mRNA_S-ischiensis_contig89.20359.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig89.20359.1
Unique NamemRNA_S-ischiensis_contig89.20359.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig89.20359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig89contigS-ischiensis_contig89:368866..370015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1150
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig89.20359.1prot_S-ischiensis_contig89.20359.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig89 368892..369788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.0463972-UTR-S-ischiensis_contig89:368865..3688911622817360.0463972-UTR-S-ischiensis_contig89:368865..368891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 368866..368891 +
1695741055.453209-UTR-S-ischiensis_contig89:368865..3688911695741055.453209-UTR-S-ischiensis_contig89:368865..368891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 368866..368891 +
1622817360.0782564-UTR-S-ischiensis_contig89:369788..3700151622817360.0782564-UTR-S-ischiensis_contig89:369788..370015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 369789..370015 +
1695741055.4788013-UTR-S-ischiensis_contig89:369788..3700151695741055.4788013-UTR-S-ischiensis_contig89:369788..370015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig89 369789..370015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817360.062195-CDS-S-ischiensis_contig89:368891..3697881622817360.062195-CDS-S-ischiensis_contig89:368891..369788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 368892..369788 +
1695741055.466079-CDS-S-ischiensis_contig89:368891..3697881695741055.466079-CDS-S-ischiensis_contig89:368891..369788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig89 368892..369788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig89.20359.1

>prot_S-ischiensis_contig89.20359.1 ID=prot_S-ischiensis_contig89.20359.1|Name=mRNA_S-ischiensis_contig89.20359.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=299bp
MLAGSTHGGRGGLRATRRHRQGRLGPGLPELEGRQHPETASGGAAAGSVL
AQGPGRLSPQRGDSSARSRDGDNCSLTFHQRVILARVLGLVAPGTVAAAS
ASPLATPGPPLELLAARGGGGGGGGGDGDYDSEMHPHPPRPPQPEPLAPL
ARQLDSPIAREGLTRSRSVRVEAGGGRASPGPGPGPLVRVLQHRDRPGGG
VNLEPFDSGESIASRSGPRAHAGVLAARQTLSGLLLRLAPPPGPAAATAA
ATAAAAEPQADLDSSESPITTAARAAAPGPGPRIRALGDGTAERPFIL*
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mRNA from alignment at S-ischiensis_contig89:368866..370015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig89.20359.1 ID=mRNA_S-ischiensis_contig89.20359.1|Name=mRNA_S-ischiensis_contig89.20359.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1150bp|location=Sequence derived from alignment at S-ischiensis_contig89:368866..370015+ (Schizocladia ischiensis KU_0333)
GCAGCGGCGGCGGCAGCGCCAGGCATATGCTCGCAGGCTCCACGCATGGG
GGCCGGGGTGGACTCCGGGCCACGCGCCGCCACCGACAGGGGCGACTCGG
GCCCGGACTCCCCGAACTTGAAGGACGCCAACACCCGGAAACAGCCAGTG
GGGGCGCGGCGGCCGGAAGCGTCCTAGCCCAGGGCCCAGGCCGACTGTCT
CCGCAGCGAGGTGACTCCTCGGCCCGGAGCCGCGACGGCGACAACTGCAG
CCTTACCTTCCACCAGAGGGTCATCCTGGCCCGTGTGCTGGGCCTGGTCG
CGCCGGGCACGGTGGCAGCAGCGTCCGCGTCGCCACTGGCAACCCCGGGG
CCCCCGCTGGAGCTACTGGCGGCACGCGGCGGCGGCGGCGGCGGCGGCGG
TGGTGACGGCGACTACGACAGCGAAATGCACCCGCACCCGCCCCGACCGC
CACAGCCTGAGCCGCTGGCACCGCTGGCCCGACAACTGGACAGCCCGATC
GCACGGGAGGGACTGACTCGGAGCCGTTCCGTCCGAGTCGAAGCCGGTGG
GGGGCGGGCCAGCCCCGGCCCCGGCCCTGGGCCGCTTGTCCGAGTCCTGC
AACACCGCGACAGGCCCGGCGGTGGCGTGAACCTGGAGCCGTTTGACTCG
GGGGAGTCCATCGCATCAAGATCAGGCCCTCGGGCTCATGCTGGGGTCCT
GGCGGCCCGCCAGACCTTGTCTGGCCTCCTGCTTCGGCTCGCGCCGCCAC
CAGGCCCTGCCGCCGCCACTGCCGCCGCCACCGCCGCTGCCGCCGAACCC
CAGGCTGACTTAGACTCCTCAGAGAGCCCAATCACCACAGCGGCTCGGGC
CGCGGCCCCCGGCCCAGGCCCGAGGATACGGGCTCTGGGGGATGGCACGG
CGGAACGGCCCTTCATTTTGTGATTACTTGGGAGTCGAACTGTGCGTACT
TCGGGGGCGTTCGATATATTATCAGGCGAGGTGCACTGTAGTTCCAACTC
ACATGTGCTGTGTGGTGCGCATCCAAGCCTGCAAGTTTACAGTAAATGTA
CCTACTTCGAAGTACTTGGCAGCATGGCTGTAGCATGCCGTCCGGCACAC
AGGGCTCATGGTATGGAGACACGTGCACTAAGTAACGTGAACGGGAGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig89:368866..370015+

>mRNA_S-ischiensis_contig89.20359.1 ID=mRNA_S-ischiensis_contig89.20359.1|Name=mRNA_S-ischiensis_contig89.20359.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1794bp|location=Sequence derived from alignment at S-ischiensis_contig89:368866..370015+ (Schizocladia ischiensis KU_0333)
ATGCTCGCAGGCTCCACGCATGGGGGCCGGGGTGGACTCCGGGCCACGCG
CCGCCACCGACAGGGGCGACTCGGGCCCGGACTCCCCGAACTTGAAGGAC
GCCAACACCCGGAAACAGCCAGTGGGGGCGCGGCGGCCGGAAGCGTCCTA
GCCCAGGGCCCAGGCCGACTGTCTCCGCAGCGAGGTGACTCCTCGGCCCG
GAGCCGCGACGGCGACAACTGCAGCCTTACCTTCCACCAGAGGGTCATCC
TGGCCCGTGTGCTGGGCCTGGTCGCGCCGGGCACGGTGGCAGCAGCGTCC
GCGTCGCCACTGGCAACCCCGGGGCCCCCGCTGGAGCTACTGGCGGCACG
CGGCGGCGGCGGCGGCGGCGGCGGTGGTGACGGCGACTACGACAGCGAAA
TGCACCCGCACCCGCCCCGACCGCCACAGCCTGAGCCGCTGGCACCGCTG
GCCCGACAACTGGACAGCCCGATCGCACGGGAGGGACTGACTCGGAGCCG
TTCCGTCCGAGTCGAAGCCGGTGGGGGGCGGGCCAGCCCCGGCCCCGGCC
CTGGGCCGCTTGTCCGAGTCCTGCAACACCGCGACAGGCCCGGCGGTGGC
GTGAACCTGGAGCCGTTTGACTCGGGGGAGTCCATCGCATCAAGATCAGG
CCCTCGGGCTCATGCTGGGGTCCTGGCGGCCCGCCAGACCTTGTCTGGCC
TCCTGCTTCGGCTCGCGCCGCCACCAGGCCCTGCCGCCGCCACTGCCGCC
GCCACCGCCGCTGCCGCCGAACCCCAGGCTGACTTAGACTCCTCAGAGAG
CCCAATCACCACAGCGGCTCGGGCCGCGGCCCCCGGCCCAGGCCCGAGGA
TACGGGCTCTGGGGGATGGCACGGCGGAACGGCCCTTCATTTTGTGAATG
CTCGCAGGCTCCACGCATGGGGGCCGGGGTGGACTCCGGGCCACGCGCCG
CCACCGACAGGGGCGACTCGGGCCCGGACTCCCCGAACTTGAAGGACGCC
AACACCCGGAAACAGCCAGTGGGGGCGCGGCGGCCGGAAGCGTCCTAGCC
CAGGGCCCAGGCCGACTGTCTCCGCAGCGAGGTGACTCCTCGGCCCGGAG
CCGCGACGGCGACAACTGCAGCCTTACCTTCCACCAGAGGGTCATCCTGG
CCCGTGTGCTGGGCCTGGTCGCGCCGGGCACGGTGGCAGCAGCGTCCGCG
TCGCCACTGGCAACCCCGGGGCCCCCGCTGGAGCTACTGGCGGCACGCGG
CGGCGGCGGCGGCGGCGGCGGTGGTGACGGCGACTACGACAGCGAAATGC
ACCCGCACCCGCCCCGACCGCCACAGCCTGAGCCGCTGGCACCGCTGGCC
CGACAACTGGACAGCCCGATCGCACGGGAGGGACTGACTCGGAGCCGTTC
CGTCCGAGTCGAAGCCGGTGGGGGGCGGGCCAGCCCCGGCCCCGGCCCTG
GGCCGCTTGTCCGAGTCCTGCAACACCGCGACAGGCCCGGCGGTGGCGTG
AACCTGGAGCCGTTTGACTCGGGGGAGTCCATCGCATCAAGATCAGGCCC
TCGGGCTCATGCTGGGGTCCTGGCGGCCCGCCAGACCTTGTCTGGCCTCC
TGCTTCGGCTCGCGCCGCCACCAGGCCCTGCCGCCGCCACTGCCGCCGCC
ACCGCCGCTGCCGCCGAACCCCAGGCTGACTTAGACTCCTCAGAGAGCCC
AATCACCACAGCGGCTCGGGCCGCGGCCCCCGGCCCAGGCCCGAGGATAC
GGGCTCTGGGGGATGGCACGGCGGAACGGCCCTTCATTTTGTGA
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