mRNA_S-ischiensis_contig87.20257.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20257.1
Unique NamemRNA_S-ischiensis_contig87.20257.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:327692..329894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size511
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20257.1prot_S-ischiensis_contig87.20257.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 327693..329894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817349.4940743-CDS-S-ischiensis_contig87:327692..3280281622817349.4940743-CDS-S-ischiensis_contig87:327692..328028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 327693..328028 -
1695741047.2096822-CDS-S-ischiensis_contig87:327692..3280281695741047.2096822-CDS-S-ischiensis_contig87:327692..328028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 327693..328028 -
1622817349.5109591-CDS-S-ischiensis_contig87:329482..3296041622817349.5109591-CDS-S-ischiensis_contig87:329482..329604Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 329483..329604 -
1695741047.2209651-CDS-S-ischiensis_contig87:329482..3296041695741047.2209651-CDS-S-ischiensis_contig87:329482..329604Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 329483..329604 -
1622817349.5234153-CDS-S-ischiensis_contig87:329842..3298941622817349.5234153-CDS-S-ischiensis_contig87:329842..329894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 329843..329894 -
1695741047.231808-CDS-S-ischiensis_contig87:329842..3298941695741047.231808-CDS-S-ischiensis_contig87:329842..329894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 329843..329894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20257.1

>prot_S-ischiensis_contig87.20257.1 ID=prot_S-ischiensis_contig87.20257.1|Name=mRNA_S-ischiensis_contig87.20257.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
GEEGGGCGDCPGVQGQQGICVPGSEAQDGAAGGCGAWRDPCPCPLCKGPP
APLNGARQGRKGPLQGRQNPGHPRRPCSPPAQPTTPPTCWAHEPTPRWGE
PQACRRIPPRRGAIPQPTSAPHAHRPKGPGSRGCRPRPWPEGGRCAGPGP
RRATVLAWVGQCRRHCCCWD
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mRNA from alignment at S-ischiensis_contig87:327692..329894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20257.1 ID=mRNA_S-ischiensis_contig87.20257.1|Name=mRNA_S-ischiensis_contig87.20257.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2203bp|location=Sequence derived from alignment at S-ischiensis_contig87:327692..329894- (Schizocladia ischiensis KU_0333)
GGAGAAGAGGGTGGGGGATGCGGAGACTGCCCTGGAGTCCAAGGCCAGCA
AGGTGCGTAAGTTGAAGTGTCTGCACCCCTTTGCCTACAGTAGTACATCT
CGCCGAGCACTTGGCGGTCAAAAGATAACTTTAAAAGGCATGCCTCATGC
TGGTGCGCCCTGCTGCCACCATTGTACTGTACTGTACTGCAGACAAGACC
GCGGCAAACTTGCGGCTAGTGCCTCGTGGGAAAACCCCCTAGACACGCTT
ACACGCACGCACGCACACACACCCACACACAATCCTGCAGGCATCTGTGT
CCCAGGCTCTGAGGCGCAGGACGGGGCGGCTGGTGGGTGTGGAGCATGGC
GAGACCCTTGCCCTTGCCCGCTGTGTAAAGGCCCTCCAGCGCCGCTCAAC
GGAGCACGACAGGTGAGCTGACCTACTCCGGGCCTTAGCAAGTGCGAGCA
CGTAATTTACAAGCTCTTCTAGTACACTGACTAAGTTCAGAGGTTTCGAG
ACAGGTACCACACTGTACAATGTGCAATGCTACCGAGTATGTACTACTAG
TACTAAGTATGCACGAGTACTCTACTATGTACAGTAGTAGTGCATGATAA
GAGTGTGTTTGTTGGATGTAGTGATAGCCCAGCTGCGTGCCACCCTCTTC
AAGGAACCAGCATGTACAGTACATAGCATGTTGACCTTGGCTAGCGCTCG
CGCAATACGAGCACGGCAGGTCCTTTAAAGCATTACTGTACTACTAGTAT
TGCTATTTGTATGGTTGGCAACCGCAGTAGTGCGTGGTGGTGTGCACCCA
TGTCGGACCGGGGATTGCCCCGTCCTGTGTGTGCCGCAGCGAATTCTCCC
CATTGATGCCATGGGATACGTGCAAGTGCTCTCTCTCTATATATATACTT
TGAAGTACTACTGTAGTATATGCTCGTACTCGTACGTGTACATATTTTAG
AAGAAGACAACAAGCAAGCGGGAGAGAAGAGTTAAAGAGGACTTGTTCCC
ATCTGCGCGAATTTCGGGGCGCCCAACCCGGAAGCCCCTCCTTCTCTCGG
CTATGCGACTGAGAAGCCTGGTATTACATAGCACCGCGTGTGTGGACTTG
TGTTGGCCTAGTGTCCTACTATGTGCTGTAGTAGTACACTCAATTTCACA
TAATATGTACTGTAGTACTTGAAGTAGGTGGGATTGCACCTCGTCCCATT
TGTTTCAATCAGTGCCAGGTTGTGCAGCGATCCCGTGGTGCCCCTGGCCC
CCCCCTCGCGGGCCTTGCAAGTCGGTGGGAAAGTCTGTGATGAATTGGGA
CGCTGTGCAACCCTCCTTGTTGGCACTGCGGTAAGTTCATGCGTTTGCTC
CTCCGCAAATGATTCGAATGTGTTCTTGGCTACTGCTGTTGCGTACTCGT
GATGTACGCAAAAGCACTTCGCAGTACTCGAACAGCACAAGTACACACTG
CTCCATCTCGAACGAGACGCGTGTTCAATGATCTCAGGACTACGGCAAGC
GCCACGTGAGTACATATAGCCAAAGTATGGTGTAGAAAAAACGTGTGCCG
TAGTTCGATACTCCCGCTGTGCCTGCCGTATTCCAGAGACCACATACATA
CATCGACGGCCCTACGTCGAAGTACTTTACCTCTCCCCAGGTCCAAGCAG
TGAGCACCTACAGTACAGTACAGTACTGCACTTTGAAGTACATGAATACT
GTGTAGACTGTATTCACTACTTCCGGAAGCACTACAGCAAGTGCATTCGA
TTATCCGTTTCAACCTGCCCCACTGATGGCAGAACCACTCCACCTACCCG
ACCCATCGCTCCCCACTGCCAACCGCCAACACCCCCACCCGCCCCACCAC
CCATCCACCACCACAGGGCAGGAAAGGCCCTCTCCAAGGCCGTCAAAACC
CTGGCCACCCGAGACGACCTTGTTCGCCGCCCGCACAACCAACAACGCCT
CCCACCTGCTGGGCCCACGAGCCCACTCCCCGATGGGGAGAGCCGCAGGC
CTGCCGACGCATCCCCCCCCGGAGAGGGGCCATACCCCAGCCCACAAGCG
CCCCCCACGCCCACAGGCCCAAGGGCCCGGGGTCCCGGGGATGCAGGCCC
AGGCCCTGGCCCGAGGGAGGGCGCTGCGCCGGGCCTGGGCCCAGGCGGGC
CACCGTTCTCGCCTGGGTCGGCCAGTGCCGCCGTCACTGCTGTTGCTGGG
ATT
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Coding sequence (CDS) from alignment at S-ischiensis_contig87:327692..329894-

>mRNA_S-ischiensis_contig87.20257.1 ID=mRNA_S-ischiensis_contig87.20257.1|Name=mRNA_S-ischiensis_contig87.20257.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig87:327692..329894- (Schizocladia ischiensis KU_0333)
GGAGAAGAGGGTGGGGGATGCGGAGACTGCCCTGGAGTCCAAGGCCAGCA
AGGGAGAAGAGGGTGGGGGATGCGGAGACTGCCCTGGAGTCCAAGGCCAG
CAAGGCATCTGTGTCCCAGGCTCTGAGGCGCAGGACGGGGCGGCTGGTGG
GTGTGGAGCATGGCGAGACCCTTGCCCTTGCCCGCTGTGTAAAGGCCCTC
CAGCGCCGCTCAACGGAGCACGACAGGCATCTGTGTCCCAGGCTCTGAGG
CGCAGGACGGGGCGGCTGGTGGGTGTGGAGCATGGCGAGACCCTTGCCCT
TGCCCGCTGTGTAAAGGCCCTCCAGCGCCGCTCAACGGAGCACGACAGGG
CAGGAAAGGCCCTCTCCAAGGCCGTCAAAACCCTGGCCACCCGAGACGAC
CTTGTTCGCCGCCCGCACAACCAACAACGCCTCCCACCTGCTGGGCCCAC
GAGCCCACTCCCCGATGGGGAGAGCCGCAGGCCTGCCGACGCATCCCCCC
CCGGAGAGGGGCCATACCCCAGCCCACAAGCGCCCCCCACGCCCACAGGC
CCAAGGGCCCGGGGTCCCGGGGATGCAGGCCCAGGCCCTGGCCCGAGGGA
GGGCGCTGCGCCGGGCCTGGGCCCAGGCGGGCCACCGTTCTCGCCTGGGT
CGGCCAGTGCCGCCGTCACTGCTGTTGCTGGGATGGCAGGAAAGGCCCTC
TCCAAGGCCGTCAAAACCCTGGCCACCCGAGACGACCTTGTTCGCCGCCC
GCACAACCAACAACGCCTCCCACCTGCTGGGCCCACGAGCCCACTCCCCG
ATGGGGAGAGCCGCAGGCCTGCCGACGCATCCCCCCCCGGAGAGGGGCCA
TACCCCAGCCCACAAGCGCCCCCCACGCCCACAGGCCCAAGGGCCCGGGG
TCCCGGGGATGCAGGCCCAGGCCCTGGCCCGAGGGAGGGCGCTGCGCCGG
GCCTGGGCCCAGGCGGGCCACCGTTCTCGCCTGGGTCGGCCAGTGCCGCC
GTCACTGCTGTTGCTGGGAT
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