mRNA_S-ischiensis_contig11.1961.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1961.1
Unique NamemRNA_S-ischiensis_contig11.1961.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:69774..70598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size826
Cds size825
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.5495408-CDS-S-ischiensis_contig11:69773..705981622815581.5495408-CDS-S-ischiensis_contig11:69773..70598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 69774..70598 +
1695739783.816156-CDS-S-ischiensis_contig11:69773..705981695739783.816156-CDS-S-ischiensis_contig11:69773..70598Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 69774..70598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1961.1prot_S-ischiensis_contig11.1961.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 69774..70598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1961.1

>prot_S-ischiensis_contig11.1961.1 ID=prot_S-ischiensis_contig11.1961.1|Name=mRNA_S-ischiensis_contig11.1961.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
EVASNESTPSNPAGRPPQAAPSGGPKQDAERASSSTGEDSAAASPFTAVA
AVDAVAATEKDVAAAAAGEAAAAETEGVSLGHVLDTGAVPAEEEAAREEA
REPAPSGSGTSSPAVQEMAVQDGGEVAASSAQANVGSGGAGGGGGGGAGV
HATRPAGKRSTPTDLYVPRPRRMASAAATAAAASTPPLTPTGLGSMVAVV
APAAPAAAEGDTDVGPGNAEARTAAVTAAMEAAVSTIAEGATQVVEAGPP
ASAPREGKAGAATAGHVLPGEQPCP
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mRNA from alignment at S-ischiensis_contig11:69774..70598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1961.1 ID=mRNA_S-ischiensis_contig11.1961.1|Name=mRNA_S-ischiensis_contig11.1961.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=825bp|location=Sequence derived from alignment at S-ischiensis_contig11:69774..70598+ (Schizocladia ischiensis KU_0333)
GAGGTTGCCAGCAATGAGAGCACCCCATCTAACCCCGCAGGGCGGCCTCC
CCAGGCGGCCCCGTCCGGTGGGCCCAAGCAGGACGCAGAACGAGCTTCTA
GCTCCACTGGCGAGGATTCTGCAGCTGCTTCCCCGTTTACGGCGGTAGCA
GCAGTGGATGCGGTTGCAGCTACAGAAAAGGATGTAGCAGCTGCAGCTGC
AGGCGAGGCTGCGGCCGCAGAAACAGAGGGGGTGTCCTTGGGGCACGTGC
TGGACACAGGCGCCGTGCCTGCGGAGGAGGAAGCGGCCAGGGAGGAAGCG
CGAGAACCAGCACCATCCGGGTCCGGCACATCATCCCCGGCGGTGCAGGA
GATGGCCGTGCAGGATGGAGGGGAGGTCGCGGCTTCCTCTGCTCAAGCCA
ATGTTGGCAGCGGGGGCGCGGGAGGGGGAGGAGGTGGCGGAGCTGGGGTG
CATGCCACTCGACCAGCCGGGAAGCGGTCGACGCCCACGGATCTTTACGT
CCCCCGGCCCCGGCGGATGGCGAGCGCTGCTGCCACTGCTGCTGCCGCCT
CCACCCCCCCCCTGACCCCTACTGGGCTGGGCAGCATGGTGGCGGTGGTT
GCGCCGGCGGCGCCGGCGGCTGCCGAGGGGGATACAGATGTGGGGCCGGG
GAACGCGGAGGCAAGGACGGCGGCGGTGACGGCGGCGATGGAGGCAGCAG
TGTCAACCATTGCCGAGGGAGCAACCCAAGTTGTGGAAGCAGGGCCCCCG
GCTTCAGCGCCACGTGAGGGCAAAGCAGGTGCAGCCACCGCTGGCCACGT
GCTTCCAGGGGAGCAGCCATGCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:69774..70598+

>mRNA_S-ischiensis_contig11.1961.1 ID=mRNA_S-ischiensis_contig11.1961.1|Name=mRNA_S-ischiensis_contig11.1961.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig11:69774..70598+ (Schizocladia ischiensis KU_0333)
GAGGTTGCCAGCAATGAGAGCACCCCATCTAACCCCGCAGGGCGGCCTCC
CCAGGCGGCCCCGTCCGGTGGGCCCAAGCAGGACGCAGAACGAGCTTCTA
GCTCCACTGGCGAGGATTCTGCAGCTGCTTCCCCGTTTACGGCGGTAGCA
GCAGTGGATGCGGTTGCAGCTACAGAAAAGGATGTAGCAGCTGCAGCTGC
AGGCGAGGCTGCGGCCGCAGAAACAGAGGGGGTGTCCTTGGGGCACGTGC
TGGACACAGGCGCCGTGCCTGCGGAGGAGGAAGCGGCCAGGGAGGAAGCG
CGAGAACCAGCACCATCCGGGTCCGGCACATCATCCCCGGCGGTGCAGGA
GATGGCCGTGCAGGATGGAGGGGAGGTCGCGGCTTCCTCTGCTCAAGCCA
ATGTTGGCAGCGGGGGCGCGGGAGGGGGAGGAGGTGGCGGAGCTGGGGTG
CATGCCACTCGACCAGCCGGGAAGCGGTCGACGCCCACGGATCTTTACGT
CCCCCGGCCCCGGCGGATGGCGAGCGCTGCTGCCACTGCTGCTGCCGCCT
CCACCCCCCCCCTGACCCCTACTGGGCTGGGCAGCATGGTGGCGGTGGTT
GCGCCGGCGGCGCCGGCGGCTGCCGAGGGGGATACAGATGTGGGGCCGGG
GAACGCGGAGGCAAGGACGGCGGCGGTGACGGCGGCGATGGAGGCAGCAG
TGTCAACCATTGCCGAGGGAGCAACCCAAGTTGTGGAAGCAGGGCCCCCG
GCTTCAGCGCCACGTGAGGGCAAAGCAGGTGCAGCCACCGCTGGCCACGT
GCTTCCAGGGGAGCAGCCATGCCCCGAGGTTGCCAGCAATGAGAGCACCC
CATCTAACCCCGCAGGGCGGCCTCCCCAGGCGGCCCCGTCCGGTGGGCCC
AAGCAGGACGCAGAACGAGCTTCTAGCTCCACTGGCGAGGATTCTGCAGC
TGCTTCCCCGTTTACGGCGGTAGCAGCAGTGGATGCGGTTGCAGCTACAG
AAAAGGATGTAGCAGCTGCAGCTGCAGGCGAGGCTGCGGCCGCAGAAACA
GAGGGGGTGTCCTTGGGGCACGTGCTGGACACAGGCGCCGTGCCTGCGGA
GGAGGAAGCGGCCAGGGAGGAAGCGCGAGAACCAGCACCATCCGGGTCCG
GCACATCATCCCCGGCGGTGCAGGAGATGGCCGTGCAGGATGGAGGGGAG
GTCGCGGCTTCCTCTGCTCAAGCCAATGTTGGCAGCGGGGGCGCGGGAGG
GGGAGGAGGTGGCGGAGCTGGGGTGCATGCCACTCGACCAGCCGGGAAGC
GGTCGACGCCCACGGATCTTTACGTCCCCCGGCCCCGGCGGATGGCGAGC
GCTGCTGCCACTGCTGCTGCCGCCTCCACCCCCCCCCTGACCCCTACTGG
GCTGGGCAGCATGGTGGCGGTGGTTGCGCCGGCGGCGCCGGCGGCTGCCG
AGGGGGATACAGATGTGGGGCCGGGGAACGCGGAGGCAAGGACGGCGGCG
GTGACGGCGGCGATGGAGGCAGCAGTGTCAACCATTGCCGAGGGAGCAAC
CCAAGTTGTGGAAGCAGGGCCCCCGGCTTCAGCGCCACGTGAGGGCAAAG
CAGGTGCAGCCACCGCTGGCCACGTGCTTCCAGGGGAGCAGCCATGCCCC
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