mRNA_S-ischiensis_contig11.1955.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1955.1
Unique NamemRNA_S-ischiensis_contig11.1955.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:9646..10271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size626
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.5096133-CDS-S-ischiensis_contig11:9645..102691622815581.5096133-CDS-S-ischiensis_contig11:9645..10269Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 9646..10269 +
1695739783.8051317-CDS-S-ischiensis_contig11:9645..102691695739783.8051317-CDS-S-ischiensis_contig11:9645..10269Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 9646..10269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1955.1prot_S-ischiensis_contig11.1955.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 9646..10269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1955.1

>prot_S-ischiensis_contig11.1955.1 ID=prot_S-ischiensis_contig11.1955.1|Name=mRNA_S-ischiensis_contig11.1955.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=208bp
RKLVGQQPASSGGGGLPTAAAAATGHSMPATVPAAAAAAVAGDRAADAAR
ELRRKRDAEWRCQLRERKELKRKRDAEGARQRWQLKKATLEEDRRRLAEE
AAGQQNGRALAQAAQPAPEEESSPRAGRDAREQHRRDGVVSRFARPAPAA
RETRASPHRGSPNQVWWNTARRGQEEEEKEEKKTAASALDAGFSDDDSPA
GPAGDYGP
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mRNA from alignment at S-ischiensis_contig11:9646..10271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1955.1 ID=mRNA_S-ischiensis_contig11.1955.1|Name=mRNA_S-ischiensis_contig11.1955.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=626bp|location=Sequence derived from alignment at S-ischiensis_contig11:9646..10271+ (Schizocladia ischiensis KU_0333)
CGCAAGCTGGTGGGACAACAGCCAGCATCGTCTGGCGGTGGCGGGCTCCC
CACCGCTGCCGCTGCAGCAACGGGGCACAGCATGCCCGCCACTGTCCCGG
CGGCGGCGGCGGCGGCGGTGGCAGGGGACAGGGCCGCAGACGCGGCCCGG
GAGCTTAGGCGCAAGAGGGACGCCGAGTGGAGATGCCAGCTACGGGAGCG
CAAAGAGCTTAAGCGCAAGAGGGACGCCGAGGGGGCACGCCAGCGCTGGC
AGCTAAAAAAAGCAACGCTGGAAGAGGATCGTCGGCGTTTGGCTGAGGAG
GCGGCCGGGCAACAGAACGGCCGGGCGCTGGCCCAGGCCGCCCAGCCGGC
GCCCGAGGAGGAGTCTTCTCCGAGGGCGGGGAGGGATGCCCGAGAGCAAC
ACAGGCGCGACGGGGTGGTGTCGAGGTTTGCTCGGCCGGCACCGGCTGCT
CGGGAGACCCGGGCGTCGCCCCACCGGGGGTCCCCCAACCAGGTGTGGTG
GAACACCGCCCGCCGGGGACAAGAAGAGGAGGAGAAGGAGGAGAAAAAAA
CTGCGGCATCTGCGCTGGACGCCGGGTTCAGCGATGACGACAGCCCCGCT
GGTCCAGCCGGGGACTACGGGCCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:9646..10271+

>mRNA_S-ischiensis_contig11.1955.1 ID=mRNA_S-ischiensis_contig11.1955.1|Name=mRNA_S-ischiensis_contig11.1955.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1248bp|location=Sequence derived from alignment at S-ischiensis_contig11:9646..10271+ (Schizocladia ischiensis KU_0333)
CGCAAGCTGGTGGGACAACAGCCAGCATCGTCTGGCGGTGGCGGGCTCCC
CACCGCTGCCGCTGCAGCAACGGGGCACAGCATGCCCGCCACTGTCCCGG
CGGCGGCGGCGGCGGCGGTGGCAGGGGACAGGGCCGCAGACGCGGCCCGG
GAGCTTAGGCGCAAGAGGGACGCCGAGTGGAGATGCCAGCTACGGGAGCG
CAAAGAGCTTAAGCGCAAGAGGGACGCCGAGGGGGCACGCCAGCGCTGGC
AGCTAAAAAAAGCAACGCTGGAAGAGGATCGTCGGCGTTTGGCTGAGGAG
GCGGCCGGGCAACAGAACGGCCGGGCGCTGGCCCAGGCCGCCCAGCCGGC
GCCCGAGGAGGAGTCTTCTCCGAGGGCGGGGAGGGATGCCCGAGAGCAAC
ACAGGCGCGACGGGGTGGTGTCGAGGTTTGCTCGGCCGGCACCGGCTGCT
CGGGAGACCCGGGCGTCGCCCCACCGGGGGTCCCCCAACCAGGTGTGGTG
GAACACCGCCCGCCGGGGACAAGAAGAGGAGGAGAAGGAGGAGAAAAAAA
CTGCGGCATCTGCGCTGGACGCCGGGTTCAGCGATGACGACAGCCCCGCT
GGTCCAGCCGGGGACTACGGGCCCCGCAAGCTGGTGGGACAACAGCCAGC
ATCGTCTGGCGGTGGCGGGCTCCCCACCGCTGCCGCTGCAGCAACGGGGC
ACAGCATGCCCGCCACTGTCCCGGCGGCGGCGGCGGCGGCGGTGGCAGGG
GACAGGGCCGCAGACGCGGCCCGGGAGCTTAGGCGCAAGAGGGACGCCGA
GTGGAGATGCCAGCTACGGGAGCGCAAAGAGCTTAAGCGCAAGAGGGACG
CCGAGGGGGCACGCCAGCGCTGGCAGCTAAAAAAAGCAACGCTGGAAGAG
GATCGTCGGCGTTTGGCTGAGGAGGCGGCCGGGCAACAGAACGGCCGGGC
GCTGGCCCAGGCCGCCCAGCCGGCGCCCGAGGAGGAGTCTTCTCCGAGGG
CGGGGAGGGATGCCCGAGAGCAACACAGGCGCGACGGGGTGGTGTCGAGG
TTTGCTCGGCCGGCACCGGCTGCTCGGGAGACCCGGGCGTCGCCCCACCG
GGGGTCCCCCAACCAGGTGTGGTGGAACACCGCCCGCCGGGGACAAGAAG
AGGAGGAGAAGGAGGAGAAAAAAACTGCGGCATCTGCGCTGGACGCCGGG
TTCAGCGATGACGACAGCCCCGCTGGTCCAGCCGGGGACTACGGGCCC
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