mRNA_S-ischiensis_contig9.20470.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20470.1
Unique NamemRNA_S-ischiensis_contig9.20470.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20470.1 vs. uniprot
Match: A0A7S2SMI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMI9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.240e-13
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = -1 
Query:  166 GHHDVPELATDDMVLLIVCAAVAAYPRSCSLLMDVRYVKAFHFGRSSTTPAAFALANFEVAIEWILAKAG 375
            G  D P LATDD+V  ++   + AYP SCSL +D+ Y+K FHF  +ST+   F+L++FEVA++W+  + G
Sbjct:   49 GVDDGPGLATDDIVDALIYVIIQAYPHSCSLPVDLEYIKQFHFLPTSTSAFGFSLSHFEVALDWLFQRIG 118
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BLAST of mRNA_S-ischiensis_contig9.20470.1 vs. uniprot
Match: A0A7S1G4V1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4V1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.720e-9
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = -1 
Query:  169 ELATDDMVLLIVCAAVAAYPRSCSLLMDVRYVKAFHFGRSSTTPAAFALANFEVAIEWILAKA 357
            EL+TDD++ L++   V +YP S  LL  + Y++ +HF  S+TT   + LANF+VA+ W+L++A
Sbjct:  157 ELSTDDVLDLLLWVIVRSYPTSAHLLTHLTYIQRYHFVNSNTTILGYTLANFQVAVNWLLSRA 219
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BLAST of mRNA_S-ischiensis_contig9.20470.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.580e-8
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = -1 
Query:  145 ELATDDMVLLIVCAAVAA-------------------------YPRSCSLLMDVRYVKAFHFGRSSTTPAAFALANFEVAIEWILAKAGLKLSEVP 357
            ++ATDD+V+L+VC  + A                              S L D+ ++KAFHF   ST+   FA++ FEVA+EW+L K G +L+E P
Sbjct:  183 QMATDDIVVLLVCCLIEAGATVGGSDANVSAGKSXXXXXXXXXXXXRTSFLADLAFIKAFHFCEDSTSAVYFAVSTFEVALEWLLGKVGRRLAETP 278
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BLAST of mRNA_S-ischiensis_contig9.20470.1 vs. uniprot
Match: F0YJQ2_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJQ2_AURAN)

HSP 1 Score: 51.2 bits (121), Expect = 6.270e-5
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = -1 
Query:  130 PELATDDMVLLIVCAAVAAYPRSC--SLLMDVRYVKAFHFGRSSTTPAAFALANFEVAIEWILAKAGLKLSEVPYPPGR 360
            PELATDD++ LIV   V+    S   +L  D++YV+ FHF   ST+   F L+NFEVA +++L +      + P PP +
Sbjct:  380 PELATDDLIDLIVHLLVSHRDASSVPNLPTDLKYVQMFHFVEVSTSALGFFLSNFEVANDFLLDRG----RDEPRPPAK 454
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2SMI9_9STRA1.240e-1345.71Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1G4V1_9STRA2.720e-942.86Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6H5JWJ8_9PHAE1.580e-834.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJQ2_AURAN6.270e-540.51Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:607160..607536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.9082336-CDS-S-ischiensis_contig9:607159..6075341622817370.9082336-CDS-S-ischiensis_contig9:607159..607534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 607160..607534 +
1695741063.0748134-CDS-S-ischiensis_contig9:607159..6075341695741063.0748134-CDS-S-ischiensis_contig9:607159..607534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 607160..607534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20470.1prot_S-ischiensis_contig9.20470.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 607160..607534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20470.1

>prot_S-ischiensis_contig9.20470.1 ID=prot_S-ischiensis_contig9.20470.1|Name=mRNA_S-ischiensis_contig9.20470.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
QRRTLCGVSTLFGVGPLSARSGPAARGPRGHAQLGGARAEPPPPPRGVGY
LGQFQARLGQDPLDRHLEVGQGEGGRGSARSPKVKGLDVAHVHEEGAGAR
VGRNGRAHDQQHHVVRRELGHVVVP
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mRNA from alignment at S-ischiensis_contig9:607160..607536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20470.1 ID=mRNA_S-ischiensis_contig9.20470.1|Name=mRNA_S-ischiensis_contig9.20470.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=377bp|location=Sequence derived from alignment at S-ischiensis_contig9:607160..607536+ (Schizocladia ischiensis KU_0333)
CAGAGGAGGACTCTGTGCGGCGTGAGCACTCTGTTCGGCGTGGGGCCTCT
CTCCGCCAGGTCGGGGCCTGCCGCCCGGGGCCCGCGGGGTCACGCGCAGC
TCGGCGGTGCCCGGGCCGAGCCCCCCCCGCCTCCCCGGGGGGTAGGGTAC
CTCGGACAGTTTCAGGCCCGCCTTGGCCAGGATCCACTCGATCGCCACCT
CGAAGTTGGCCAGGGCGAAGGCGGCCGGGGTAGTGCTCGATCGCCCAAAG
TGAAAGGCCTTGACGTAGCGCACGTCCATGAGGAGGGAGCAGGAGCGCGG
GTAGGCCGCAACGGCCGCGCACACGATCAGCAGCACCATGTCGTCCGTCG
CGAGCTCGGGCACGTCGTGGTGCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:607160..607536+

>mRNA_S-ischiensis_contig9.20470.1 ID=mRNA_S-ischiensis_contig9.20470.1|Name=mRNA_S-ischiensis_contig9.20470.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig9:607160..607536+ (Schizocladia ischiensis KU_0333)
CAGAGGAGGACTCTGTGCGGCGTGAGCACTCTGTTCGGCGTGGGGCCTCT
CTCCGCCAGGTCGGGGCCTGCCGCCCGGGGCCCGCGGGGTCACGCGCAGC
TCGGCGGTGCCCGGGCCGAGCCCCCCCCGCCTCCCCGGGGGGTAGGGTAC
CTCGGACAGTTTCAGGCCCGCCTTGGCCAGGATCCACTCGATCGCCACCT
CGAAGTTGGCCAGGGCGAAGGCGGCCGGGGTAGTGCTCGATCGCCCAAAG
TGAAAGGCCTTGACGTAGCGCACGTCCATGAGGAGGGAGCAGGAGCGCGG
GTAGGCCGCAACGGCCGCGCACACGATCAGCAGCACCATGTCGTCCGTCG
CGAGCTCGGGCACGTCGTGGTGCCCCAGAGGAGGACTCTGTGCGGCGTGA
GCACTCTGTTCGGCGTGGGGCCTCTCTCCGCCAGGTCGGGGCCTGCCGCC
CGGGGCCCGCGGGGTCACGCGCAGCTCGGCGGTGCCCGGGCCGAGCCCCC
CCCGCCTCCCCGGGGGGTAGGGTACCTCGGACAGTTTCAGGCCCGCCTTG
GCCAGGATCCACTCGATCGCCACCTCGAAGTTGGCCAGGGCGAAGGCGGC
CGGGGTAGTGCTCGATCGCCCAAAGTGAAAGGCCTTGACGTAGCGCACGT
CCATGAGGAGGGAGCAGGAGCGCGGGTAGGCCGCAACGGCCGCGCACACG
ATCAGCAGCACCATGTCGTCCGTCGCGAGCTCGGGCACGTCGTGGTGCCC
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