mRNA_S-ischiensis_contig9.20701.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20701.1
Unique NamemRNA_S-ischiensis_contig9.20701.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2710862..2711959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size447
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817368.0786052-CDS-S-ischiensis_contig9:2710861..27111161622817368.0786052-CDS-S-ischiensis_contig9:2710861..2711116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710862..2711116 +
1695741061.2934704-CDS-S-ischiensis_contig9:2710861..27111161695741061.2934704-CDS-S-ischiensis_contig9:2710861..2711116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2710862..2711116 +
1622817368.089688-CDS-S-ischiensis_contig9:2711768..27119571622817368.089688-CDS-S-ischiensis_contig9:2711768..2711957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2711769..2711957 +
1695741061.305836-CDS-S-ischiensis_contig9:2711768..27119571695741061.305836-CDS-S-ischiensis_contig9:2711768..2711957Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2711769..2711957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20701.1prot_S-ischiensis_contig9.20701.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2710862..2711957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20701.1

>prot_S-ischiensis_contig9.20701.1 ID=prot_S-ischiensis_contig9.20701.1|Name=mRNA_S-ischiensis_contig9.20701.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
RRRVGGRITQRQRRRRRGGLRHRRGHCCRPEASGQAFRCQEGVGCPGQGR
GRDEGGGEEAGSGLAAGDGVCAEGAEEGDHGDGVSIQDAAGGPVAARPRH
PGRLGTARVCRPAPRAVRSLRDGRGRQCPHGRSSRASDGGGRTAAAAA
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mRNA from alignment at S-ischiensis_contig9:2710862..2711959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20701.1 ID=mRNA_S-ischiensis_contig9.20701.1|Name=mRNA_S-ischiensis_contig9.20701.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1098bp|location=Sequence derived from alignment at S-ischiensis_contig9:2710862..2711959+ (Schizocladia ischiensis KU_0333)
AGGCGACGAGTCGGAGGAAGAATCACCCAACGGCAGCGGCGGCGGCGGCG
GGGGGGCCTCCGCCACCGCCGGGGCCACTGCTGCCGGCCGGAGGCGTCCG
GCCAGGCGTTCCGGTGCCAGGAAGGCGTCGGGTGCCCAGGCCAAGGCCGG
GGCCGGGACGAAGGCGGAGGCGAAGAGGCTGGAAGCGGCCTCGCAGCTGG
TGACGGGGTTTGTGCAGAGGGAGCGGAGGAAGGCGACCACGGCGACGGAG
TCTCAGTGAGTCGCCCTCCTGCCCGTAGTGCCGTCATCTTTTTGTCTTTT
ATGTGCCGCGTGGTTTTTTGCCATTCTCTCTGCTCGCCTCTCTCTCTATA
TACCTCTCTCTCTCTCCTATCTCTGTGCTCGCCACCCTCTCTCTATATAT
ACGTACAGTAGCACATATACTCGTTATCTCTATTCACACCTCTCTCTCTC
TCTCTTTGCGGCGTGGGCGTCGATTGGCTATGAGTTCTGTTTGTTTTGTC
GCTTTTTGGGGGAGAGGGGGGCTTTTTTTTTTTAGGCCCTCCGTACGTGA
GAGTGTTCTGAGCCCCGTGGAGGACTCCCGAGGACGCATCGCTTGAACCG
TGCTCGGCGACCACAAGCGTTTCACGGGGCGTTTGCTTCCAAGGGCGGCA
CCGGAAAAAAAGGCATCTGAGGAGAAGCACACTGTGCCCGCCGACCCACC
CCCCCGACGGCGGCCGCGACCGCAACGACAACGGCTCGAAAATGCCCAGG
GTTGGCACTTAGCTCTACGTAACCCCCAAGCGTTGCCCTTTTAGAGCTCT
AGGCCCTGGATTAGAGGTAATTAGGGGCAACTAGACCTAAACTGAAGGCT
ATTTAGGCCCTAGTTAACCTCTAAATTGAGTGCCAACCCTGAAAACGCCC
CCGGCAGATTCAAGATGCTGCGGGCGGCCCGGTCGCAGCCCGGCCACGGC
ACCCAGGAAGACTCGGAACTGCCCGGGTTTGCCGACCCGCCCCCCGAGCC
GTGCGCTCGCTCCGCGACGGCCGAGGACGCCAGTGCCCTCACGGCCGCAG
CTCCCGCGCCAGCGACGGGGGGGGAAGGACCGCTGCCGCCGCCGCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2710862..2711959+

>mRNA_S-ischiensis_contig9.20701.1 ID=mRNA_S-ischiensis_contig9.20701.1|Name=mRNA_S-ischiensis_contig9.20701.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig9:2710862..2711959+ (Schizocladia ischiensis KU_0333)
AGGCGACGAGTCGGAGGAAGAATCACCCAACGGCAGCGGCGGCGGCGGCG
GGGGGGCCTCCGCCACCGCCGGGGCCACTGCTGCCGGCCGGAGGCGTCCG
GCCAGGCGTTCCGGTGCCAGGAAGGCGTCGGGTGCCCAGGCCAAGGCCGG
GGCCGGGACGAAGGCGGAGGCGAAGAGGCTGGAAGCGGCCTCGCAGCTGG
TGACGGGGTTTGTGCAGAGGGAGCGGAGGAAGGCGACCACGGCGACGGAG
TCTCAAGGCGACGAGTCGGAGGAAGAATCACCCAACGGCAGCGGCGGCGG
CGGCGGGGGGGCCTCCGCCACCGCCGGGGCCACTGCTGCCGGCCGGAGGC
GTCCGGCCAGGCGTTCCGGTGCCAGGAAGGCGTCGGGTGCCCAGGCCAAG
GCCGGGGCCGGGACGAAGGCGGAGGCGAAGAGGCTGGAAGCGGCCTCGCA
GCTGGTGACGGGGTTTGTGCAGAGGGAGCGGAGGAAGGCGACCACGGCGA
CGGAGTCTCAATTCAAGATGCTGCGGGCGGCCCGGTCGCAGCCCGGCCAC
GGCACCCAGGAAGACTCGGAACTGCCCGGGTTTGCCGACCCGCCCCCCGA
GCCGTGCGCTCGCTCCGCGACGGCCGAGGACGCCAGTGCCCTCACGGCCG
CAGCTCCCGCGCCAGCGACGGGGGGGGAAGGACCGCTGCCGCCGCCGCCA
TTCAAGATGCTGCGGGCGGCCCGGTCGCAGCCCGGCCACGGCACCCAGGA
AGACTCGGAACTGCCCGGGTTTGCCGACCCGCCCCCCGAGCCGTGCGCTC
GCTCCGCGACGGCCGAGGACGCCAGTGCCCTCACGGCCGCAGCTCCCGCG
CCAGCGACGGGGGGGGAAGGACCGCTGCCGCCGCCGCC
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