mRNA_S-ischiensis_contig9.20474.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20474.1
Unique NamemRNA_S-ischiensis_contig9.20474.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:619579..621901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size387
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.4369137-CDS-S-ischiensis_contig9:619579..6196361622817364.4369137-CDS-S-ischiensis_contig9:619579..619636Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 619580..619636 -
1695741058.9454408-CDS-S-ischiensis_contig9:619579..6196361695741058.9454408-CDS-S-ischiensis_contig9:619579..619636Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 619580..619636 -
1622817364.4491787-CDS-S-ischiensis_contig9:621574..6219011622817364.4491787-CDS-S-ischiensis_contig9:621574..621901Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 621575..621901 -
1695741058.9622874-CDS-S-ischiensis_contig9:621574..6219011695741058.9622874-CDS-S-ischiensis_contig9:621574..621901Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 621575..621901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20474.1prot_S-ischiensis_contig9.20474.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 619580..621901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20474.1

>prot_S-ischiensis_contig9.20474.1 ID=prot_S-ischiensis_contig9.20474.1|Name=mRNA_S-ischiensis_contig9.20474.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
GNQSLLALRRCDLAGGRRLQAQEVRPPNPHQGTFATPRSRFGKAPASVVY
TPWHFRVGVEGGLLSTVGFGVIDGRNWPVGIQPRFHRKNNIMSAVFLARM
DENSRDFVKARAGVSGGARAPGRPAHAL
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mRNA from alignment at S-ischiensis_contig9:619579..621901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20474.1 ID=mRNA_S-ischiensis_contig9.20474.1|Name=mRNA_S-ischiensis_contig9.20474.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2323bp|location=Sequence derived from alignment at S-ischiensis_contig9:619579..621901- (Schizocladia ischiensis KU_0333)
GGAAATCAAAGTTTGCTTGCTTTGCGACGCTGCGACCTGGCGGGGGGGCG
CCGTCTGCAGGCCCAGGAGGTCAGGCCCCCAAATCCGCACCAGGGGACAT
TCGCTACCCCGCGCAGTCGCTTTGGCAAGGCGCCGGCGAGCGTGGTGTAC
ACCCCTTGGCATTTTCGGGTAGGCGTTGAAGGCGGATTGCTATCTACAGT
AGGCTTCGGAGTGATTGACGGAAGGAATTGGCCGGTGGGGATACAGCCTC
GATTCCACCGCAAGAACAACATCATGAGCGCGGTGTTTCTGGCGCGTATG
GACGAGAACTCCAGGGATTTCGTCAAGGTGGGGGTGTTCCTTTGCCCTCC
CCCATCGCAGGAATTCAAACAAGCTCGACCACGCTTGCGTACCTGCGCAC
GCCTCGCTTAGGAGCCTAGCATAGCTCTGATTAGCCCTACAACGGCGGTG
TACTGTCGTGACTCTGTTCGGCAGCCCAATCGATACTACGGCGGTGCACC
ATGTGGCGGCCTCTATGTTAACTTAGGCTAGCCCAACTGTTCCCCCTGTG
TTAAGGCTCGGTCTCACTTGAGCCAGGTGGGTTTCATCACGGCTGTGCCC
GTGGGCGGGTCGTTCTGATGTATATATTAGGCCATCAGGTCTAGGTCAGG
CCGCACATTTCACGCGGGGCACGTGGTAAGCCGGTGTTGCCCGCGTCTGA
GCTGCAGCTGCAAGACGTTGGCTGATCGCGTGAGAGCTTAAAGCTCTACT
GCAAGCTACGGCCGGAAAAGCTGTGAGCTTCGGCCAGTATCTGCGCCGCG
TCACACGAAACGTCCTGATCCGCTTGGGAGTCCAGTCCCATGTATCCCCT
GCGCCGCACCGAGCACCCCCCGGGTCGATTGGCGTGACTAGCTTCGAAGA
AAGAGGGTATCGCGAGATTTCCAGGCACTCAGTCCTTCTGCTGAGCGCCT
TGTTTCATTTAAACCTCGCTTGGCTTATACCTACCAAGCGCAGCACATCC
ACTTCTGTCCGAGTCCGACTATACCCCAGGTGGGGAAAGTTGAGGCCTTG
CATCCCTTGGGGGCTCTCAGAGAGCGGCCGTTCTTAGCGGGGACTGAGAA
ATGCGCGAGGCTAGGGTTCAGGGTTAGGGTCAGGGTTAAGGTTAGGGTTA
GGCAAAGTGCGCGAAACGTGCAGGCGTTTCAAAGGTCCGAAATATCGTTG
TTTCGGATGTGGCACGCTCCGCTGCGAACCCCAGGCCGAGCCCCCAGAAG
AATGGCGGCATAGAAATGCGTGCTCGGGGCACGAAGAGGGCCATGCGAGA
TACCGTAGTCGTCGGAGAGTTTTTGCCCTCACGGGACAATTTTCGGGGGA
ACATTTCTGGCCGGACAGGTCCTGGATTGTCCCGAAAGTCCTCGGAAAAG
TTCCCCCAGGTCCTGAGGGATATTTTCCAAGTTTTCGTGCGCGAATCCGG
CCAGTATTCGGCGAGAAATGCCCTCCCGAAAATTGGCCCGGGGGGCCAAG
ATCTCTCCGACGATTTACGGTATCCGCGCGCCACTCGGCACACAACAGGC
AAAACTTTCAAACTTCGAGGAGCAAAACATGCGGTGTTTCTCAGCGGCCC
TCTGCGTCGATGGTAAAGTAGCGCCCAGAGTTTTCCGCTCACCCGCCATC
ACCCGCGAGGCCCTCCTGGTACTCATCACAAAATGCCCCTCGGTTCGTCA
ACCATGCCCAGGGCGAGGGACGGAGCGGGAGGGGGAGAGGGATAGAGATG
CGCTTAAGCCTTCTACCCCTGGGGTCCGTATAATCATAGGGTTTAGTGCG
TAAGTCCAATCAACCAGGGGTAAAACGGTTCAGTCATCCGGTGCGTCCGC
CGCTTTTGCCGCCACAGAGCCCTGAGCCTGCCCTGAATGCCCGCCGGCTC
CGTGACGTCCCCCCCTCCCCCGTCCCCCCCCCCCCCCCGCCGTCGCTGGA
ATCCGCCCCAGCCAGTGATGGAATATCTAGGCAAATCAACCTATCTATCC
ACAGTACTGATCTATTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCC
GTGCCAAAAGGCTCGTCCCGAAACGGGACTGAACAAAGGCCTTCTTCCCC
TCACAGGGCAAGGAGAAACAAAAAATATATCTGTCGGTACTAGTCGATAT
TCGATAGTTTGACCCACACTAAATCCAAGTAGCTAGTCACGCCACCCACA
AAATCAGTCGAGCTCGATCGCTATCACTGATCGATATTCCATCACTGGCC
CCAGCTCCACTCCAGGCGCGAGCAGGTGTTTCGGGAGGAGCGCGAGCTCC
GGGGCGGCCAGCGCATGCTCTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:619579..621901-

>mRNA_S-ischiensis_contig9.20474.1 ID=mRNA_S-ischiensis_contig9.20474.1|Name=mRNA_S-ischiensis_contig9.20474.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig9:619579..621901- (Schizocladia ischiensis KU_0333)
GGAAATCAAAGTTTGCTTGCTTTGCGACGCTGCGACCTGGCGGGGGGGCG
CCGTCTGCAGGCCCAGGAGGTCAGGCCCCCAAATCCGCACCAGGGGACAT
TCGCTACCCCGCGCAGTCGCTTTGGCAAGGCGCCGGCGAGCGTGGTGTAC
ACCCCTTGGCATTTTCGGGTAGGCGTTGAAGGCGGATTGCTATCTACAGT
AGGCTTCGGAGTGATTGACGGAAGGAATTGGCCGGTGGGGATACAGCCTC
GATTCCACCGCAAGAACAACATCATGAGCGCGGTGTTTCTGGCGCGTATG
GACGAGAACTCCAGGGATTTCGTCAAGGGAAATCAAAGTTTGCTTGCTTT
GCGACGCTGCGACCTGGCGGGGGGGCGCCGTCTGCAGGCCCAGGAGGTCA
GGCCCCCAAATCCGCACCAGGGGACATTCGCTACCCCGCGCAGTCGCTTT
GGCAAGGCGCCGGCGAGCGTGGTGTACACCCCTTGGCATTTTCGGGTAGG
CGTTGAAGGCGGATTGCTATCTACAGTAGGCTTCGGAGTGATTGACGGAA
GGAATTGGCCGGTGGGGATACAGCCTCGATTCCACCGCAAGAACAACATC
ATGAGCGCGGTGTTTCTGGCGCGTATGGACGAGAACTCCAGGGATTTCGT
CAAGGCGCGAGCAGGTGTTTCGGGAGGAGCGCGAGCTCCGGGGCGGCCAG
CGCATGCTCTAGCGCGAGCAGGTGTTTCGGGAGGAGCGCGAGCTCCGGGG
CGGCCAGCGCATGCTCTA
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