mRNA_S-ischiensis_contig9.20476.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20476.1
Unique NamemRNA_S-ischiensis_contig9.20476.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.670e-28
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = -2
Query:  277 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMV 525
            AIK KMPWL  +RVVVQQDGASPHTGKGNPE LN  G +R W +EL+TQ  QSPDLNINDLG F SLK  V G    +++E+V
Sbjct:  282 AIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3)

HSP 1 Score: 84.7 bits (208), Expect = 5.140e-16
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
            AIKAK P    R +V+QQD A PH    + +++  V  S  + I L  Q   SPDLNINDLGFF  ++        TTV E+V  V + YE+    TL  VW SL     ++LR  G+N  ++ H G
Sbjct:  295 AIKAKWPLDCNRPIVIQQDNARPHICNTDLDFIE-VAKSDGFNITLANQPANSPDLNINDLGFFRVIQGLQHEKAPTTVCELVGAVLEAYEEVSDSTLNHVWLSLMGCMTEILRKDGNNNYKLPHIG 420          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.230e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  154 GRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHT-TVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVE 495
            G  + +QQDGA PHT      +L   G    + +++ TQ  QSPDLN+NDLGFF SLK          +VEEM++ +   YE+  A  L+R++ SL + +  +L+  GDN    E
Sbjct:   29 GTPIWIQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQE 141          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00053FEDAB (uncharacterized protein LOC104888959 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEDAB)

HSP 1 Score: 77.4 bits (189), Expect = 6.710e-14
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
            AIK+  P    +++ +QQD A PH    +  +L    S+  + I L+ Q  QSPDLN+ DLGFF S+++        T+EE+V++V  EY+ YD KT+   W        +VL++ G N  +  H G
Sbjct:  111 AIKSNWPEFGCKQIWIQQDNARPHIKPDDEAFLQ-AASTDGFDILLVYQPPQSPDLNLLDLGFFKSIQSIQHTNFPETIEELVKSVQAEYDAYDPKTINYTWLHFMYVMLEVLKVEGGNNYKNPHKG 236          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 75.5 bits (184), Expect = 8.640e-14
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = -2
Query:  151 KMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 513
            K+ W  G+RV +Q D A PH    +PE +    S   W + +  Q   SPD N+NDLGFF S+++        T+E++V  V + Y + +  T+++V+ +L S     + + G N+ ++ H
Sbjct:   26 KVVWPSGKRVFLQHDNAKPHVAADDPEVVAAC-SDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPH 145          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 75.5 bits (184), Expect = 3.920e-13
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = -2
Query:  151 KMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 513
            K+ W  G+RV +Q D A PH    +PE +    S   W + +  Q   SPD N+NDLGFF S+++        T+E++V  V + Y + +  T+++V+ +L S     + + G N+ ++ H
Sbjct:  127 KVVWPSGKRVFLQHDNAKPHVAADDPEVVAAC-SDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPH 246          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A484LEG5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LEG5_9ASTE)

HSP 1 Score: 74.7 bits (182), Expect = 6.450e-13
Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
            AIK K P    R V++QQD A PH    + ++L    +   W I+L  Q + SPDLN+ DLGFF ++ +    +G  ++++++  V   +E+   + L  V+ +L    +QVL   G NQ ++ H G
Sbjct:   89 AIKEKWPG-SSRNVIIQQDNAKPHVDGSDLQFLQ-AATEGEWNIKLKFQPLNSPDLNVLDLGFFRAIDSLQDQSGPRSLDDLISAVTTAFEELSHEKLNNVFLTLQGVMSQVLATNGGNQFKIPHIG 213          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00053FF3FD (uncharacterized protein LOC104886291 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF3FD)

HSP 1 Score: 75.9 bits (185), Expect = 6.630e-13
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = -2
Query:  151 IKAKMPWLEG--RRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 522
            I AK P  +G  + + +QQD A  H  + +P++   V     +TI L+ Q   SPDLNI DLGFF S+++ +      +++ ++E VN  Y + D  TL  VW SL    N++L++ G N   V H
Sbjct:  292 IIAKWPQYDGGPKTIYIQQDNAKAHISQEDPQWQT-VCEQDGFTIILIQQPPNSPDLNILDLGFFRSIQSLMHKKIPKSIDSLLEAVNQAYNELDHTTLSNVWLSLQYVMNEILKVGGGNNYNVPH 416          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI000B78E139 (uncharacterized protein LOC110707397 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78E139)

HSP 1 Score: 75.1 bits (183), Expect = 1.310e-12
Identity = 41/125 (32.80%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  151 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 525
            AI +K P    + VV+Q D A PH    + E++    ++ R+ I+ + Q VQSPDLN+ DLG F S+++    +  T ++E+V  V D YE ++ +  + +W SL     ++L+  G N+ ++ H
Sbjct:  354 AIISKWPESLAKNVVIQWDNARPHQVPKDAEFMEAT-TAHRFNIQFVFQPVQSPDLNVLDLGLFRSIQSLQYQSFPTNLDELVVKVKDSYETFNHQVNKYIWLSLQKCMIEILKAEGGNKYKIPH 477          
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00149399A0 (uncharacterized protein LOC117856442 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI00149399A0)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-12
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  151 VVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 486
            + +QQD    H    +P +L  V ++    I L+ Q   SPD+N+ DL FF SL++       TT+EE+++ V +EYE YD + L RV+ SL     +V+ + G N+ +  H
Sbjct:  120 IYIQQDNTRTHVSLNDPAFLQAVAATGL-DIRLMQQPPNSPDMNVLDLDFFRSLQSLTDSRNPTTIEELIQGVEEEYEAYDVENLNRVFLSLQMCMKEVMNIGGGNRYKNPH 230          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE4.670e-2866.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0007EF40B35.140e-1640.16uncharacterized protein LOC108194535 n=1 Tax=Daucu... [more]
A0A7S2FC44_9STRA2.230e-1538.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI00053FEDAB6.710e-1435.43uncharacterized protein LOC104888959 n=1 Tax=Beta ... [more]
A0A081AGH7_PHYPR8.640e-1431.40Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PEH8_PHYPN3.920e-1331.40Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A484LEG5_9ASTE6.450e-1333.07Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI00053FF3FD6.630e-1335.71uncharacterized protein LOC104886291 n=1 Tax=Beta ... [more]
UPI000B78E1391.310e-1232.80uncharacterized protein LOC110707397 n=1 Tax=Cheno... [more]
UPI00149399A01.490e-1234.82uncharacterized protein LOC117856442 n=1 Tax=Setar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:627428..627953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.0120914-CDS-S-ischiensis_contig9:627427..6277571622817371.0120914-CDS-S-ischiensis_contig9:627427..627757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 627428..627757 +
1695741063.1146579-CDS-S-ischiensis_contig9:627427..6277571695741063.1146579-CDS-S-ischiensis_contig9:627427..627757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 627428..627757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.02479-UTR-S-ischiensis_contig9:627757..6279531622817371.02479-UTR-S-ischiensis_contig9:627757..627953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 627758..627953 +
1695741063.126531-UTR-S-ischiensis_contig9:627757..6279531695741063.126531-UTR-S-ischiensis_contig9:627757..627953Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 627758..627953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20476.1prot_S-ischiensis_contig9.20476.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 627428..627757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20476.1

>prot_S-ischiensis_contig9.20476.1 ID=prot_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
TRCCTLKIRLLLVNLSVTPKHEIHGPAVGIPVDFRPFAGKAPGRPARIAG
VFYLCLVIPQKSKHLIVSTEEALPNPLKGLSVILLVLVVHGLNHLFNGRV
SGPQNSGLE*
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mRNA from alignment at S-ischiensis_contig9:627428..627953+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20476.1 ID=mRNA_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=526bp|location=Sequence derived from alignment at S-ischiensis_contig9:627428..627953+ (Schizocladia ischiensis KU_0333)
ACGCGATGTTGCACTTTGAAAATTAGATTACTCTTGGTCAACCTCAGTGT CACACCCAAACACGAAATCCACGGCCCAGCGGTAGGCATCCCGGTCGACT TTCGGCCGTTTGCCGGCAAAGCTCCCGGCAGACCCGCCCGCATTGCCGGA GTGTTCTACCTCTGCCTGGTTATCCCCCAGAAGTCTAAGCACTTGATTGT GTCTACTGAAGAGGCTCTGCCAAACCCTCTCAAGGGTCTTAGCGTCATAC TTCTCGTACTCGTCGTTCACGGTCTCAACCATCTCTTCAACGGTCGTGTG TCCGGCCCCCAGAACTCAGGCCTTGAGTGACACAAAGAAGCCTAAGTCGT TGATGTTGAGGTCTGGGGACTGCACCGATTGTGTAAGCAACTCTATGGTC CACCGCCTAGATGACCCTACGTAGTTGAGGTACTCGGGATTGCCTTTCCC CGTGTGTGGGCTCGCTCCGTCCTGCTGAACGACGACCCGGCGGCCCTCCA GCCAGGGCATCTTGGCCTTGATTGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:627428..627953+

>mRNA_S-ischiensis_contig9.20476.1 ID=mRNA_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig9:627428..627953+ (Schizocladia ischiensis KU_0333)
ACGCGATGTTGCACTTTGAAAATTAGATTACTCTTGGTCAACCTCAGTGT
CACACCCAAACACGAAATCCACGGCCCAGCGGTAGGCATCCCGGTCGACT
TTCGGCCGTTTGCCGGCAAAGCTCCCGGCAGACCCGCCCGCATTGCCGGA
GTGTTCTACCTCTGCCTGGTTATCCCCCAGAAGTCTAAGCACTTGATTGT
GTCTACTGAAGAGGCTCTGCCAAACCCTCTCAAGGGTCTTAGCGTCATAC
TTCTCGTACTCGTCGTTCACGGTCTCAACCATCTCTTCAACGGTCGTGTG
TCCGGCCCCCAGAACTCAGGCCTTGAGTGAACGCGATGTTGCACTTTGAA
AATTAGATTACTCTTGGTCAACCTCAGTGTCACACCCAAACACGAAATCC
ACGGCCCAGCGGTAGGCATCCCGGTCGACTTTCGGCCGTTTGCCGGCAAA
GCTCCCGGCAGACCCGCCCGCATTGCCGGAGTGTTCTACCTCTGCCTGGT
TATCCCCCAGAAGTCTAAGCACTTGATTGTGTCTACTGAAGAGGCTCTGC
CAAACCCTCTCAAGGGTCTTAGCGTCATACTTCTCGTACTCGTCGTTCAC
GGTCTCAACCATCTCTTCAACGGTCGTGTGTCCGGCCCCCAGAACTCAGG
CCTTGAGTGA
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