mRNA_S-ischiensis_contig9.20558.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20558.1
Unique NamemRNA_S-ischiensis_contig9.20558.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1379900..1382616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1868
Cds size1416
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20558.1prot_S-ischiensis_contig9.20558.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1379900..1382164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.7923896-CDS-S-ischiensis_contig9:1379899..13799651622817365.7923896-CDS-S-ischiensis_contig9:1379899..1379965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1379900..1379965 +
1695741059.8020802-CDS-S-ischiensis_contig9:1379899..13799651695741059.8020802-CDS-S-ischiensis_contig9:1379899..1379965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1379900..1379965 +
1622817365.805437-CDS-S-ischiensis_contig9:1380300..13810021622817365.805437-CDS-S-ischiensis_contig9:1380300..1381002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1380301..1381002 +
1695741059.8119462-CDS-S-ischiensis_contig9:1380300..13810021695741059.8119462-CDS-S-ischiensis_contig9:1380300..1381002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1380301..1381002 +
1622817365.8162162-CDS-S-ischiensis_contig9:1381516..13821641622817365.8162162-CDS-S-ischiensis_contig9:1381516..1382164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1381517..1382164 +
1695741059.829738-CDS-S-ischiensis_contig9:1381516..13821641695741059.829738-CDS-S-ischiensis_contig9:1381516..1382164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1381517..1382164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.8273776-UTR-S-ischiensis_contig9:1382164..13826161622817365.8273776-UTR-S-ischiensis_contig9:1382164..1382616Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1382165..1382616 +
1695741059.8426135-UTR-S-ischiensis_contig9:1382164..13826161695741059.8426135-UTR-S-ischiensis_contig9:1382164..1382616Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1382165..1382616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20558.1

>prot_S-ischiensis_contig9.20558.1 ID=prot_S-ischiensis_contig9.20558.1|Name=mRNA_S-ischiensis_contig9.20558.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=472bp
GAAAAASGGAEPKEQQGERVPAVFKPAAGSEAGPSGGPGPSDASGPASEE
SPAAAAATDTAEVVATPAAKPESAPAKPTPPGYPPLPSAAPKPLPFAPLA
APATVVAAPAAAPVGAASAAASAPAAAKATPSGYPPLASAAPTPFGRAPV
TSAATKPAAAAAAAKPAAAKATPSGYPPLPSSAPTPVWGAGAASAAAKPP
ASATPFAFAPAAAPAPAAKPPAAAKATPSGYPPLASSAPTPFGGAGAASA
AAKPPAHRRQPSHQQRPRPLRLRPLLRRLPQQSHPQQPRQPRRRAIHHFR
VRRPCPLGGQAQHRRQQSRQQRPRPLRLRPLPRRLPRRRRRWQREQSRPQ
QPRQRRRAIHRFRVRRPRPLGGQAQHRRQPSHQRRPHPLRLRPLPRRLPR
RRRQREPSHPQQPRQRHRAIHRFPVRRPRPLGGQAQHRRQPSHQQRPRLL
PSPPLLRRLPRRRRPPGRQRE*
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mRNA from alignment at S-ischiensis_contig9:1379900..1382616+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20558.1 ID=mRNA_S-ischiensis_contig9.20558.1|Name=mRNA_S-ischiensis_contig9.20558.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2717bp|location=Sequence derived from alignment at S-ischiensis_contig9:1379900..1382616+ (Schizocladia ischiensis KU_0333)
GGGGCGGCGGCAGCGGCGTCAGGGGGGGCGGAGCCTAAGGAGCAGCAGGG
AGAGAGGGTGCCAGCGGTAAGCGCCGGCCGGGGACGGCATGTTCGAGTAC
GGCTTTGTTTTGCTGCTCTGTATGCCCTGCGCGTGAAGGCGAGTGAAAGG
AAGGGCTTCGGGGGGTGGGGCCCTGAACTCGCGTAAGTAGGGACACCTCT
CCTTTACCACTCGCTTGTTTCTCTTCTAGCAAACCAAGAATGACTGAAGC
CATTCCGAAACCGCGGAGGGGAATCATCGTATTCGTATTTTTCCGGACGT
GAACGTACTTCGAAGTACGTCGCAGAGGCCATCATCCGTTCAAGACACCA
ATCGAAAGAGCCCCCTCCCCCCGCTCTCTCCCGTCCCCCCGCCACCATCA
GGTGTTCAAACCGGCCGCGGGATCAGAGGCGGGTCCTTCGGGTGGTCCTG
GTCCCTCCGACGCCTCTGGACCTGCTTCTGAGGAGAGTCCCGCCGCTGCT
GCCGCAACGGACACGGCAGAGGTGGTGGCAACACCGGCGGCAAAGCCAGA
ATCAGCACCAGCCAAGCCTACACCGCCGGGATATCCCCCCCTTCCCAGCG
CTGCCCCCAAGCCCTTGCCCTTTGCGCCACTGGCCGCGCCCGCAACGGTG
GTGGCGGCGCCGGCGGCGGCGCCGGTGGGGGCGGCTTCAGCAGCGGCTTC
GGCTCCAGCAGCTGCCAAGGCTACACCGTCGGGCTACCCGCCCCTCGCGA
GTGCTGCCCCCACGCCCTTTGGGCGGGCACCCGTGACGTCGGCGGCAACA
AAGCCAGCAGCAGCAGCAGCAGCGGCCAAGCCAGCCGCAGCCAAGGCAAC
ACCGTCGGGCTACCCGCCGCTGCCGAGTTCGGCGCCCACGCCCGTTTGGG
GGGCAGGCGCAGCATCGGCGGCAGCCAAACCGCCAGCATCGGCCACGCCC
TTTGCGTTTGCACCCGCTGCTGCGCCGGCTCCCGCGGCAAAGCCACCCGC
AGCAGCCAAGGCCACGCCATCGGGCTATCCGCCGCTCGCGAGCTCGGCGC
CCACGCCCTTTGGGGGGGCAGGCGCAGCATCGGCGGCAGCCAAGCCGCCA
GCAGCGGCCACGCCCTTTGCGTTTGCGCCCGCTGCTGCGCCGGCTCCCGC
AGCAAAGCCACCCGCAGCAGCCAAGGCAACCACGCCGTCGGGCTATCCAC
CACTTCCGAGTTCGGCGCCCATGCCCTTTGGGGGGGCAGGCACAGCATCG
GCGGCAGCAAAGCCGCCAGCAGCGGCCACGCCCTTTGCGTTTGCGCCCGC
TGCCGCGCCGGCTCCCGCGGCGGCGGCGGCGGTGGCAACGGGAGCAAAGC
CGCCCGCAGCAGCCAAGGCAACGCCGTCGGGCTATCCACCGCTTCCGAGT
TCGGCGCCCACGCCCTTTGGGGGGGCAGGTGCAGCATCGGCAGCAGCCAA
GCCACCAGCGGCGGCCACACCCTTTGCGTTTGCGCCCGCTGCCGCGCCGG
CTCCCGTGGCGGCGGCGGCAGCGGGAGCCAAGCCACCCGCAGCAGCCAAG
ACAACGCCATCGGGCTATCCACCGCTTCCCAGTTCGGCGCCCACGCCCTT
TGGGGGGGCAGGCGCAGCATCGGCGGCAGCCAAGCCACCAGCAGCGGCCA
CGCCCTTTGCGTTTGCGCCCGCTGCTGCGCCGGCTCCCGCAGCAAAGCCA
CCCGCAGCAGCCAAGGCAACCACGCCGTCGGGCTATCCACCACTTCCGAG
TTCGGCGCCCATGCCCTTTGGGGGGGCAGGCACAGCATCGGCGGCAGCAA
AGCCGCCAGCAGCGGCCACGCCCTTTGCGTTTGCGCCCGCTGcCGCGCCG
GCTCCCGCGGCGGCGGCGGCGGTGGCAGCGGGAGCAAAGCCGCCCGCAGC
AGCCAAGGCAACGCCGTCGGGCTATCCACCGCTTCCGAGTTCGGCGCCCA
CGCCCTTTGGGGGGGCAGGCGCAGCATCGGCGGCAGCCAAGCCACCAGCG
GCGGCCACACCCTTTGCGTTTGCGCCCGCTGCCGCGCCGGCTCCCGCGGC
GGCGGCGGCAGCGGGAGCCAAGCCACCCGCAGCAGCCAAGACAACGCCAT
CGGGCTATCCACCGCTTCCCAGTTCGGCGCCCACGCCCTTTGGGGGGGCA
GGCGCAGCATCGGCGGCAGCCAAGCCACCAGCAGCGGCCACGCCTTTTGC
CTTCGCCCCCGCTGCTGCGCCGGCTCCCGCGGCGGCGGCGGCCGCCGGGG
CGGCAGCGGGAGTAAAGCCACCCGCAGCAGCCAGGGCAACGCCGTCGGGC
TACCCACCGCTTCCGAGTGCGGCCCCCACGCCTTTTGGGGGTGCACGGGC
ATCATCGGCAGCAGCAAAGTCACCACCCACAGCAGCGACAGCAGCAGCCA
AGCCAGCGGCTGCCGCCACTTCCATGCCCTCATACCGCCCGCCTCTCTCC
AGCGCTGCCCCCACGTCCTTCGGGTTCCGGGCGGCGGCGCCCGCGGCGTC
GGCAGAGCCGGCGCCAGACAAGGCTGCAGACAGGACTGCCCTCACCGCCA
CCGCCGGCTTCTCTTTGCCTACTCGCCCCTCGGGGGCGCCTCCGGCCCCG
GCCCCAGGCACGGCCCCAGCCAGCAGCGGCGGCGGTGGCAGTGGCATCGG
AGGCGGCCTATCAGGCAGTGGCATCCGAGGCGACCTTTCGGGCTTCGCCG
CCACCGCGGCCCACCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1379900..1382616+

>mRNA_S-ischiensis_contig9.20558.1 ID=mRNA_S-ischiensis_contig9.20558.1|Name=mRNA_S-ischiensis_contig9.20558.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2832bp|location=Sequence derived from alignment at S-ischiensis_contig9:1379900..1382616+ (Schizocladia ischiensis KU_0333)
GGGGCGGCGGCAGCGGCGTCAGGGGGGGCGGAGCCTAAGGAGCAGCAGGG
AGAGAGGGTGCCAGCGGGGGCGGCGGCAGCGGCGTCAGGGGGGGCGGAGC
CTAAGGAGCAGCAGGGAGAGAGGGTGCCAGCGGTGTTCAAACCGGCCGCG
GGATCAGAGGCGGGTCCTTCGGGTGGTCCTGGTCCCTCCGACGCCTCTGG
ACCTGCTTCTGAGGAGAGTCCCGCCGCTGCTGCCGCAACGGACACGGCAG
AGGTGGTGGCAACACCGGCGGCAAAGCCAGAATCAGCACCAGCCAAGCCT
ACACCGCCGGGATATCCCCCCCTTCCCAGCGCTGCCCCCAAGCCCTTGCC
CTTTGCGCCACTGGCCGCGCCCGCAACGGTGGTGGCGGCGCCGGCGGCGG
CGCCGGTGGGGGCGGCTTCAGCAGCGGCTTCGGCTCCAGCAGCTGCCAAG
GCTACACCGTCGGGCTACCCGCCCCTCGCGAGTGCTGCCCCCACGCCCTT
TGGGCGGGCACCCGTGACGTCGGCGGCAACAAAGCCAGCAGCAGCAGCAG
CAGCGGCCAAGCCAGCCGCAGCCAAGGCAACACCGTCGGGCTACCCGCCG
CTGCCGAGTTCGGCGCCCACGCCCGTTTGGGGGGCAGGCGCAGCATCGGC
GGCAGCCAAACCGCCAGCATCGGCCACGCCCTTTGCGTTTGCACCCGCTG
CTGCGCCGGCTCCCGCGGCAAAGCCACCCGCAGCAGCCAAGGCCACGCCA
TCGGGCTATCCGCCGCTCGCGAGCTCGGCGCCCACGCCCTTTGGGGGGGC
AGGCGCAGCATCGGCGGCAGCCAAGCCGCCAGCAGTGTTCAAACCGGCCG
CGGGATCAGAGGCGGGTCCTTCGGGTGGTCCTGGTCCCTCCGACGCCTCT
GGACCTGCTTCTGAGGAGAGTCCCGCCGCTGCTGCCGCAACGGACACGGC
AGAGGTGGTGGCAACACCGGCGGCAAAGCCAGAATCAGCACCAGCCAAGC
CTACACCGCCGGGATATCCCCCCCTTCCCAGCGCTGCCCCCAAGCCCTTG
CCCTTTGCGCCACTGGCCGCGCCCGCAACGGTGGTGGCGGCGCCGGCGGC
GGCGCCGGTGGGGGCGGCTTCAGCAGCGGCTTCGGCTCCAGCAGCTGCCA
AGGCTACACCGTCGGGCTACCCGCCCCTCGCGAGTGCTGCCCCCACGCCC
TTTGGGCGGGCACCCGTGACGTCGGCGGCAACAAAGCCAGCAGCAGCAGC
AGCAGCGGCCAAGCCAGCCGCAGCCAAGGCAACACCGTCGGGCTACCCGC
CGCTGCCGAGTTCGGCGCCCACGCCCGTTTGGGGGGCAGGCGCAGCATCG
GCGGCAGCCAAACCGCCAGCATCGGCCACGCCCTTTGCGTTTGCACCCGC
TGCTGCGCCGGCTCCCGCGGCAAAGCCACCCGCAGCAGCCAAGGCCACGC
CATCGGGCTATCCGCCGCTCGCGAGCTCGGCGCCCACGCCCTTTGGGGGG
GCAGGCGCAGCATCGGCGGCAGCCAAGCCGCCAGCACATCGGCGGCAGCC
AAGCCACCAGCAGCGGCCACGCCCTTTGCGTTTGCGCCCGCTGCTGCGCC
GGCTCCCGCAGCAAAGCCACCCGCAGCAGCCAAGGCAACCACGCCGTCGG
GCTATCCACCACTTCCGAGTTCGGCGCCCATGCCCTTTGGGGGGGCAGGC
ACAGCATCGGCGGCAGCAAAGCCGCCAGCAGCGGCCACGCCCTTTGCGTT
TGCGCCCGCTGcCGCGCCGGCTCCCGCGGCGGCGGCGGCGGTGGCAGCGG
GAGCAAAGCCGCCCGCAGCAGCCAAGGCAACGCCGTCGGGCTATCCACCG
CTTCCGAGTTCGGCGCCCACGCCCTTTGGGGGGGCAGGCGCAGCATCGGC
GGCAGCCAAGCCACCAGCGGCGGCCACACCCTTTGCGTTTGCGCCCGCTG
CCGCGCCGGCTCCCGCGGCGGCGGCGGCAGCGGGAGCCAAGCCACCCGCA
GCAGCCAAGACAACGCCATCGGGCTATCCACCGCTTCCCAGTTCGGCGCC
CACGCCCTTTGGGGGGGCAGGCGCAGCATCGGCGGCAGCCAAGCCACCAG
CAGCGGCCACGCCTTTTGCCTTCGCCCCCGCTGCTGCGCCGGCTCCCGCG
GCGGCGGCGGCCGCCGGGGCGGCAGCGGGAGTAACATCGGCGGCAGCCAA
GCCACCAGCAGCGGCCACGCCCTTTGCGTTTGCGCCCGCTGCTGCGCCGG
CTCCCGCAGCAAAGCCACCCGCAGCAGCCAAGGCAACCACGCCGTCGGGC
TATCCACCACTTCCGAGTTCGGCGCCCATGCCCTTTGGGGGGGCAGGCAC
AGCATCGGCGGCAGCAAAGCCGCCAGCAGCGGCCACGCCCTTTGCGTTTG
CGCCCGCTGcCGCGCCGGCTCCCGCGGCGGCGGCGGCGGTGGCAGCGGGA
GCAAAGCCGCCCGCAGCAGCCAAGGCAACGCCGTCGGGCTATCCACCGCT
TCCGAGTTCGGCGCCCACGCCCTTTGGGGGGGCAGGCGCAGCATCGGCGG
CAGCCAAGCCACCAGCGGCGGCCACACCCTTTGCGTTTGCGCCCGCTGCC
GCGCCGGCTCCCGCGGCGGCGGCGGCAGCGGGAGCCAAGCCACCCGCAGC
AGCCAAGACAACGCCATCGGGCTATCCACCGCTTCCCAGTTCGGCGCCCA
CGCCCTTTGGGGGGGCAGGCGCAGCATCGGCGGCAGCCAAGCCACCAGCA
GCGGCCACGCCTTTTGCCTTCGCCCCCGCTGCTGCGCCGGCTCCCGCGGC
GGCGGCGGCCGCCGGGGCGGCAGCGGGAGTAA
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