mRNA_S-ischiensis_contig9.20702.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20702.1
Unique NamemRNA_S-ischiensis_contig9.20702.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20702.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.570e-7
Identity = 42/119 (35.29%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    7 REAEALLNRLCVAMVKMVVSEIHHAQNSPYTASLNADKEVNNRKGDKDLDNVLPVNHLTWPELARQAIIVQLADAMKETGDSRPGPDVVRGWARGPDRQPGRKAEQADLHLLRQRVERR 363
            +EA+ALL+ +C+++V+++  ++H    SP       D++ +  +    +  VL VN +TWPELARQ I+  LA       D+      V GW RG +R     A +    LLRQRVE+R
Sbjct: 1050 KEAQALLDGVCMSIVRVLSIDLHTVLGSP------CDQQKDKERESVAMSEVLVVNQMTWPELARQCIVANLAKEYLHMPDAE-----VTGWVRGAERHW--TAARPYNILLRQRVEQR 1155
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE1.570e-735.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2712873..2714772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size932
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.1199956-CDS-S-ischiensis_contig9:2712872..27130911622817368.1199956-CDS-S-ischiensis_contig9:2712872..2713091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2712873..2713091 +
1695741061.317576-CDS-S-ischiensis_contig9:2712872..27130911695741061.317576-CDS-S-ischiensis_contig9:2712872..2713091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2712873..2713091 +
1622817368.1309607-CDS-S-ischiensis_contig9:2714060..27147711622817368.1309607-CDS-S-ischiensis_contig9:2714060..2714771Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2714061..2714771 +
1695741061.3287358-CDS-S-ischiensis_contig9:2714060..27147711695741061.3287358-CDS-S-ischiensis_contig9:2714060..2714771Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2714061..2714771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20702.1prot_S-ischiensis_contig9.20702.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2712873..2714771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20702.1

>prot_S-ischiensis_contig9.20702.1 ID=prot_S-ischiensis_contig9.20702.1|Name=mRNA_S-ischiensis_contig9.20702.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=310bp
PIREAEALLNRLCVAMVKMVVSEIHHAQNSPYTASLNADKEVNNRKGDKD
LDNVLPVNHLTWPELARQAIIVQLADAMKETGDSRPGPDVVRGWARGPDR
QPGRKAEQADLHLLRQRVERRWRTDDDDDEQAFATTPPAALQETAFPEQQ
QRSAAATAAWGGGAASPKAEVPEGEAGGGGDGASAQAGCRGVAGIVPPPA
VSATAGTDALACQVAASHAEAFVAGAESSTAGTHALACQVAASRVEAFLA
QAESAVCSGEASVSGAAAGAVAVAPAEGSGVGVDADGEGVTPPMVEGALA
AVAVDGAAGT
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mRNA from alignment at S-ischiensis_contig9:2712873..2714772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20702.1 ID=mRNA_S-ischiensis_contig9.20702.1|Name=mRNA_S-ischiensis_contig9.20702.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1900bp|location=Sequence derived from alignment at S-ischiensis_contig9:2712873..2714772+ (Schizocladia ischiensis KU_0333)
CCCATCCGCGAGGCGGAAGCGCTGCTGAACCGGCTGTGCGTGGCCATGGT
GAAGATGGTGGTGTCGGAGATCCACCATGCGCAGAACAGCCCGTACACGG
CGAGCCTGAACGCGGATAAGGAGGTGAACAACCGCAAGGGGGACAAGGAC
CTGGACAATGTGCTGCCCGTGAACCATTTGACGTGGCCCGAGCTGGCGCG
GCAGGCCATCATCGTACAGGCGAGTTTTTGTTTCGTGTGTGTGTGTGTGT
GTGTCGCGAGGGTTGGGCAGGCGTGCTGTTGATGCCGCTTCAGTAGTGGA
TTTGTTGCCATCATCGCGCAGGCGAGTTTTGTGTGTGTGTGTGTGTGTGT
TTGCGTGCGTGTGTGCTACGAGGGTCAGGCAGGCGTGCTGGTGTTGCTTC
AGTAAGTAGTGGATTTGTTGATGAACGAAGAGCTCGAGCGTGTCCGCCGG
TCGAGTGTGTCGAGAGACCAAGCGCGCCTGTCTTGCCGCTACAGCTGTGG
ATCATGGGAGTGCATCCATCCATCCGTACTGCTTTGTCACCGCGGTGTGT
TTGGAGTGAATGCGAGCGATTTGTCCCTCCTCGCCCGACAACAGTCGCGG
GACTCTTGTCTGCTCCGTCCGTGGATACGTCGTGCTTGCTTGCTTTCTTT
TAAAGGGAATCGACGTCTGAGAGCAGCCAGTCCCAGCAAAGGGCGTCGCC
GGGCTCCTTCCCCAACGGCACGTAGGGTCTACCACCGCGTGGGATGCCCT
GGGGGGGGCGATATTGGCGGCTTGCTGCTGATAGCGGCATGTGCACGTGA
TGCGTGTCACCCCGCTACCTCCCCCCACCACCACCTTCATTGTGAGATGC
CCCAGTGGCCGTCATTGGTTCAAAGCAAAGTTACACTCAAGTACACAAGC
AACTCTCTGCTCGGTCTCGATCGAGGCGCGTGGTCAATGGTCTCGGGACT
ATGGCAAGCCCAACGCGAGTACACACACACATATATATACACAAGCAACT
TGTATATGTGTGTACTCACATCTCTGTGCATGCCCTGGACCTGAACGATC
CTCGTCTTTGCTCCTTCTCGTAGATATATACTGTATATATACATGTACTC
ACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCACCTCGTGCGA
GACTGTACACAAGCAACTCATGATTCCCCCCGCCTCAGCTCGCCGATGCG
ATGAAGGAGACCGGGGACAGCCGCCCGGGGCCCGACGTGGTCCGCGGCTG
GGCCCGCGGCCCTGACCGGCAGCCGGGCCGCAAGGCCGAGCAGGCAGACC
TGCACCTCCTCCGCCAGAGGGTGGAGCGCCGCTGGCGCACGGACGACGAT
GACGACGAACAGGCCTTCGCGACAACGCCTCCCGCCGCGCTCCAGGAAAC
CGCGTTTCCTGAGCAGCAGCAGCGGTCCGCAGCGGCGACGGCGGCGTGGG
GGGGGGGCGCGGCGTCTCCCAAGGCTGAGGTGCCTGAAGGTGAAGCAGGC
GGAGGCGGGGATGGGGCTAGTGCACAGGCAGGGTGCCGTGGGGTGGCGGG
TATTGTACCCCCGCCGGCCGTGTCGGCGACGGCCGGTACTGATGCTTTAG
CGTGTCAGGTTGCTGCCAGTCACGCTGAGGCGTTTGTGGCGGGGGCTGAA
TCGTCCACGGCCGGTACTCATGCCCTAGCGTGTCAGGTTGCTGCCAGTCG
CGTTGAGGCGTTTCTGGCGCAGGCTGAATCGGCCGTCTGCAGCGGCGAGG
CTTCGGTTTCCGGGGCGGCGGCGGGGGCGGTGGCCGTGGCGCCCGCCGAA
GGGAGCGGCGTAGGCGTGGATGCGGATGGCGAGGGCGTGACGCCTCCCAT
GGTGGAAGGAGCCCTTGCTGCTGTGGCAGTCGATGGTGCGGCGGGGACGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2712873..2714772+

>mRNA_S-ischiensis_contig9.20702.1 ID=mRNA_S-ischiensis_contig9.20702.1|Name=mRNA_S-ischiensis_contig9.20702.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1860bp|location=Sequence derived from alignment at S-ischiensis_contig9:2712873..2714772+ (Schizocladia ischiensis KU_0333)
CCCATCCGCGAGGCGGAAGCGCTGCTGAACCGGCTGTGCGTGGCCATGGT
GAAGATGGTGGTGTCGGAGATCCACCATGCGCAGAACAGCCCGTACACGG
CGAGCCTGAACGCGGATAAGGAGGTGAACAACCGCAAGGGGGACAAGGAC
CTGGACAATGTGCTGCCCGTGAACCATTTGACGTGGCCCGAGCTGGCGCG
GCAGGCCATCATCGTACAGCCCATCCGCGAGGCGGAAGCGCTGCTGAACC
GGCTGTGCGTGGCCATGGTGAAGATGGTGGTGTCGGAGATCCACCATGCG
CAGAACAGCCCGTACACGGCGAGCCTGAACGCGGATAAGGAGGTGAACAA
CCGCAAGGGGGACAAGGACCTGGACAATGTGCTGCCCGTGAACCATTTGA
CGTGGCCCGAGCTGGCGCGGCAGGCCATCATCGTACAGCTCGCCGATGCG
ATGAAGGAGACCGGGGACAGCCGCCCGGGGCCCGACGTGGTCCGCGGCTG
GGCCCGCGGCCCTGACCGGCAGCCGGGCCGCAAGGCCGAGCAGGCAGACC
TGCACCTCCTCCGCCAGAGGGTGGAGCGCCGCTGGCGCACGGACGACGAT
GACGACGAACAGGCCTTCGCGACAACGCCTCCCGCCGCGCTCCAGGAAAC
CGCGTTTCCTGAGCAGCAGCAGCGGTCCGCAGCGGCGACGGCGGCGTGGG
GGGGGGGCGCGGCGTCTCCCAAGGCTGAGGTGCCTGAAGGTGAAGCAGGC
GGAGGCGGGGATGGGGCTAGTGCACAGGCAGGGTGCCGTGGGGTGGCGGG
TATTGTACCCCCGCCGGCCGTGTCGGCGACGGCCGGTACTGATGCTTTAG
CGTGTCAGGTTGCTGCCAGTCACGCTGAGGCGTTTGTGGCGGGGGCTGAA
TCGTCCACGGCCGGTACTCATGCCCTAGCGTGTCAGGTTGCTGCCAGTCG
CGTTGAGGCGTTTCTGGCGCAGGCTGAATCGGCCGTCTGCAGCGGCGAGG
CTTCGGTTTCCGGGGCGGCGGCGGGGGCGGTGGCCGTGGCGCCCGCCGAA
GGGAGCGGCGTAGGCGTGGATGCGGATGGCGAGGGCGTGACGCCTCCCAT
GGTGGAAGGAGCCCTTGCTGCTGTGGCAGTCGATGGTGCGGCGGGGACGC
TCGCCGATGCGATGAAGGAGACCGGGGACAGCCGCCCGGGGCCCGACGTG
GTCCGCGGCTGGGCCCGCGGCCCTGACCGGCAGCCGGGCCGCAAGGCCGA
GCAGGCAGACCTGCACCTCCTCCGCCAGAGGGTGGAGCGCCGCTGGCGCA
CGGACGACGATGACGACGAACAGGCCTTCGCGACAACGCCTCCCGCCGCG
CTCCAGGAAACCGCGTTTCCTGAGCAGCAGCAGCGGTCCGCAGCGGCGAC
GGCGGCGTGGGGGGGGGGCGCGGCGTCTCCCAAGGCTGAGGTGCCTGAAG
GTGAAGCAGGCGGAGGCGGGGATGGGGCTAGTGCACAGGCAGGGTGCCGT
GGGGTGGCGGGTATTGTACCCCCGCCGGCCGTGTCGGCGACGGCCGGTAC
TGATGCTTTAGCGTGTCAGGTTGCTGCCAGTCACGCTGAGGCGTTTGTGG
CGGGGGCTGAATCGTCCACGGCCGGTACTCATGCCCTAGCGTGTCAGGTT
GCTGCCAGTCGCGTTGAGGCGTTTCTGGCGCAGGCTGAATCGGCCGTCTG
CAGCGGCGAGGCTTCGGTTTCCGGGGCGGCGGCGGGGGCGGTGGCCGTGG
CGCCCGCCGAAGGGAGCGGCGTAGGCGTGGATGCGGATGGCGAGGGCGTG
ACGCCTCCCATGGTGGAAGGAGCCCTTGCTGCTGTGGCAGTCGATGGTGC
GGCGGGGACG
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