mRNA_S-ischiensis_contig11.2362.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2362.1
Unique NamemRNA_S-ischiensis_contig11.2362.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3381818..3384785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.9756088-CDS-S-ischiensis_contig11:3381817..33819301622815580.9756088-CDS-S-ischiensis_contig11:3381817..3381930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3381818..3381930 +
1695739783.5087059-CDS-S-ischiensis_contig11:3381817..33819301695739783.5087059-CDS-S-ischiensis_contig11:3381817..3381930Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3381818..3381930 +
1622815580.9891067-CDS-S-ischiensis_contig11:3384531..33847841622815580.9891067-CDS-S-ischiensis_contig11:3384531..3384784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3384532..3384784 +
1695739783.5205204-CDS-S-ischiensis_contig11:3384531..33847841695739783.5205204-CDS-S-ischiensis_contig11:3384531..3384784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3384532..3384784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2362.1prot_S-ischiensis_contig11.2362.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3381818..3384784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2362.1

>prot_S-ischiensis_contig11.2362.1 ID=prot_S-ischiensis_contig11.2362.1|Name=mRNA_S-ischiensis_contig11.2362.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
RLAGEVFGKGVDQETREAISEVLEAARGRAKREAAAVRADKETTGQAAES
SRRRNGAGELRFSNGHEGWLNNEAAAAGASPSPGQPGCAPPPLPADGSRN
PRPAASAVTSGPGTPTSSSGPI
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mRNA from alignment at S-ischiensis_contig11:3381818..3384785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2362.1 ID=mRNA_S-ischiensis_contig11.2362.1|Name=mRNA_S-ischiensis_contig11.2362.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2968bp|location=Sequence derived from alignment at S-ischiensis_contig11:3381818..3384785+ (Schizocladia ischiensis KU_0333)
CGGTTGGCGGGCGAGGTGTTTGGCAAGGGCGTGGACCAGGAGACGAGGGA
GGCTATCTCGGAGGTGCTGGAGGCTGCGAGGGGGAGGGCTAAGCGGGAAG
CGGCGGCGGTGAGGTGAGTGGGTGATTGCGGGCCGGGGGTTTGGGCGTTT
TGTGGAGGAGCTGTTTTGGTGACTGACGGACGGATGGATGGATGGAGGGG
TGGGCGGGCGGGGGGGAGGGAGGGAGGGAGGGAGGACGACGGAGAGGATA
AGTGGTGCAGGACGCGCTTTTGTGCTCCTGTGCTTCCCAAACTATGTACC
TACATTGTACTGTAGTAGGTATAGCAGCTACTATACTGACTACCTGCTGT
ACTGTACAGTGGTGTACTCGTAGTCCGGGCACGACGCTTTCGAGAAAAGT
TGGTGATTCACGTGTCGATTTATTGCTTGTGACGGGCTTTGAAGTGGAAG
ATGTCGAAAATACTTAACCCTCGGAAAGCTCTCTTTTGAGCCCGACAAGT
TCCTCGGAGCCTTTTTTTTGTCACGAGATATCAGCTATCAGAGCCAAATC
TCTCTTGATTTTATTTGGCCCCAACTATGTATGTACTTGTATCGGAGCAA
TAATCTGAGCCCGGATTCGGACAGATCTTGCTCCGGGCCGTCGTTCCCGA
ATTGAATCGAACTGGAGCTCCCAAACATTGGCAAAAGAAAACATTCTGGA
AGTTGGTTTTAGTCTCAAAAATGAACCGTATTATCTCAAAATTGGTGCCC
CTTTGGGAGTTTTTACGAGATTTGCGGGTCTGCCTCGGGGGGGCCCGATT
TTCCAAAAACATATGTAGCTTGCGAAACTGGCGCTTAAAGAAACGCCAAT
CACGACCTGATTGTTGGTGCCCCACCGCAAACCAGACACACACCAGAAAC
CATTTTTGAGGCTGGTTCTGGGCTCCTCTCATTGAGGCGATTCACATGCT
ACCACTCTGGTCCGCCAATTCATCCTACAATAGATCAAAAGTTAGAAAAT
TGCCGTTATTGCCGATATGGGGGGGGCTCCCTGTAGGGCATTACGTCGTC
TACTACTGTACAGTAGGGATTTCTCCCCTTCCCCACACAAATTTCCCCTG
GCGAGCTATAAGGAAGGGCCACTGCTGAGTTCTTTAGTGACGTGGGCTGC
ACCTCGCCCCGTGTTGTTCCTGTTAATACTAGGGATGTAGTATACTATGG
CCGTGGTTGTACTTTTCGCCGTTCTGATAAAAGTTTCACGCGCGCCGTGT
TCGAGGGCGCTGCGTCGCATGGTGCCAATTCATTATTTGTTGTGCTTCGT
TGTCGTGCTTCCGGAGAAGAAGTGGGGGCCCAGTAGTGGCCAATTTGCAG
TGCATGGGCCCTACAGTACTACAACTACAGTCCCTGCAATTTTCACGCAC
TCCATATTCGAGGGTGCTGAGTCGCGTGGTGCCAATTATTTGCCGTGATT
CGTTGTCGGGCTTCCCGAGAAGAACTAGGGGCCCAGTAGTGACCGAATTT
CTGTGCACGACCCCTACTTACTACGATTGCAGTCCTGGGAAGGGTAGCTA
CTGTAGATGGCACTCGCACAAGTGCTGGGAAGCGCAGAACAACGCGGCTG
AAGTCGTAGTAGCGGCCGCGCCGGCAGCGAGCTGTGGCCGAACCCGAGGG
TTCACATCCCTTGGAAAAGGCCACGCCCCACGTAAACATCGCCTCTCGCC
GCCGTCAGCGCACGCGCACAACCCTCGGCCCGCGGTGACATGTACCTACT
ATTAAAGGTGCTTGTACTACTGCAGTGCTTGCACTCGAGTACAGTAGCTC
GCCGGGTGAGTGTGCCGCAGGTCCCTTCCCCCTGGGTTGTTAAGGTGGAA
TCGTCCAGGATTGGCACCAGACTAGCTCTAGTGTTTGATTGGTATCTCGC
GTCGACTATATATATATGTATGTATATATCTCGCGTCGACCATTGATTCG
GACCGCGATTTTTTCTTAGTGAGAAAGCTGGCGACCGGACGGATCGATTG
CACCCGTCAGAGTCGTGCACCTCTCAGTGTTTGGCAAGTTATGGGGGTCG
ATGCATCGGCACAAGTGGAAGACAACTCGATGAACACCCGATTGCTTGCC
AACCACTGAGAGGTGCAAGGTGTGTGATGGTGGAATCGAAAGCTTGCGAG
TTGGGCTTCAATCGGCATTAAAACTCCGACGCCTGAATCGCTGGTCAATA
TCGCGAAACTAATCAAAACGTCCGGGCCCGGCGGGTTCAGTTCATTAATC
AAGTAGTTAACGGATTGGGCGCTTTACGGGCGATTTTGGGCGAAGCTGGC
AACGTTGGCAAAAAAAAAAACACCGCCAATCGATTCCTATCATCGAGACG
AATCGATGGAGCCCTCGATCGCGCGATTTGGTCAACCACCCTATATCTAG
GAATTAGTACAGAGAGAGCCGGTAAATAGCCGTTATACTGGAAATCGCGG
CTACAGCCCGAACAGTTGCTTGAATCGGATTTGAGTGACTAATGGCTCCG
ATTGAGGAGGCCGAGACGAACACGACGACAGTTTCCGCGCGTTCCAACGC
GACGTCGATGAATAGTTATAGCGACACAAAATTTGTGCCAGTCCTGGACG
ATTCCACCTTATCAGACCCCTTCCCCCGCCCCATGCCACCTCCCCAATAC
CCCGACACCACCCCCCGCGCCGCCCACACATTCGACCGACCCCCCCAAAC
CAAAAACACGAAAGAGCGGATAAGGAGACCACGGGTCAGGCTGCAGAGAG
CAGCAGGCGCCGGAACGGCGCCGGTGAGCTTCGGTTTTCCAACGGGCACG
AGGGATGGCTCAACAACGAGGCTGCTGCTGCGGGAGCGTCGCCTTCCCCG
GGCCAACCAGGCTGTGCCCCTCCCCCCCTGCCCGCAGACGGGAGTCGGAA
TCCTCGCCCCGCTGCAAGCGCTGTAACCTCGGGGCCGGGCACGCCCACAT
CGTCCTCAGGCCCAATCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3381818..3384785+

>mRNA_S-ischiensis_contig11.2362.1 ID=mRNA_S-ischiensis_contig11.2362.1|Name=mRNA_S-ischiensis_contig11.2362.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig11:3381818..3384785+ (Schizocladia ischiensis KU_0333)
CGGTTGGCGGGCGAGGTGTTTGGCAAGGGCGTGGACCAGGAGACGAGGGA
GGCTATCTCGGAGGTGCTGGAGGCTGCGAGGGGGAGGGCTAAGCGGGAAG
CGGCGGCGGTGAGCGGTTGGCGGGCGAGGTGTTTGGCAAGGGCGTGGACC
AGGAGACGAGGGAGGCTATCTCGGAGGTGCTGGAGGCTGCGAGGGGGAGG
GCTAAGCGGGAAGCGGCGGCGGTGAGAGCGGATAAGGAGACCACGGGTCA
GGCTGCAGAGAGCAGCAGGCGCCGGAACGGCGCCGGTGAGCTTCGGTTTT
CCAACGGGCACGAGGGATGGCTCAACAACGAGGCTGCTGCTGCGGGAGCG
TCGCCTTCCCCGGGCCAACCAGGCTGTGCCCCTCCCCCCCTGCCCGCAGA
CGGGAGTCGGAATCCTCGCCCCGCTGCAAGCGCTGTAACCTCGGGGCCGG
GCACGCCCACATCGTCCTCAGGCCCAATCAGCGGATAAGGAGACCACGGG
TCAGGCTGCAGAGAGCAGCAGGCGCCGGAACGGCGCCGGTGAGCTTCGGT
TTTCCAACGGGCACGAGGGATGGCTCAACAACGAGGCTGCTGCTGCGGGA
GCGTCGCCTTCCCCGGGCCAACCAGGCTGTGCCCCTCCCCCCCTGCCCGC
AGACGGGAGTCGGAATCCTCGCCCCGCTGCAAGCGCTGTAACCTCGGGGC
CGGGCACGCCCACATCGTCCTCAGGCCCAATC
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