mRNA_S-ischiensis_contig11.1970.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1970.1
Unique NamemRNA_S-ischiensis_contig11.1970.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:131030..132816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1787
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1970.1prot_S-ischiensis_contig11.1970.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 131681..132712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.656375-UTR-S-ischiensis_contig11:131029..1316801622815581.656375-UTR-S-ischiensis_contig11:131029..131680Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 131030..131680 +
1695739783.8532894-UTR-S-ischiensis_contig11:131029..1316801695739783.8532894-UTR-S-ischiensis_contig11:131029..131680Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 131030..131680 +
1622815581.6900978-UTR-S-ischiensis_contig11:132712..1328161622815581.6900978-UTR-S-ischiensis_contig11:132712..132816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 132713..132816 +
1695739783.871514-UTR-S-ischiensis_contig11:132712..1328161695739783.871514-UTR-S-ischiensis_contig11:132712..132816Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 132713..132816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.6753783-CDS-S-ischiensis_contig11:131680..1327121622815581.6753783-CDS-S-ischiensis_contig11:131680..132712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 131681..132712 +
1695739783.8633535-CDS-S-ischiensis_contig11:131680..1327121695739783.8633535-CDS-S-ischiensis_contig11:131680..132712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 131681..132712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1970.1

>prot_S-ischiensis_contig11.1970.1 ID=prot_S-ischiensis_contig11.1970.1|Name=mRNA_S-ischiensis_contig11.1970.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=344bp
MLYVLMYFGDTLPPADTSARGRPQHAAATQAPHSPARLTLPLGRLLVHRK
TWDPPHAHTNHDNLEYARSDEVSRLGACPGPERSSYMPNTPNDTWKYMPN
TPVSLPVWGKAKPRPDASHPLEARADRQKKSKSTRLPRARWWQTGTQSGG
GTSDSPPPSTAHIIVYHPRQSSPRPPRFGASAEAERTGPDCATGRVRALA
LAPAPAPAPHALRRGNRSAHPTHQPYPPLHTRPLHGIGRRVYGLVLYRPA
LASGEPTSRAAGRRRCFESRASSNSEAQARLHDSASGVAYPTPAKTSCVF
TLLRRQYRSTVQLAHECCSAWCLAADTNENLPGACAQHIPQVA*
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mRNA from alignment at S-ischiensis_contig11:131030..132816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1970.1 ID=mRNA_S-ischiensis_contig11.1970.1|Name=mRNA_S-ischiensis_contig11.1970.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1787bp|location=Sequence derived from alignment at S-ischiensis_contig11:131030..132816+ (Schizocladia ischiensis KU_0333)
AAGTAATTGAGTTCTTTATAATAGTGACGTGGCCAGCACCTCGCCCTGTT
CCTTTTCTGTTATAATACATACTCGTACTTGGAAGTACTTGAGGAGCACG
GTACAATTCGTTGTCGCCGGAGAGTTAAATACAGTAAGTCGCACGTCTTG
AAGCACGTCTGCTGTGCATGATTGCCCCATTCATGTGCACAAACTTGCCA
GCACCCGAGCAAGTGCGTACTTCAATTACATTTCCTGGCGAGGGGGCCCC
GGTTCTCAAGCGGTGGAACGTCCAGTGGAAGGAGCACAACAAAAGCACAA
GAACGAGATGGACCAATTGGCCGCCAAAAAGACTCTACGGGCACAGCGGC
GGCGGAAGCAGCAGCAACAGCAGTAGAGCTCTACTCCTGTACTGTAGTAG
TACCTCGAAGTAGTATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGA
CCGTTGACCACGCGCCTCGGTCGAGACGGAGCAGGTACTTCCAGTAGTGG
CCGCAAGGAACTTGTTCGCTCCAGGGACTCTCAAGCTCCGGCGGAGTTCA
AAGACGACTGGCCGTCCTCTCGTTCACCTCAAAAGAAAGGTGACAACCAC
CGAGTACAGCGGTAGCCAGCGCGGGCCTCTTTGGCTCCCTCGACGAAAGC
AATGTTGTATGTACTTATGTACTTTGGTGATACGCTACCGCCCGCAGACA
CAAGCGCGCGAGGTCGCCCACAGCACGCGGCGGCAACACAGGCGCCTCAC
TCACCAGCGCGCCTCACGTTGCCACTGGGGAGACTACTCGTACACCGGAA
AACATGGGATCCTCCACACGCGCACACAAATCACGATAACCTGGAGTACG
CACGTTCGGACGAGGTTTCTCGTCTCGGTGCATGCCCTGGACCCGAACGA
TCCTCATACATGCCAAATACACCAAATGATACCTGGAAGTACATGCCAAA
TACACCAGTGTCGCTGCCAGTTTGGGGCAAGGCCAAGCCAAGGCCGGACG
CCTCCCATCCCCTGGAGGCGAGAGCGGACAGGCAAAAAAAGTCCAAATCA
ACACGCCTGCCACGAGCGCGCTGGTGGCAGACAGGAACACAGAGCGGCGG
TGGCACTTCCGACTCCCCACCGCCATCCACAGCACATATCATTGTATACC
ACCCCCGGCAGTCTAGTCCACGCCCGCCCCGCTTCGGCGCTTCAGCAGAA
GCAGAGAGGACGGGCCCAGACTGTGCCACAGGGCGGGTCCGTGCTCTGGC
CCTGGCGCCGGCTCCGGCCCCGGCACCACATGCTTTGCGCCGGGGCAATC
GTAGCGCCCACCCGACCCACCAACCCTATCCCCCCCTACACACGCGCCCC
CTCCACGGGATCGGAAGGCGCGTCTATGGACTTGTGTTGTACCGTCCCGC
CCTTGCCAGCGGCGAACCGACCAGCCGCGCGGCTGGCCGGCGCCGCTGTT
TCGAATCGAGAGCCTCGTCAAATAGTGAGGCGCAGGCGCGTCTCCACGAC
TCCGCCAGCGGTGTCGCCTACCCTACCCCTGCAAAAACCTCATGTGTTTT
TACTCTGTTGCGCAGACAGTACCGTAGTACAGTACAGCTAGCACACGAGT
GCTGCAGTGCTTGGTGTCTTGCCGCAGACACAAATGAAAACTTGCCGGGC
GCATGTGCACAACATATACCACAAGTAGCATGAATCAGTAAGTACATATA
CATTGAATACACAAGGTGTGCGCGCCGGCCGGCCCTACTGCCGGCACGGC
GCCGGGGACTCAGGCTGCCGCTTGCCGAGGGGGTCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:131030..132816+

>mRNA_S-ischiensis_contig11.1970.1 ID=mRNA_S-ischiensis_contig11.1970.1|Name=mRNA_S-ischiensis_contig11.1970.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2064bp|location=Sequence derived from alignment at S-ischiensis_contig11:131030..132816+ (Schizocladia ischiensis KU_0333)
ATGTTGTATGTACTTATGTACTTTGGTGATACGCTACCGCCCGCAGACAC
AAGCGCGCGAGGTCGCCCACAGCACGCGGCGGCAACACAGGCGCCTCACT
CACCAGCGCGCCTCACGTTGCCACTGGGGAGACTACTCGTACACCGGAAA
ACATGGGATCCTCCACACGCGCACACAAATCACGATAACCTGGAGTACGC
ACGTTCGGACGAGGTTTCTCGTCTCGGTGCATGCCCTGGACCCGAACGAT
CCTCATACATGCCAAATACACCAAATGATACCTGGAAGTACATGCCAAAT
ACACCAGTGTCGCTGCCAGTTTGGGGCAAGGCCAAGCCAAGGCCGGACGC
CTCCCATCCCCTGGAGGCGAGAGCGGACAGGCAAAAAAAGTCCAAATCAA
CACGCCTGCCACGAGCGCGCTGGTGGCAGACAGGAACACAGAGCGGCGGT
GGCACTTCCGACTCCCCACCGCCATCCACAGCACATATCATTGTATACCA
CCCCCGGCAGTCTAGTCCACGCCCGCCCCGCTTCGGCGCTTCAGCAGAAG
CAGAGAGGACGGGCCCAGACTGTGCCACAGGGCGGGTCCGTGCTCTGGCC
CTGGCGCCGGCTCCGGCCCCGGCACCACATGCTTTGCGCCGGGGCAATCG
TAGCGCCCACCCGACCCACCAACCCTATCCCCCCCTACACACGCGCCCCC
TCCACGGGATCGGAAGGCGCGTCTATGGACTTGTGTTGTACCGTCCCGCC
CTTGCCAGCGGCGAACCGACCAGCCGCGCGGCTGGCCGGCGCCGCTGTTT
CGAATCGAGAGCCTCGTCAAATAGTGAGGCGCAGGCGCGTCTCCACGACT
CCGCCAGCGGTGTCGCCTACCCTACCCCTGCAAAAACCTCATGTGTTTTT
ACTCTGTTGCGCAGACAGTACCGTAGTACAGTACAGCTAGCACACGAGTG
CTGCAGTGCTTGGTGTCTTGCCGCAGACACAAATGAAAACTTGCCGGGCG
CATGTGCACAACATATACCACAAGTAGCATGAATGTTGTATGTACTTATG
TACTTTGGTGATACGCTACCGCCCGCAGACACAAGCGCGCGAGGTCGCCC
ACAGCACGCGGCGGCAACACAGGCGCCTCACTCACCAGCGCGCCTCACGT
TGCCACTGGGGAGACTACTCGTACACCGGAAAACATGGGATCCTCCACAC
GCGCACACAAATCACGATAACCTGGAGTACGCACGTTCGGACGAGGTTTC
TCGTCTCGGTGCATGCCCTGGACCCGAACGATCCTCATACATGCCAAATA
CACCAAATGATACCTGGAAGTACATGCCAAATACACCAGTGTCGCTGCCA
GTTTGGGGCAAGGCCAAGCCAAGGCCGGACGCCTCCCATCCCCTGGAGGC
GAGAGCGGACAGGCAAAAAAAGTCCAAATCAACACGCCTGCCACGAGCGC
GCTGGTGGCAGACAGGAACACAGAGCGGCGGTGGCACTTCCGACTCCCCA
CCGCCATCCACAGCACATATCATTGTATACCACCCCCGGCAGTCTAGTCC
ACGCCCGCCCCGCTTCGGCGCTTCAGCAGAAGCAGAGAGGACGGGCCCAG
ACTGTGCCACAGGGCGGGTCCGTGCTCTGGCCCTGGCGCCGGCTCCGGCC
CCGGCACCACATGCTTTGCGCCGGGGCAATCGTAGCGCCCACCCGACCCA
CCAACCCTATCCCCCCCTACACACGCGCCCCCTCCACGGGATCGGAAGGC
GCGTCTATGGACTTGTGTTGTACCGTCCCGCCCTTGCCAGCGGCGAACCG
ACCAGCCGCGCGGCTGGCCGGCGCCGCTGTTTCGAATCGAGAGCCTCGTC
AAATAGTGAGGCGCAGGCGCGTCTCCACGACTCCGCCAGCGGTGTCGCCT
ACCCTACCCCTGCAAAAACCTCATGTGTTTTTACTCTGTTGCGCAGACAG
TACCGTAGTACAGTACAGCTAGCACACGAGTGCTGCAGTGCTTGGTGTCT
TGCCGCAGACACAAATGAAAACTTGCCGGGCGCATGTGCACAACATATAC
CACAAGTAGCATGA
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