mRNA_S-ischiensis_contig88.20328.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20328.1
Unique NamemRNA_S-ischiensis_contig88.20328.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:491357..493225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex I intermediate-associated protein 30, mitochondrial precursor (NADH dehydrogenase [ubiquinon])
Ec32 orthologEc-22_003820.1
Exons4
Model size479
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20328.1prot_S-ischiensis_contig88.20328.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 491388..493225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.6704707-UTR-S-ischiensis_contig88:491356..4913871622817358.6704707-UTR-S-ischiensis_contig88:491356..491387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 491357..491387 +
1695741054.4611683-UTR-S-ischiensis_contig88:491356..4913871695741054.4611683-UTR-S-ischiensis_contig88:491356..491387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 491357..491387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.6827433-CDS-S-ischiensis_contig88:491387..4915451622817358.6827433-CDS-S-ischiensis_contig88:491387..491545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 491388..491545 +
1695741054.476665-CDS-S-ischiensis_contig88:491387..4915451695741054.476665-CDS-S-ischiensis_contig88:491387..491545Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 491388..491545 +
1622817358.6938088-CDS-S-ischiensis_contig88:491858..4919351622817358.6938088-CDS-S-ischiensis_contig88:491858..491935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 491859..491935 +
1695741054.4887717-CDS-S-ischiensis_contig88:491858..4919351695741054.4887717-CDS-S-ischiensis_contig88:491858..491935Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 491859..491935 +
1622817358.7061057-CDS-S-ischiensis_contig88:492537..4926081622817358.7061057-CDS-S-ischiensis_contig88:492537..492608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 492538..492608 +
1695741054.4998968-CDS-S-ischiensis_contig88:492537..4926081695741054.4998968-CDS-S-ischiensis_contig88:492537..492608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 492538..492608 +
1622817358.7204592-CDS-S-ischiensis_contig88:493084..4932251622817358.7204592-CDS-S-ischiensis_contig88:493084..493225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 493085..493225 +
1695741054.5107005-CDS-S-ischiensis_contig88:493084..4932251695741054.5107005-CDS-S-ischiensis_contig88:493084..493225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 493085..493225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20328.1

>prot_S-ischiensis_contig88.20328.1 ID=prot_S-ischiensis_contig88.20328.1|Name=mRNA_S-ischiensis_contig88.20328.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
MAGPMRRAMRQLWPDTDTLLRGPALQDLVLYSFASKHSARGWDTATDAPA
GGRSKCSVEWHPWAPEEGSSAEANGPLTGYPGLQSAAGGGAARGDTVAGG
GETVPAQADPFFLGHMLGGMDGRAAVGAGGGPAGWFSSSAAYLDSITAA
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mRNA from alignment at S-ischiensis_contig88:491357..493225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20328.1 ID=mRNA_S-ischiensis_contig88.20328.1|Name=mRNA_S-ischiensis_contig88.20328.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1869bp|location=Sequence derived from alignment at S-ischiensis_contig88:491357..493225+ (Schizocladia ischiensis KU_0333)
CCGCGCCCACGGCTCCAGCCGCCTCTGGACGATGGCCGGCCCTATGCGGC
GGGCAATGCGCCAGCTGTGGCCAGACACGGACACCTTGCTGCGGGGTCCC
GCGTTGCAGGACCTCGTGCTCTACTCGTTCGCCTCCAAGCACAGCGCCCG
CGGCTGGGACACCGCGACCGACGCGCCCGCCGGGGGCAGGTCAGCGGTGC
TTGTAGGACTGCGGTCCCGGCTGTGTGCGTGATGCACACCCATAATCCAA
GATGGATTCTCACCTTTCGGAGTGGCTGTGAATGGTTGGCGGAGGCTGTC
CTGTGCTTCGAGGGGCAGATGAAGGACTGGCCTGCTATGCATTCAGCTCT
CCATGGGCCCCAGAGCTTGCTGTTCCCGCACTCCTGCTGTCTGGCCTGGC
TTAATAAAGCTTAGCACACGCCCCGTTTGCTGTGCACCCCCCATCGTGCC
CCATTCCGCGTTGCTCTTGCCCGATTTCTGTGCATGCCCCCCCCCGCAAA
AGGTCGAAATGCTCTGTCGAGTGGCACCCCTGGGCGCCGGAGGAGGGGTC
TTCCGCCGAGGCAAATGGGCCTCTCACAGGTGATTTAGCTCCATGTGCTA
CTGTGCAATACTTGTGCTTCGACTGTTGCATAGACGCACCAGCGCATGCA
TACGCACACTGCTCATGGTTTGGCCCCTCCGGCAGAAGCGCCAAGAAAGC
CAAGCACTTGGTACAGTGCTCTACTGCACAGTGTTCGTCCGGCAACTGCG
CCCGAAAAAAAAAGGGAAGAGGAAGGGAAAAAAACCCGTCCCGTGCACTC
TATTGTTCTGATCTCGTGTTTGTAAGCGTTTACTCGAGTGCGCAGTCAGC
GGCCTCTGGGCTGCGACAAGCTCTGTTCGACGTTCGTGTATCATGTTGAT
TTGCCTTCTTCAAACCACCTTCACCAAGTCGTATTTTGCAGCCTGCAGTA
GTGCGCGCCACACCTTTTTGCAAACGCCAGCAACAACAAACCCGCGCGGT
CTCCGCCCTTTTTCTccccCCCCCCCCTCTTTTTTTTTACAGTAGTTCTT
TGATTCGATCATCACTAGTACAAGGACACTCGATCCTTAAATGGGACAAC
CACGAATACGAGAACACTCAATCTCACACACGTGCGATTGTACCTCGTTG
CAATTTATATGAATCACCGCCGTCATCGCAGGCTACCCGGGTCTGCAATC
GGCTGCTGGGGGGGGCGCCGCGAGGGGTGATACTGTGGCCGGCGGTGGAG
AGGTGAGCCGCAGCGTAGCGATCCATGTACAGTAATACTAGAGTGCTTGG
ATATCTCAACAAGCCCAGCATGAGTGCATCCGTGTATTTACTGCCATGCC
CACAGGGTTGGTTAGCACCAGTGATATCGATCAGTAGGTAGTTATCGGGC
TTGGCTGATTTTGTGGGAGGCGCTACAACTACTTGGGTTTAGTGTGGGTC
ACTATCGAATATCGACTTAGTGTGGGTCACTATCGAATATCGACTATCGA
TAGATATATAGATCGGTACTGTCGATAAATAGTTTCATTTGCTTAGATAT
TCTGCTCCGTCTCGAACGAGGCGCGTGGTCAATGGGCTTGGGACTACGGC
AAGCACCACGTGAGTACACATATTATACATATATATATATATATATTCCA
CCACTGGTTGACACACCGCCTCCACCCCATGCCCCCGCCACGCACGCTCC
TTGTACTCTACGCCCCTCCCCACCCCAGACCGTGCCTGCACAAGCCGACC
CGTTTTTCTTGGGCCACATGCTGGGCGGCATGGACGGCCGGGCGGCGGTG
GGCGCCGGCGGCGGCCCCGCCGGTTGGTTTTCCTCCTCTGCTGCGTACCT
CGACTCCATAACCGCCGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:491357..493225+

>mRNA_S-ischiensis_contig88.20328.1 ID=mRNA_S-ischiensis_contig88.20328.1|Name=mRNA_S-ischiensis_contig88.20328.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig88:491357..493225+ (Schizocladia ischiensis KU_0333)
ATGGCCGGCCCTATGCGGCGGGCAATGCGCCAGCTGTGGCCAGACACGGA
CACCTTGCTGCGGGGTCCCGCGTTGCAGGACCTCGTGCTCTACTCGTTCG
CCTCCAAGCACAGCGCCCGCGGCTGGGACACCGCGACCGACGCGCCCGCC
GGGGGCAGATGGCCGGCCCTATGCGGCGGGCAATGCGCCAGCTGTGGCCA
GACACGGACACCTTGCTGCGGGGTCCCGCGTTGCAGGACCTCGTGCTCTA
CTCGTTCGCCTCCAAGCACAGCGCCCGCGGCTGGGACACCGCGACCGACG
CGCCCGCCGGGGGCAGGTCGAAATGCTCTGTCGAGTGGCACCCCTGGGCG
CCGGAGGAGGGGTCTTCCGCCGAGGCAAATGGGCCTCTCACAGGTCGAAA
TGCTCTGTCGAGTGGCACCCCTGGGCGCCGGAGGAGGGGTCTTCCGCCGA
GGCAAATGGGCCTCTCACAGGCTACCCGGGTCTGCAATCGGCTGCTGGGG
GGGGCGCCGCGAGGGGTGATACTGTGGCCGGCGGTGGAGAGGCTACCCGG
GTCTGCAATCGGCTGCTGGGGGGGGCGCCGCGAGGGGTGATACTGTGGCC
GGCGGTGGAGAGACCGTGCCTGCACAAGCCGACCCGTTTTTCTTGGGCCA
CATGCTGGGCGGCATGGACGGCCGGGCGGCGGTGGGCGCCGGCGGCGGCC
CCGCCGGTTGGTTTTCCTCCTCTGCTGCGTACCTCGACTCCATAACCGCC
GCAACCGTGCCTGCACAAGCCGACCCGTTTTTCTTGGGCCACATGCTGGG
CGGCATGGACGGCCGGGCGGCGGTGGGCGCCGGCGGCGGCCCCGCCGGTT
GGTTTTCCTCCTCTGCTGCGTACCTCGACTCCATAACCGCCGCA
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