mRNA_S-ischiensis_contig88.20309.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig88.20309.1
Unique NamemRNA_S-ischiensis_contig88.20309.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig88.20309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig88contigS-ischiensis_contig88:302769..308626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1103
Cds size819
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig88.20309.1prot_S-ischiensis_contig88.20309.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig88 303051..308626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.5441356-UTR-S-ischiensis_contig88:302768..3030501622817357.5441356-UTR-S-ischiensis_contig88:302768..303050Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 302769..303050 +
1695741053.5554492-UTR-S-ischiensis_contig88:302768..3030501695741053.5554492-UTR-S-ischiensis_contig88:302768..303050Schizocladia ischiensis KU_0333UTRS-ischiensis_contig88 302769..303050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.556366-CDS-S-ischiensis_contig88:303050..3031221622817357.556366-CDS-S-ischiensis_contig88:303050..303122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 303051..303122 +
1695741053.5643685-CDS-S-ischiensis_contig88:303050..3031221695741053.5643685-CDS-S-ischiensis_contig88:303050..303122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 303051..303122 +
1622817357.5674794-CDS-S-ischiensis_contig88:304381..3044671622817357.5674794-CDS-S-ischiensis_contig88:304381..304467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 304382..304467 +
1695741053.5730438-CDS-S-ischiensis_contig88:304381..3044671695741053.5730438-CDS-S-ischiensis_contig88:304381..304467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 304382..304467 +
1622817357.5793588-CDS-S-ischiensis_contig88:305112..3051731622817357.5793588-CDS-S-ischiensis_contig88:305112..305173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 305113..305173 +
1695741053.5884686-CDS-S-ischiensis_contig88:305112..3051731695741053.5884686-CDS-S-ischiensis_contig88:305112..305173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 305113..305173 +
1622817357.5905948-CDS-S-ischiensis_contig88:305706..3058981622817357.5905948-CDS-S-ischiensis_contig88:305706..305898Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 305707..305898 +
1695741053.6038682-CDS-S-ischiensis_contig88:305706..3058981695741053.6038682-CDS-S-ischiensis_contig88:305706..305898Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 305707..305898 +
1622817357.6017237-CDS-S-ischiensis_contig88:307075..3071831622817357.6017237-CDS-S-ischiensis_contig88:307075..307183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 307076..307183 +
1695741053.6142669-CDS-S-ischiensis_contig88:307075..3071831695741053.6142669-CDS-S-ischiensis_contig88:307075..307183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 307076..307183 +
1622817357.617249-CDS-S-ischiensis_contig88:307330..3074111622817357.617249-CDS-S-ischiensis_contig88:307330..307411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 307331..307411 +
1695741053.6256042-CDS-S-ischiensis_contig88:307330..3074111695741053.6256042-CDS-S-ischiensis_contig88:307330..307411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 307331..307411 +
1622817357.630699-CDS-S-ischiensis_contig88:308407..3086261622817357.630699-CDS-S-ischiensis_contig88:308407..308626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 308408..308626 +
1695741053.636852-CDS-S-ischiensis_contig88:308407..3086261695741053.636852-CDS-S-ischiensis_contig88:308407..308626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig88 308408..308626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig88.20309.1

>prot_S-ischiensis_contig88.20309.1 ID=prot_S-ischiensis_contig88.20309.1|Name=mRNA_S-ischiensis_contig88.20309.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=273bp
MDVRTVLRGMGGEHSQRAVSKAEEVLRQMKSKCGHLGKAESLRSHIAVDL
AMELLGENLDRKRLVELAPGKAKAYDEAYSKVRNIMGGFLGLDASAALPR
NGVMSLAMKFGGASTLRENSGNSGHKPGAIRLLEQYKEVVSRQLAPVVGA
GQTFLTGQLQQAAAFCLAEIMANERVDRGEVAKHCRVPKSELDRVCITMA
DKCNLLSNPAVQKAFPRVTGLSSPGCETASPQHGRGGANASHAPCTSPGG
GGGGGGGGGGGGGDDTMMDDDDG
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mRNA from alignment at S-ischiensis_contig88:302769..308626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig88.20309.1 ID=mRNA_S-ischiensis_contig88.20309.1|Name=mRNA_S-ischiensis_contig88.20309.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5858bp|location=Sequence derived from alignment at S-ischiensis_contig88:302769..308626+ (Schizocladia ischiensis KU_0333)
CGATAGGGTGGTGGGTTCGCGGGAGCGCAGCTGCCGCGTACAATAGGATA
GCTGGAGTTTCGCCGAGCGCTGCGGCACTTTTGCTTTCCACGTGCCCTCT
CCTTCTGCTGCGCTGGATCGTTTCACGGGGTTGGACGAGCTGCTTCGCGG
CACCTTCGCTGTAGACATTGCGCGGATTTTGGGACGCGCCCCAAACAACG
GGCCTTCGGGACGCGCGCACCAAACGCCCGGACACTCAGTCTTGAGGGGG
GGATAACCGGCGTGTGGGGTGCTGGAGGGAGCATGGACGTTCGCACGGTG
CTTCGGGGGATGGGGGGCGAGCACAGCCAGAGGGCGGTGAGCAAGGCCGA
GGAGGTGAGGGTCAGCGGTTAGCATTCGGTGGCACAGAACGCCATCTACG
TACCTGCGGCCTCCTACGCGCGGGTAGATCTTGATGGAAAGTTGAGCGGC
ACTGGCGAGTCCCGTTGGGCGTGGACATTTAGGGTGGTCCTCATGCCATC
CCCCCCCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCCTGTCTCTGATCCTCATTCTGTTGCCCTCTTTCAGCTGCAATC
AACGTCGCACCATTGCTTAGGCTTTTTGTGTGTAAATGCGAGCCGAGAGG
ATTCCAGTACTCTGCAGCAGCACCCACTTGTAGTACCGAGCCGCACATTG
GCCAGTGAAAAACCTGGCATGCCATCCCAGCATAGTAGGGCTCGAGGCGG
TGGTCCAGGAAGGGTAGCTTAACCCTTTTGCCCCTGTTCAATTGGACTTG
CACACTAAAACCCTATGATTATACGGACCCCAGGGGTAAAAGGGTTAAGG
CTGGCCTCGAGACCAAATAGGCTGGGACGGCATGCCAGGTTTTCACCCCC
CAGGCACGGCTGAGTACTAGGGTATGCTGGATCGATGGCCGGTGGCGTGC
GCAGGAAGGGATAGCCCTCTGTCCAACATGCTTTATTGAAACGCTTGGGA
GTGCATGCCTCTGTAGTATCAAGCCTTGGCAACATTTATGGCTGGTGTCT
GTTTCAACCTTGTGCTTTTTTTTACGCACATGCTGTACACAGGAGTTGAA
CACGCCTCACATCACGTGGGTGATGAGAAGTAGTCAATATTGAAACAACG
CTGGCAGGTGCTCCGCCAGATGTGGCCTAGCCTTGCGCTTTTTTTAACGC
ACATGCTGTAGGTTGAACACGCCTCACATCACACGGGTGATGATGAACGT
GTGTCTGTACTCACGTTCGGACGAGGCCTCTTGTCTCTGTGCATGCCCTG
GACCCGAACGATCCTCGTAAATGCTCCTTCGAATATTCAATAATGAAGCA
CTCACTGGCACGTGCTGCGGCACATGAAGAGCAAGTGTCGCCACCTGGGC
AATTTTTTTATGCTGCAGTTTGAACACGCCTCACATCACGTGGGTGATGA
ATAATAGCCACTAATACGAGAACACTCAATCTCACACACGCGCGATTTTA
CCTCGTTACAGTTTATTTGAGTGGTAGATAAGCAGCGAGTTCCAGGCCCC
GTGCCAAAAGGCTCGTCCCGATTTACAATTTATGTGAATCAATCAATGTT
GAAACCCTGGCAGGTGCTGCGGCAGATGAAGAGCAAGTGTGGCCACCTGG
GCAAGGCGGAGTCGCTCAGGAGCCACATCGCCGTAGACTTGGCCATGGAG
TGAGTGCCACTGTCACTGTCATACTACCGCTGTGTGTGTGTGTGTGCGTG
CGCGTGCGTGTGCGCGCGCGCGCGTGTGTGTGTGTGTGTGCGTGCGCGTG
TGTGTGTTTGTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGCGTGTG
CGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGAGTCGCTCAGGAGCCACATCGCCGTCGAACTTGCCATGGAGTGA
GTGCGGCCGTCACTGTGATACTTACTACCGCAGTGGCCCCCACCCCCGGC
AGCCCTGCCTTTCCTTTCACCCGCCTGTGCCGTGGAGTACAGATCACCTT
ACATCACATCGCATCACCTCACATCACCTCACAACATATCACCTCACCTC
GCATCACATCACATCACATCACCTCACATCACACCACATCACATCGCGTC
ACATCACCTCACATCACACCACATCACATCGCATCACATCACATCACGTC
GCATCACCTCACTTCACATCACCTTACATCGCACCACATCACATCACATC
ACCTCACCTCACACCACATCACATCGCATCACATCGCATCACATCACCTC
ACATCACATCGCATCACCTCGCATCAACCAACTTGGACGCTCAGGCTCCT
AGGGGAGAACTTGGATAGGAAGCGCCTTGTGGAGCTGGCTCCCGGAAAGG
CCAAGGTGAGTGATGCGATTCGATTAGATGTGATGTGATGTGATGTGGTG
CGATGTGATGTGATGTGATGTGGTGTGGTGTGGTGCGATGTGATGTGGTG
TGGTGTGATATGATGCAGCTTGGTATGTGTGGTGTGTTTGATGCTGGCTC
CCGGCAAGGCCAAGGCGAGTGATGCGATGCGATTTGATGTGGTGGGATAT
AGTGTGAGGTGATGTTATGTGGTGTGATGTGGTGTGGTATGATGTGGTGT
GGTGCAATGTGGTATCACGTGGTGTGATGTGATGCGGCTTGGTATGTTAT
GATGTGGCGTGATTGATGCTGGCTCACGGCACGGCCAAGGTGAGTGTGTG
GATGTGATGTGATGCGATCGTTGTCAAAGTTTTTCAGGTATTATAACATG
GAGAACACAGGGCGAGACGCAGTTCTCCAGATTTGGGGACACTCCTGGTT
TGAAGTACATATACCATCGTGTCTCCCCTACCCACCTAACCCGTGCCGTC
ACCGCCGAAAAAAATGTAACCGCCGAAACTGCCACCAGGCGTACGACGAG
GCGTACAGCAAGGTGCGCAATATAATGGGGGGTTTCCTGGGCCTGGATGC
GTCCGCTGCTTTGCCCCGCAACGGCGTGATGAGCCTGGCCATGAAGTTTG
GCGGGGCTTCCACCCTCCGGGAGAACTCCGGAAACAGCGGCCATAAGCCC
GGTGCGATAAGGCTGCTCGAGCAGTACAAGGTGCGTGCGGGCTTCTGGTG
CGCTGTATATGATATGACATATCGAAGTGTGTGACTCACGCCGGACAGGG
TTGCTATGAAAATCGCGCCCCCCCTGGGGGATTCGAAACCGTGACCTTCG
GGTTATAAACCCGTTCCTGGACCACTCGACTAAATGAGCGCTGACATTTG
AGTGGGTAGTGGTTCGAATGAAATTGTATTTAACGAGGCACTTGGAACTA
TGCAAAGTATACGAAGATTACAATCTCACCTGTGTGATGAAATCGAGTGT
TCCGGAGAGATTTGGTGTGATGTGATGTGATTTGATGTGATGTGAAACTA
CTGTGCAATACGCTAGAGCCAACATCACATCACATCACGTCACAAATTTC
AACGAGCAATCTCGCCTGTGTGAAATCGGGTGTTCTGGTAGATATCGTTG
TGATGTTATGTGATGTCAAGCTACTGTACATCAGAGTGAACATCACATCA
CATCACATCACATCACGTCACAAATTTCAACGAGGTACTGTACAATCTCA
CCTGCATGAAATCGGGTGTTCTGGTAGATATCGTTGTGATGTGATGTGAT
GTCAAACTACAGTACATTAGAGTGAACATTACATCACATCACGTCACAAA
TTTCAACGAGGTACCGTACAATCTCACCTGCGTGAAATCGGGTGTTGTGG
TAGATATCCTTGTGATGTGATGTGATGTCAAACTACAGTACATTAGAGTG
AACATCACGTTGTGATGTGATGTGATGTCAAGCTACAGTACATTAGAGTG
AACATCACATCACATCACATCACATCCCAGCACAAATTCTCAACGAGGTA
CTGTACAATCCCACCTGTGTGAAATCGAGTGTTCTGGTAGAGAGGGGGCG
GGCAAACCAGCGCTTGCCAGTCGATGGAAATTGATTCGGCTACTTTTTAA
GGACAAATCTAAGAGAATGATAGGCATGGTTAATAGGTTGGCTCTACGGC
ACACATTGATTACGTATGCAGGCCTGTAACCCCCAGGGTAGGCACATAGC
CCCTACTGGGTGCCCTTTTAGGCCCTTAGTTGGAGGTAATTAGGGGTACA
GTAATTAGACCTAACATGAAGGATCGGTAGGCCCTACAGTACTTAACCTT
CAAGTGCCAACCCTGGTAACCCCCGTCCCTTGCACCCCTCTCTTTTTGGC
CAATCAGGAGGTGGTGTCGAGGCAGCTCGCCCCCGTGGTCGGGGCGGGGC
AGACGTTCCTAACCGGGCAGTTGCAGCAGGCCGCCGCTTTCTGCCTGGCA
GAGATCATGGCAAATGTGAGTGTGGTGTTTCCCTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGATAGGTTAGTC
TCTTCCGACAGTTCTTGCCCCCAAAGACACAAACACGAAAACCCAACGCA
TCGCCGCGGCAGGAGAGAGTGGACAGAGGTGAAGTTGCAAAACACTGCCG
GGTACCCAAGAGTGAGCTGGACCGTGTGTGCATCACCATGGCGGTGAGTG
ATGTGATGTGATGTGATGTGATGCAATGCGATGTGATGCGATGGGGTGTG
GTGTGGTGGGATGTGGTGTGATGTGATGCGATGCAATGCGATGTGATGCG
ATGGGGGTGTGATGTGGTGTGATGCGATGTGGTGTGGTGTGATGTGGAGT
GATGTGATGTGAGGTGATGTGATGGTGATATGATGTGATCTGATGTGACG
TGGTGTGATGTGACGTGATGTGATGTAGTGCGATGCGATGTGACATGATC
AGTAATGTCATAAATAGATTGATTTGCTCAGACATTCCATCATTGGCCAC
GGACGGGCGGGGTCCTGCTCCGTCTCTGTTGGTGCGCGGTCAATGGTTTC
GGGGCTCCTGAGTGCAGCACTCGGACGTTTCGAGACATTCTCCACCCCTA
CAACTCGTGTTCTTCGACCTCGTCTCCCCTAGCCGCGTGGACAGTCCCCC
CTACAACTCGTGTTCTTCGACCTCGTCTCCCCTACCCCGTGGACAGTTTT
TACGAACGAACGGACGGTCTCGGGACCAAGGCAAGCACAACGTGAGCACA
AGGACTACTACTTCCAAGTACGAGAACACTCAATCTCACACACGTGCGAT
TGCACCTCATTACAACTTATACTACTACTTCGTATAAAGCACCTGGACAT
ATCCATTCCGTGGCATTTTACTTGTAGTTGTGGTGGTCAATGCCTTGCAA
TCCCCTGATGATGCCCCCCCCACACAGGCACTGCTCAGGATGTGGGCATT
CATTCCTTCCTGTGATGGAGTATCGAAGCAAATCAACCTATTTATTGACA
GTACTGATTTGAAAGTATTTTGATGGCATGCTGATCTATTATATCTATCG
ATGGTCGATATTCGATAGTTTGACCCATACCAATTCCAAGCAGTTGTTAA
CGCCACCCACAAAGTAAGTCGAGCCCAATAGCTATCCACTGATCGATGCT
CCAGCGCTGATTCCTGCATGCCCGCCCCCCCCCCCCCAGGACAAGTGCAA
TCTGCTCTCTAATCCCGCAGTCCAGAAGGCGTTTCCCCGGGTTACAGGGT
TGTCCTCCCCAGGCTGCGAAACCGCCTCGCCACAACACGGCCGCGGTGGG
GCAAACGCCTCCCATGCCCCCTGCACATCCCCCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGTGGCGGCGGTGGTGACGACACCATGATGGACGATG
ATGATGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig88:302769..308626+

>mRNA_S-ischiensis_contig88.20309.1 ID=mRNA_S-ischiensis_contig88.20309.1|Name=mRNA_S-ischiensis_contig88.20309.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1638bp|location=Sequence derived from alignment at S-ischiensis_contig88:302769..308626+ (Schizocladia ischiensis KU_0333)
ATGGACGTTCGCACGGTGCTTCGGGGGATGGGGGGCGAGCACAGCCAGAG
GGCGGTGAGCAAGGCCGAGGAGATGGACGTTCGCACGGTGCTTCGGGGGA
TGGGGGGCGAGCACAGCCAGAGGGCGGTGAGCAAGGCCGAGGAGGTGCTG
CGGCAGATGAAGAGCAAGTGTGGCCACCTGGGCAAGGCGGAGTCGCTCAG
GAGCCACATCGCCGTAGACTTGGCCATGGAGTGCTGCGGCAGATGAAGAG
CAAGTGTGGCCACCTGGGCAAGGCGGAGTCGCTCAGGAGCCACATCGCCG
TAGACTTGGCCATGGAGCTCCTAGGGGAGAACTTGGATAGGAAGCGCCTT
GTGGAGCTGGCTCCCGGAAAGGCCAAGGCTCCTAGGGGAGAACTTGGATA
GGAAGCGCCTTGTGGAGCTGGCTCCCGGAAAGGCCAAGGCGTACGACGAG
GCGTACAGCAAGGTGCGCAATATAATGGGGGGTTTCCTGGGCCTGGATGC
GTCCGCTGCTTTGCCCCGCAACGGCGTGATGAGCCTGGCCATGAAGTTTG
GCGGGGCTTCCACCCTCCGGGAGAACTCCGGAAACAGCGGCCATAAGCCC
GGTGCGATAAGGCTGCTCGAGCAGTACAAGGCGTACGACGAGGCGTACAG
CAAGGTGCGCAATATAATGGGGGGTTTCCTGGGCCTGGATGCGTCCGCTG
CTTTGCCCCGCAACGGCGTGATGAGCCTGGCCATGAAGTTTGGCGGGGCT
TCCACCCTCCGGGAGAACTCCGGAAACAGCGGCCATAAGCCCGGTGCGAT
AAGGCTGCTCGAGCAGTACAAGGAGGTGGTGTCGAGGCAGCTCGCCCCCG
TGGTCGGGGCGGGGCAGACGTTCCTAACCGGGCAGTTGCAGCAGGCCGCC
GCTTTCTGCCTGGCAGAGATCATGGCAAATGAGGTGGTGTCGAGGCAGCT
CGCCCCCGTGGTCGGGGCGGGGCAGACGTTCCTAACCGGGCAGTTGCAGC
AGGCCGCCGCTTTCTGCCTGGCAGAGATCATGGCAAATGAGAGAGTGGAC
AGAGGTGAAGTTGCAAAACACTGCCGGGTACCCAAGAGTGAGCTGGACCG
TGTGTGCATCACCATGGCGGAGAGAGTGGACAGAGGTGAAGTTGCAAAAC
ACTGCCGGGTACCCAAGAGTGAGCTGGACCGTGTGTGCATCACCATGGCG
GACAAGTGCAATCTGCTCTCTAATCCCGCAGTCCAGAAGGCGTTTCCCCG
GGTTACAGGGTTGTCCTCCCCAGGCTGCGAAACCGCCTCGCCACAACACG
GCCGCGGTGGGGCAAACGCCTCCCATGCCCCCTGCACATCCCCCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGGTGACGACACCAT
GATGGACGATGATGATGGCGACAAGTGCAATCTGCTCTCTAATCCCGCAG
TCCAGAAGGCGTTTCCCCGGGTTACAGGGTTGTCCTCCCCAGGCTGCGAA
ACCGCCTCGCCACAACACGGCCGCGGTGGGGCAAACGCCTCCCATGCCCC
CTGCACATCCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCG
GCGGTGGTGACGACACCATGATGGACGATGATGATGGC
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