prot_S-ischiensis_contig86.20216.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig86.20216.1
Unique Nameprot_S-ischiensis_contig86.20216.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length126
Homology
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BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Match: A0A2Z4MT98_SACJA (HMG-box containing protein isoform 2 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MT98_SACJA)

HSP 1 Score: 115 bits (288), Expect = 2.900e-29
Identity = 61/105 (58.10%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:    1 MKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTHFAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKERYYQDA 105
            M AYRP +GYER APRIN+PKG  + +   +      A    RP PAYTHFAHQ++ GVLSS S  AK LMSK F QRW  MP EE  LY ELE ADKERY ++A
Sbjct:  142 MSAYRPPEGYERIAPRINVPKGFSTVSWDPDVIAGTTAQPCRRPWPAYTHFAHQEKIGVLSSRSNRAKTLMSKAFGQRWHGMPYEETELYKELEGADKERYEKEA 246
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BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 115 bits (288), Expect = 4.950e-28
Identity = 61/105 (58.10%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:    1 MKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTHFAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKERYYQDA 105
            M AYRP +GYER APRIN+PKG  + +   +      A    RP PAYTHFAHQ++ GVLSS S  AK LMSK F QRW  MP EE  LY ELE ADKERY ++A
Sbjct:  307 MSAYRPPEGYERIAPRINVPKGFSTVSWDPDVIAGTTAQPCRRPWPAYTHFAHQEKIGVLSSRSNRAKTLMSKAFGQRWHGMPYEETELYKELEGADKERYEKEA 411
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z4MT98_SACJA2.900e-2958.10HMG-box containing protein isoform 2 n=1 Tax=Sacch... [more]
A0A2Z4MTA2_SACJA4.950e-2858.10HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 40..114
e-value: 7.4E-8
score: 34.7
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 42..108
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 45..109
e-value: 2.9E-5
score: 24.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 41..109
score: 9.77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:622571..623656 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20216.1mRNA_S-ischiensis_contig86.20216.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig86 622567..624592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig86.20216.1 ID=prot_S-ischiensis_contig86.20216.1|Name=mRNA_S-ischiensis_contig86.20216.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MKAYRPTQGYEREAPRINIPKGGDSKALALEFDTPLAAMYLPRPKPAYTH
FAHQDRRGVLSSGSVPAKALMSKTFAQRWQAMPSEEVTLYHELEYADKER
YYQDAKTHEDHTSTASGLQGQREIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom