mRNA_S-ischiensis_contig9.20443.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20443.1
Unique NamemRNA_S-ischiensis_contig9.20443.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:440509..442073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.8754761-CDS-S-ischiensis_contig9:440508..4407121622817363.8754761-CDS-S-ischiensis_contig9:440508..440712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 440509..440712 +
1695741058.606458-CDS-S-ischiensis_contig9:440508..4407121695741058.606458-CDS-S-ischiensis_contig9:440508..440712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 440509..440712 +
1622817363.8894687-CDS-S-ischiensis_contig9:441904..4420721622817363.8894687-CDS-S-ischiensis_contig9:441904..442072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 441905..442072 +
1695741058.615148-CDS-S-ischiensis_contig9:441904..4420721695741058.615148-CDS-S-ischiensis_contig9:441904..442072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 441905..442072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20443.1prot_S-ischiensis_contig9.20443.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 440509..442072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20443.1

>prot_S-ischiensis_contig9.20443.1 ID=prot_S-ischiensis_contig9.20443.1|Name=mRNA_S-ischiensis_contig9.20443.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
KAAASTTDISDEKGRGAMVVAGGDDAPHPHVVCVPLLGDGRLSRASLEAP
GGGLAALEEALERFRPDLIMLAAGFSGRAAAHAPGSAGGVVSYSKGEGQD
QGQDRAPVDGGGRGGGGGGGGGRG
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mRNA from alignment at S-ischiensis_contig9:440509..442073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20443.1 ID=mRNA_S-ischiensis_contig9.20443.1|Name=mRNA_S-ischiensis_contig9.20443.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1565bp|location=Sequence derived from alignment at S-ischiensis_contig9:440509..442073+ (Schizocladia ischiensis KU_0333)
AAGGCTGCCGCAAGCACAACAGACATCTCAGATGAGAAGGGGAGGGGTGC
CATGGTGGTGGCGGGGGGGGATGATGCCCCTCATCCGCACGTGGTCTGTG
TGCCGCTGCTTGGGGATGGAAGGCTTTCGCGGGCGAGCCTGGAGGCCCCC
GGGGGGGGGTTGGCGGCTTTGGAGGAGGCCCTGGAGAGGTTCCGGCCAGA
CCTGGTGAGTTGCGGTTATGGAATATGGAAGCAAATCAACATGTTTATCG
ACAGTACTGATATATTTTGAGTGGTAGACAAGCGGCGAGTTCCAGCCCCG
TGCCAAAAGGCTCGTCCCGAAACAGGGCTCAACGAAGCTCTTCCTTCCCT
CGCAGGGCAAGACATCTATCGATAGTCGATATTTGATAGTTTGACCCACA
CTAAACCCAAGTACGAAGTAGTTAGTATTATAGTTAGTAACGCCACCCAC
ACAATCAGTCGAGCCCGACAACTATCTACTGATCGATAATCCATCACTGC
TGAGTTGGTCTTCCCTCGTCCGGGAAGGGTTAGAGAGACTAATAAGCGAG
GCCCGGTCAATGTCACTACTGACTGACCTCAATGGTGGGCCTTCTGTGTG
GAAATAAAAGAATTGAGCGGAAAATAGAGGTGATCCTTCTTTTGCGAGCT
ATGGGAAGGGTTATAGAGACTCATACGCGAGGCCCGGTTAATGTCACTAC
TGACTGACCTCAACAGTGGGCCTGCCTGCACTGGCAATCAAGGAGAGGGC
AAATCACGGGGGCTGGAAGTGGGGGGAGGAGAGGAGAGGAGATGTGATTG
TGCATTTTTCTTCGAGATGGTTGCCGTGTAATACGAGTACGGTGTGATGT
GTACTCTGGGGTTGTCTGTTCCGTTGTCTTCGCCAAGGTTGGGCTAAGTA
CTTGACCCTTTTACCCGTGGGGTCCGTAGCACTATATTTCGAAGTAGAGT
TTAAGTGTACAAGTCCAATTTAGCAGGGGTAAAAGGGTTTAACGTTCTCG
ACTCGCCCGGATTCCCAAGTACTTCAAAGTATCAGAAATCAAGCATACTC
ACTCAGAGTTGAGCCTCAGACAGTTCACATCTTTTGCGATTGGCGCGAGC
GCTCCTTGTCATCCGCCCCCCCCTCTCCCCCTCCGTCCCCGTTGGCCCTC
TCAGCAAACACCCACACCCGTCACAGAAACGCACACGACGCGCAACACAC
GTGCTGACACAACACACGCATGCACACACACACACATACACACACACACA
GACGCTTTTTACAAACACCTCGCGAGTGAAAGGACGGGCTTCCGGGGGTG
GGGCCCTGAACTCGCGTAAGTGGGCACACCTCTTCTTTCCCACTCGCTTG
TTTCTCTTCTTGCAAAAAACACCTCGCGCGCTCCTCGCAAATGCAGATCA
TGCTGGCGGCCGGGTTTAGCGGGCGGGCGGCAGCCCACGCCCCGGGGAGT
GCCGGTGGTGTCGTGTCATACTCCAAGGGGGAGGGACAGGACCAGGGCCA
GGACAGGGCTCCAGTCGACGGAGGGGGGCGCGGCGGTGGCGGCGGCGGCG
GCGGCGGCAGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:440509..442073+

>mRNA_S-ischiensis_contig9.20443.1 ID=mRNA_S-ischiensis_contig9.20443.1|Name=mRNA_S-ischiensis_contig9.20443.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig9:440509..442073+ (Schizocladia ischiensis KU_0333)
AAGGCTGCCGCAAGCACAACAGACATCTCAGATGAGAAGGGGAGGGGTGC
CATGGTGGTGGCGGGGGGGGATGATGCCCCTCATCCGCACGTGGTCTGTG
TGCCGCTGCTTGGGGATGGAAGGCTTTCGCGGGCGAGCCTGGAGGCCCCC
GGGGGGGGGTTGGCGGCTTTGGAGGAGGCCCTGGAGAGGTTCCGGCCAGA
CCTGAAGGCTGCCGCAAGCACAACAGACATCTCAGATGAGAAGGGGAGGG
GTGCCATGGTGGTGGCGGGGGGGGATGATGCCCCTCATCCGCACGTGGTC
TGTGTGCCGCTGCTTGGGGATGGAAGGCTTTCGCGGGCGAGCCTGGAGGC
CCCCGGGGGGGGGTTGGCGGCTTTGGAGGAGGCCCTGGAGAGGTTCCGGC
CAGACCTGATCATGCTGGCGGCCGGGTTTAGCGGGCGGGCGGCAGCCCAC
GCCCCGGGGAGTGCCGGTGGTGTCGTGTCATACTCCAAGGGGGAGGGACA
GGACCAGGGCCAGGACAGGGCTCCAGTCGACGGAGGGGGGCGCGGCGGTG
GCGGCGGCGGCGGCGGCGGCAGGGGGATCATGCTGGCGGCCGGGTTTAGC
GGGCGGGCGGCAGCCCACGCCCCGGGGAGTGCCGGTGGTGTCGTGTCATA
CTCCAAGGGGGAGGGACAGGACCAGGGCCAGGACAGGGCTCCAGTCGACG
GAGGGGGGCGCGGCGGTGGCGGCGGCGGCGGCGGCGGCAGGGGG
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