mRNA_S-ischiensis_contig9.20579.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20579.1
Unique NamemRNA_S-ischiensis_contig9.20579.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1587470..1588778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20579.1prot_S-ischiensis_contig9.20579.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1587533..1588778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.4303038-UTR-S-ischiensis_contig9:1587469..15875321622817366.4303038-UTR-S-ischiensis_contig9:1587469..1587532Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1587470..1587532 -
1695741060.220344-UTR-S-ischiensis_contig9:1587469..15875321695741060.220344-UTR-S-ischiensis_contig9:1587469..1587532Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1587470..1587532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.4423594-CDS-S-ischiensis_contig9:1587532..15877261622817366.4423594-CDS-S-ischiensis_contig9:1587532..1587726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1587533..1587726 -
1695741060.2394233-CDS-S-ischiensis_contig9:1587532..15877261695741060.2394233-CDS-S-ischiensis_contig9:1587532..1587726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1587533..1587726 -
1622817366.4532275-CDS-S-ischiensis_contig9:1588750..15887781622817366.4532275-CDS-S-ischiensis_contig9:1588750..1588778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1588751..1588778 -
1695741060.2526717-CDS-S-ischiensis_contig9:1588750..15887781695741060.2526717-CDS-S-ischiensis_contig9:1588750..1588778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1588751..1588778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20579.1

>prot_S-ischiensis_contig9.20579.1 ID=prot_S-ischiensis_contig9.20579.1|Name=mRNA_S-ischiensis_contig9.20579.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
GVGARGAGAGSGGAGGVEAEGGRSRAGCAASPASGGGSDGILVRRYISGS
TDFAGDTTTDLDLVWVKLSNVDY*
back to top

mRNA from alignment at S-ischiensis_contig9:1587470..1588778-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20579.1 ID=mRNA_S-ischiensis_contig9.20579.1|Name=mRNA_S-ischiensis_contig9.20579.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1309bp|location=Sequence derived from alignment at S-ischiensis_contig9:1587470..1588778- (Schizocladia ischiensis KU_0333)
GGCGTGGGCGCGAGAGGAGCTGGGGCGGGTGAGGCGCGGCATTTTTTTTT
GCTTGTTCCGGTGGGCAGGCAAGAGTGGCGGCGGCACGGAGTTTTTTTTT
TGCGGCGATGGTCTCGTGAGGTCGGATCGCACTGCGTAGGTACCCCTGGA
TGCGGCACGATGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGCTCT
CTTGTCAGCAATGTGATGGTGTATACCATGGTGTGTGATGTTCTGCCAAC
TGCAGTAAACTAGAGTTACCATGGCATCACATCGGAGGGCAAACCCGAAG
TTTTCTTTGCGTGGGGCTGCCGGCAAAGCGCGCAAGGTTGTGTCACAAGA
CAACCTGAATACTCGTACATATATATATGCTCGTACTACGTAGTATATAT
TTTGAGTGGTAGATAAGCGGCGAGTTCCAGACCCCGTGCCAAAAGGCTTG
TCCCGAAACAGGACTCAGCGAAGCCCTTCTTCCCCTCGCAGAACGAAAAG
AAATAGCAAATAAGAAGGAAAGGGTATATGTATACTAATAGTAAATCACA
TCGCATCGCATCACATCAGATCGCATCATGTTGCATGTGCTCTGGCGCCG
AGCAGCGGGCCACCCCGTCCTGTCCTTGCCACCGGCCACCGGCACAGTCA
CGAGTGTTGAATTGTGCTGCTTGGTGGGTCCCAGAAGTTATTGCAAGTAC
AACTGGCTTTCTGTAGAGTGCTGTACCTTCGATGTGATACCACACGACTT
GCCAGAGTGGCAATTCGTCCGGTGCATGTGATCACTGAAGGAATATCTAA
GCACATCAACCTATTTATCGACAGTACTGATATATAAATCTATCGATAGT
CGATATTCGATAGTTTGACCCACCCTAAATCCAAATAGTTGGTAACGCCG
CCCACAAAATCAGCCGAGCCCGATAGCTATCTACTGATCGATATTCCATC
ACTGAATCGGATCGGCCAATCGGACCACCCACCGGCCGCTTTCCACCAAT
CAAGCCGACTGACCGATGACCGATGCCTTTGGACCAATCGGATCGCCCAC
AGGTAGTGGAGGAGCTGGTGGAGTGGAAGCTGAGGGAGGGCGTTCCCGGG
CAGGATGTGCGGCTTCTCCTGCTTCAGGTGGGGGCAGTGATGGAATATTG
GTCAGGAGGTACATATCGGGCTCGACTGATTTTGCGGGTGACACTACTAC
CGACTTGGATTTAGTGTGGGTCAAGCTATCGAATGTCGACTATTGATAGA
TATATAGATCAATGCCGTCGATAAATAGGTTGGTTTGCTTAGATATTCCA
TCACTGGGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1587470..1588778-

>mRNA_S-ischiensis_contig9.20579.1 ID=mRNA_S-ischiensis_contig9.20579.1|Name=mRNA_S-ischiensis_contig9.20579.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig9:1587470..1588778- (Schizocladia ischiensis KU_0333)
GGCGTGGGCGCGAGAGGAGCTGGGGCGGGGCGTGGGCGCGAGAGGAGCTG
GGGCGGGTAGTGGAGGAGCTGGTGGAGTGGAAGCTGAGGGAGGGCGTTCC
CGGGCAGGATGTGCGGCTTCTCCTGCTTCAGGTGGGGGCAGTGATGGAAT
ATTGGTCAGGAGGTACATATCGGGCTCGACTGATTTTGCGGGTGACACTA
CTACCGACTTGGATTTAGTGTGGGTCAAGCTATCGAATGTCGACTATTGA
GTAGTGGAGGAGCTGGTGGAGTGGAAGCTGAGGGAGGGCGTTCCCGGGCA
GGATGTGCGGCTTCTCCTGCTTCAGGTGGGGGCAGTGATGGAATATTGGT
CAGGAGGTACATATCGGGCTCGACTGATTTTGCGGGTGACACTACTACCG
ACTTGGATTTAGTGTGGGTCAAGCTATCGAATGTCGACTATTGA
back to top