mRNA_S-ischiensis_contig9.20779.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20779.1
Unique NamemRNA_S-ischiensis_contig9.20779.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3157502..3158864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.1396382-CDS-S-ischiensis_contig9:3157501..31575901622817369.1396382-CDS-S-ischiensis_contig9:3157501..3157590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3157502..3157590 +
1695741062.0894501-CDS-S-ischiensis_contig9:3157501..31575901695741062.0894501-CDS-S-ischiensis_contig9:3157501..3157590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3157502..3157590 +
1622817369.1515315-CDS-S-ischiensis_contig9:3158721..31588631622817369.1515315-CDS-S-ischiensis_contig9:3158721..3158863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3158722..3158863 +
1695741062.1004376-CDS-S-ischiensis_contig9:3158721..31588631695741062.1004376-CDS-S-ischiensis_contig9:3158721..3158863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3158722..3158863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20779.1prot_S-ischiensis_contig9.20779.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3157502..3158863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20779.1

>prot_S-ischiensis_contig9.20779.1 ID=prot_S-ischiensis_contig9.20779.1|Name=mRNA_S-ischiensis_contig9.20779.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
GGVGTAPGPGVGADGGRYSAVPARWSSCWRRRKQPQQECTGRCGCASSLK
PVHGPPEHASSPSRCREAGKGGGGWRR
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mRNA from alignment at S-ischiensis_contig9:3157502..3158864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20779.1 ID=mRNA_S-ischiensis_contig9.20779.1|Name=mRNA_S-ischiensis_contig9.20779.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1363bp|location=Sequence derived from alignment at S-ischiensis_contig9:3157502..3158864+ (Schizocladia ischiensis KU_0333)
GGAGGTGTTGGAACGGCTCCTGGCCCGGGAGTTGGCGCTGATGGAGGGCG
TTATTCGGCGGTGCCTGCCCGGTGGTCAAGCTGTTGGCGGTGGGTGCACG
GGGGGGTTGGGGAGGGCGGGCAGGCGGGGGCGCGGCCTTTCAGCACTCAG
AATGCCAAATAATCGCATTGGTTGTGGCAGTCTCGCTTGTGGGGAAAGCC
TGATCGATTGCGGGCATGCGGGGTGGTTGGGGGATGGGGGGGGGGCTTAC
GCACTGCCCACTCACTCGTTCGCTCGCTGCGGCGCTTTATCTGTACTGTC
GAGTAGGCATGTACTGTACTGTACTAGCTGTATGTGTACTGTACGAGTAC
AGTAGGCATGCACTGTACTGTACTCGAGCGGAAAAACAGTGCTCGTGGTG
CATACCCGGTACAATATACTCGAGCAAGTATACTTCTGGCACCACCACTG
TGCTGCTGCTACTGTACTCGACAGTACTGTAGCACGAGTACCATATTGTT
TCCCCCAACTGTTCGCTTTTCTTTTGCGGTAGGCAGCTCGTTGACCACGC
GCCCTTTCCCTCGACCCACAGTCTGAGCGGTGCCGCGTCTCACAGCATAC
AGTGTTTTTCTATGTCCTCCGGCGGCGGCGCCGGCGGCGCCCCCCCCCGC
CCAGTGATGGAATACCGATCAGTACTCGAGTACGCGTGGATAGTTAACGG
GCTCGACTGATTTTGTGGGTGGCGCTACAACTACTTGGATCTAGTGTGGG
TCAAACTGTCGAATATCGACTATTGGTAGATACGTAGATCATTGTGTGTA
CTCATGGCGGATGGGGATCCCACCCTGTGCTTGCCACCGACTCGGGCCAG
TATACTCCGTGCTGACCCTGGTCGGTCCCCATACGGGGTACCTTGCGGCC
ATTGGCCACGCAGCCCTACTACACCAGGCCGGAGCATCCCGGGTTTTCAC
CGGGCAGGCGGGCGCCGGTCCCGACTTTGCCATTAGGCCCGAGGCCGACA
AGCCGGTACGGCCCATGATTTTTTCAATTTTGCACGTGTTTCTCGAGGCG
TCCATTTTTCGCGGAAAATCGACCCCACACTGGGAATCGTACTCGCGACC
TTGGGCTCACCGTCGGTAGACCACTCGCCTAGACGAGCGCATACATAGAT
CAGTGCTGTCAATAAACACGTTGATCTGCTTAAGATATTCCGTCACTGCC
CTCCTCCGTCCCCATCCCAGGCGGCGGAAGCAGCCACAACAGGAATGCAC
TGGCAGATGCGGCTGCGCAAGCTCTCTCAAACCTGTCCACGGTCCTCCGG
AACACGCCTCCAGCCCTTCGCGCTGCCGAGAGGCTGGCAAGGGCGGGGGA
GGGTGGCGACGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3157502..3158864+

>mRNA_S-ischiensis_contig9.20779.1 ID=mRNA_S-ischiensis_contig9.20779.1|Name=mRNA_S-ischiensis_contig9.20779.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig9:3157502..3158864+ (Schizocladia ischiensis KU_0333)
GGAGGTGTTGGAACGGCTCCTGGCCCGGGAGTTGGCGCTGATGGAGGGCG
TTATTCGGCGGTGCCTGCCCGGTGGTCAAGCTGTTGGCGGGAGGTGTTGG
AACGGCTCCTGGCCCGGGAGTTGGCGCTGATGGAGGGCGTTATTCGGCGG
TGCCTGCCCGGTGGTCAAGCTGTTGGCGGCGGCGGAAGCAGCCACAACAG
GAATGCACTGGCAGATGCGGCTGCGCAAGCTCTCTCAAACCTGTCCACGG
TCCTCCGGAACACGCCTCCAGCCCTTCGCGCTGCCGAGAGGCTGGCAAGG
GCGGGGGAGGGTGGCGACGGGCGGCGGAAGCAGCCACAACAGGAATGCAC
TGGCAGATGCGGCTGCGCAAGCTCTCTCAAACCTGTCCACGGTCCTCCGG
AACACGCCTCCAGCCCTTCGCGCTGCCGAGAGGCTGGCAAGGGCGGGGGA
GGGTGGCGACGG
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