mRNA_S-ischiensis_contig9.20486.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20486.1
Unique NamemRNA_S-ischiensis_contig9.20486.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:678049..678509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20486.1prot_S-ischiensis_contig9.20486.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 678167..678502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.1319053-UTR-S-ischiensis_contig9:678048..6781661622817371.1319053-UTR-S-ischiensis_contig9:678048..678166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 678049..678166 +
1695741063.1586938-UTR-S-ischiensis_contig9:678048..6781661695741063.1586938-UTR-S-ischiensis_contig9:678048..678166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 678049..678166 +
1622817371.1603622-UTR-S-ischiensis_contig9:678502..6785091622817371.1603622-UTR-S-ischiensis_contig9:678502..678509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 678503..678509 +
1695741063.1806965-UTR-S-ischiensis_contig9:678502..6785091695741063.1806965-UTR-S-ischiensis_contig9:678502..678509Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 678503..678509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.1472175-CDS-S-ischiensis_contig9:678166..6785021622817371.1472175-CDS-S-ischiensis_contig9:678166..678502Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 678167..678502 +
1695741063.1703453-CDS-S-ischiensis_contig9:678166..6785021695741063.1703453-CDS-S-ischiensis_contig9:678166..678502Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 678167..678502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20486.1

>prot_S-ischiensis_contig9.20486.1 ID=prot_S-ischiensis_contig9.20486.1|Name=mRNA_S-ischiensis_contig9.20486.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MGGCLLNVVPGYPTACMRTCTPRKRTRLVSYQKGEAYPRRPGPSPSPTDN
RSLPPSSPPSSSSVSGPSPSLAQRGALCPPPARRHDADPPALSAPLPGGF
FRRPPCPNRCC*
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mRNA from alignment at S-ischiensis_contig9:678049..678509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20486.1 ID=mRNA_S-ischiensis_contig9.20486.1|Name=mRNA_S-ischiensis_contig9.20486.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=461bp|location=Sequence derived from alignment at S-ischiensis_contig9:678049..678509+ (Schizocladia ischiensis KU_0333)
CAACCAGTGAGTCCTGCCGAGCGGTAAGTTGGAAGTACGAGTGCATGGTG
AGAGGGGATTTTAACGCCGCCCACCGTGACGTGCGTGGTGCGGTTATTGC
AACGATTCATAGCGACGCATGGGGGGCTGTTTGTTGAACGTTGTGCCTGG
GTACCCGACGGCGTGCATGCGCACGTGCACCCCCCGGAAGCGAACTCGCC
TGGTGTCATACCAGAAGGGTGAGGCGTACCCGCGGCGGCCGGGGCCCAGC
CCGTCCCCGACCGACAACCGCTCGCTCCCTCCCTCTTCCCCCCCCTCCTC
CTCCTCCGTGTCAGGGCCCTCCCCGTCACTCGCCCAACGCGGGGCACTTT
GTCCGCCACCAGCACGGCGGCATGATGCTGACCCGCCCGCACTGAGCGCC
CCCCTCCCTGGCGGCTTCTTCCGCCGGCCGCCCTGTCCCAACCGCTGCTG
CTGACACCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:678049..678509+

>mRNA_S-ischiensis_contig9.20486.1 ID=mRNA_S-ischiensis_contig9.20486.1|Name=mRNA_S-ischiensis_contig9.20486.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig9:678049..678509+ (Schizocladia ischiensis KU_0333)
ATGGGGGGCTGTTTGTTGAACGTTGTGCCTGGGTACCCGACGGCGTGCAT
GCGCACGTGCACCCCCCGGAAGCGAACTCGCCTGGTGTCATACCAGAAGG
GTGAGGCGTACCCGCGGCGGCCGGGGCCCAGCCCGTCCCCGACCGACAAC
CGCTCGCTCCCTCCCTCTTCCCCCCCCTCCTCCTCCTCCGTGTCAGGGCC
CTCCCCGTCACTCGCCCAACGCGGGGCACTTTGTCCGCCACCAGCACGGC
GGCATGATGCTGACCCGCCCGCACTGAGCGCCCCCCTCCCTGGCGGCTTC
TTCCGCCGGCCGCCCTGTCCCAACCGCTGCTGCTGAATGGGGGGCTGTTT
GTTGAACGTTGTGCCTGGGTACCCGACGGCGTGCATGCGCACGTGCACCC
CCCGGAAGCGAACTCGCCTGGTGTCATACCAGAAGGGTGAGGCGTACCCG
CGGCGGCCGGGGCCCAGCCCGTCCCCGACCGACAACCGCTCGCTCCCTCC
CTCTTCCCCCCCCTCCTCCTCCTCCGTGTCAGGGCCCTCCCCGTCACTCG
CCCAACGCGGGGCACTTTGTCCGCCACCAGCACGGCGGCATGATGCTGAC
CCGCCCGCACTGAGCGCCCCCCTCCCTGGCGGCTTCTTCCGCCGGCCGCC
CTGTCCCAACCGCTGCTGCTGA
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