATTCATT
CCCGAGGCTGCTCATCTTCCTTCCAACTCGCCGCCGCCGCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:880907..881450+

>mRNA_S-ischiensis_contig9.20507.1 ID=mRNA_S-ischiensis_contig9.20507.1|Name=mRNA_S-ischiensis_contig9.20507.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:880907..881450+ (Schizocladia ischiensis KU_0333)
ACGCGATTTAACCTCCTTTCGATTTCGCTGTTAAAGATACTTTGGTCGAC
GTGCTTGGAAGTACTTCCTTACCACAATTGTACAAAAAGTCTGTCTGTCT
GCCCCCCGAAGGTTGAGATCTGTCCGTTGATCACGCACGGGTTAATAGCC
TCCCAGGACTATTTCTGTCGAGCACGGCCCGAGTACTGTACATACGAGTG
CTACTGTACATACTGCTGTACTGAGTACATACTATGTACATACTGGTGTA
CATACTACTGTACATACTGCTGTACATACTGCTGTACGAGTGCATACGTA
TAAACGCGATTTAACCTCCTTTCGATTTCGCTGTTAAAGATACTTTGGTC
GACGTGCTTGGAAGTACTTCCTTACCACAATTGTACAAAAAGTCTGTCTG
TCTGCCCCCCGAAGGTTGAGATCTGTCCGTTGATCACGCACGGGTTAATA
GCCTCCCAGGACTATTTCTGTCGAGCACGGCCCGAGTACTGTACATACGA
GTGCTACTGTACATACTGCTGTACTGAGTACATACTATGTACATACTGGT
GTACATACTACTGTACATACTGCTGTACATACTGCTGTACGAGTGCATAC
GTATAA
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