mRNA_S-ischiensis_contig9.20655.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20655.1
Unique NamemRNA_S-ischiensis_contig9.20655.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2327567..2328854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.3706286-CDS-S-ischiensis_contig9:2327566..23276231622817367.3706286-CDS-S-ischiensis_contig9:2327566..2327623Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2327567..2327623 +
1695741060.880056-CDS-S-ischiensis_contig9:2327566..23276231695741060.880056-CDS-S-ischiensis_contig9:2327566..2327623Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2327567..2327623 +
1622817367.3837476-CDS-S-ischiensis_contig9:2328709..23288531622817367.3837476-CDS-S-ischiensis_contig9:2328709..2328853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2328710..2328853 +
1695741060.8946064-CDS-S-ischiensis_contig9:2328709..23288531695741060.8946064-CDS-S-ischiensis_contig9:2328709..2328853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2328710..2328853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20655.1prot_S-ischiensis_contig9.20655.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2327567..2328853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20655.1

>prot_S-ischiensis_contig9.20655.1 ID=prot_S-ischiensis_contig9.20655.1|Name=mRNA_S-ischiensis_contig9.20655.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
LASPPRSDLGTDQDTEEWQDARENPGDGWDDDGLEDIEPAAAADVTAAAP
TARRVTGMSLRGAGGGG
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mRNA from alignment at S-ischiensis_contig9:2327567..2328854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20655.1 ID=mRNA_S-ischiensis_contig9.20655.1|Name=mRNA_S-ischiensis_contig9.20655.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1288bp|location=Sequence derived from alignment at S-ischiensis_contig9:2327567..2328854+ (Schizocladia ischiensis KU_0333)
CTGGCGAGCCCTCCCCGCAGCGATCTGGGCACGGATCAGGACACGGAGGA
GTGGCAGGTGCGGCGGCAGTCAGGGCTGGTTTGATTTATATACTTCGGAG
TAAATTGTAACGAGGTACAATCGCACGTGTGCGCGATTGACTGTTCTCGT
AGTACGTGGAAGTTGTTTCATTTATGAATGGAATGCTATTATATTAAGTA
CTTCGAGGTAGTGATTATCACATCAAGGAACTAAGAACAAGGCAGGTGGG
GGGCGGGGGGGGGGAACAGTCAGGGTTGCTGGTTTATTTATCGGGGTGGG
GTGATGCTTCTACCTAGCACGCTGTGTTTCTGCCGGGAATTCATATATTT
GTAACGAGGTACAATGCAGGTACAAGGCACGGATCAGGACACGGAGGAGT
GGCAGGTGTGGCGGTCAGGGCTGGTTTATCGGGGTGGGGTAATGCTTCTA
CTTATGCGTGGTCCCCCCGCCCCCCACCCCTTCCCCGCCACACAGCCCAT
CAGCCCCTCCTCCGCCCGAAAGAAAAGGCAAACAAAACGGGAGGTATGTA
TGCCCGCATGCATGCCCAGCCCATGTGCCCGCTTTCAATGTTGGAGGATT
TCAATGCCTCCTTCCAATACCCCGCTACGACAGTCACGCATGCGGCAGGA
CCAAAGAGGAGGGCGAGTGAGCGGGGGCGAAAGCAACCGGAGCCAAGCCC
ACCGCGACTCCCTCCCTCACCATGTTCCCGGCTTCCACACCCCCTTGAAA
CCCTGCCACCGCCTCCTGGACGTGCCCGGGATCCCCCCCCGGGGGGCAGC
CAGCGGATGAAAGCAAAGAAACACGAAAACTGATACATGCCTTCCGCACC
ACATGCCCGCCTCCCACACCCCATTGAACCCCCCGCCGCGCGCCGCCAAA
CCGATACACACCTTCCGCACCACATACCCGCCTCCCACCCCCCATTGAAC
CCCCCCTCCACTCCCCGGCTGCCACTGCTTCCACCAAACCGATACATGCC
TTCCGCACCACATGCCCGCCTCCCACACCCCATTAACCCCCCCGGCCGCC
GCCGCCGCCGCCAAACCGATACACACCTTCCGCACCACATGCCCGCCTCC
CCCTCCCCCCACCCCCGGCCGCCGCCGCCACCGCCGCCGCCAGGACGCGC
GGGAAAACCCGGGCGATGGCTGGGATGACGACGGGCTCGAAGACATTGAG
CCAGCCGCAGCCGCTGATGTCACAGCCGCTGCCCCCACCGCTCGACGGGT
GACTGGCATGTCGCTGAGAGGCGCCGGAGGAGGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2327567..2328854+

>mRNA_S-ischiensis_contig9.20655.1 ID=mRNA_S-ischiensis_contig9.20655.1|Name=mRNA_S-ischiensis_contig9.20655.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig9:2327567..2328854+ (Schizocladia ischiensis KU_0333)
CTGGCGAGCCCTCCCCGCAGCGATCTGGGCACGGATCAGGACACGGAGGA
GTGGCAGCTGGCGAGCCCTCCCCGCAGCGATCTGGGCACGGATCAGGACA
CGGAGGAGTGGCAGGACGCGCGGGAAAACCCGGGCGATGGCTGGGATGAC
GACGGGCTCGAAGACATTGAGCCAGCCGCAGCCGCTGATGTCACAGCCGC
TGCCCCCACCGCTCGACGGGTGACTGGCATGTCGCTGAGAGGCGCCGGAG
GAGGAGGGGACGCGCGGGAAAACCCGGGCGATGGCTGGGATGACGACGGG
CTCGAAGACATTGAGCCAGCCGCAGCCGCTGATGTCACAGCCGCTGCCCC
CACCGCTCGACGGGTGACTGGCATGTCGCTGAGAGGCGCCGGAGGAGGAG
GG
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