mRNA_S-ischiensis_contig9.20803.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20803.1
Unique NamemRNA_S-ischiensis_contig9.20803.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3412002..3412588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.5430708-CDS-S-ischiensis_contig9:3412003..34121711622817369.5430708-CDS-S-ischiensis_contig9:3412003..3412171Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412004..3412171 -
1695741062.363889-CDS-S-ischiensis_contig9:3412003..34121711695741062.363889-CDS-S-ischiensis_contig9:3412003..3412171Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412004..3412171 -
1622817369.5573914-CDS-S-ischiensis_contig9:3412486..34125881622817369.5573914-CDS-S-ischiensis_contig9:3412486..3412588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412487..3412588 -
1695741062.374488-CDS-S-ischiensis_contig9:3412486..34125881695741062.374488-CDS-S-ischiensis_contig9:3412486..3412588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412487..3412588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20803.1prot_S-ischiensis_contig9.20803.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3412004..3412588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20803.1

>prot_S-ischiensis_contig9.20803.1 ID=prot_S-ischiensis_contig9.20803.1|Name=mRNA_S-ischiensis_contig9.20803.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
SGPTVVIEAPGPNRLMLEGGSVAEPNTITLGGPEGDWNMVQRGTGPEQPS
SSDESLWHDPLAAQAMSGALLLSHEARSGGGGGGGGGGSG
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mRNA from alignment at S-ischiensis_contig9:3412002..3412588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20803.1 ID=mRNA_S-ischiensis_contig9.20803.1|Name=mRNA_S-ischiensis_contig9.20803.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=587bp|location=Sequence derived from alignment at S-ischiensis_contig9:3412002..3412588- (Schizocladia ischiensis KU_0333)
AGCGGGCCGACCGTGGTGATTGAGGCGCCCGGGCCGAACCGCTTGATGCT
GGAGGGGGGGTCGGTGGCTGAGCCCAATACTATCACGCTCGGAGGGCCCG
AGGTGGGTGGGCTTTTTGCTGTGATTATTGCCGGTGGCGGGCTGTCGTGT
ATGCCTCGCCCGGTACTGGGTGCTCTGAAGTGCGGTGATGGAATATCTAC
GCAAGTCAACCTATTTATCGACAGTACTCATCTACTTGGAAGTATATATA
TATATATTGATAGTCGATATCCGATAGTATGACCCCGCACTTAATCAAAG
TACTTCGACGTACCGTAGTTAGTAATGCCACCCACAAAATCAGTCGAGCC
CGATAACTATCTACTGATCGATATTCCATCACTGTTCCTTGCACTATCCC
CCCCAATGCTCTCCCAGGGCGACTGGAATATGGTGCAGCGGGGCACTGGA
CCCGAGCAGCCTTCCTCCTCCGACGAATCGCTTTGGCATGACCCGCTCGC
CGCCCAAGCCATGTCTGGGGCACTATTGCTGAGCCATGAGGCGCGCAGCG
GCGGTGGCGGTGGCGGCGGCGGCGGCGGCAGTGGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3412002..3412588-

>mRNA_S-ischiensis_contig9.20803.1 ID=mRNA_S-ischiensis_contig9.20803.1|Name=mRNA_S-ischiensis_contig9.20803.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig9:3412002..3412588- (Schizocladia ischiensis KU_0333)
AGCGGGCCGACCGTGGTGATTGAGGCGCCCGGGCCGAACCGCTTGATGCT
GGAGGGGGGGTCGGTGGCTGAGCCCAATACTATCACGCTCGGAGGGCCCG
AGAGCGGGCCGACCGTGGTGATTGAGGCGCCCGGGCCGAACCGCTTGATG
CTGGAGGGGGGGTCGGTGGCTGAGCCCAATACTATCACGCTCGGAGGGCC
CGAGGGCGACTGGAATATGGTGCAGCGGGGCACTGGACCCGAGCAGCCTT
CCTCCTCCGACGAATCGCTTTGGCATGACCCGCTCGCCGCCCAAGCCATG
TCTGGGGCACTATTGCTGAGCCATGAGGCGCGCAGCGGCGGTGGCGGTGG
CGGCGGCGGCGGCGGCAGTGGCGGCGACTGGAATATGGTGCAGCGGGGCA
CTGGACCCGAGCAGCCTTCCTCCTCCGACGAATCGCTTTGGCATGACCCG
CTCGCCGCCCAAGCCATGTCTGGGGCACTATTGCTGAGCCATGAGGCGCG
CAGCGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCAGTGGC
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