mRNA_S-ischiensis_contig86.20184.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20184.1
Unique NamemRNA_S-ischiensis_contig86.20184.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:105501..107078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1097
Cds size1008
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20184.1prot_S-ischiensis_contig86.20184.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 105501..106989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.4129703-CDS-S-ischiensis_contig86:105500..1060701622817345.4129703-CDS-S-ischiensis_contig86:105500..106070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 105501..106070 -
1695741044.1706088-CDS-S-ischiensis_contig86:105500..1060701695741044.1706088-CDS-S-ischiensis_contig86:105500..106070Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 105501..106070 -
1622817345.424201-CDS-S-ischiensis_contig86:106551..1069891622817345.424201-CDS-S-ischiensis_contig86:106551..106989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 106552..106989 -
1695741044.1826198-CDS-S-ischiensis_contig86:106551..1069891695741044.1826198-CDS-S-ischiensis_contig86:106551..106989Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 106552..106989 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.4349127-UTR-S-ischiensis_contig86:106989..1070781622817345.4349127-UTR-S-ischiensis_contig86:106989..107078Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 106990..107078 -
1695741044.1933537-UTR-S-ischiensis_contig86:106989..1070781695741044.1933537-UTR-S-ischiensis_contig86:106989..107078Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 106990..107078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20184.1

>prot_S-ischiensis_contig86.20184.1 ID=prot_S-ischiensis_contig86.20184.1|Name=mRNA_S-ischiensis_contig86.20184.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=336bp
MSNCSAFVCTFTSHHITSHHTRTHTSTPPLARTPSQVRQRVLGLALAGLD
DDDERDVDDYHHDLDEYHQHFHHDRHLLQHQAHQHLCSHGSSPGVGSSVG
VPGAVVSGAGDEGKAGVARSSLSLKSSFSAGISGDSFSRLGQRLVQTPQE
HPPQQAGGVVPGRKGVDEWGQQQQTPLAASSTASSVPDAAAPATAAAAAA
AAAAATMTPAATTTTPSSSTFTPSMVVDLGARLARSESVQRAVFQEMSRM
VNLDNLPRELVSPPASSSPSAASSPSSSAAASAFLASSPAAAAAVSPPSA
AATASQGASPVAPPTQASARDDDSPPLEGSLGGAGA
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mRNA from alignment at S-ischiensis_contig86:105501..107078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20184.1 ID=mRNA_S-ischiensis_contig86.20184.1|Name=mRNA_S-ischiensis_contig86.20184.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1578bp|location=Sequence derived from alignment at S-ischiensis_contig86:105501..107078- (Schizocladia ischiensis KU_0333)
GCGGCAACGGGTGCTGGGTCTGGCGCTGGCCGGCTTGGGCGACGATGGCA
CATATCCACACACACACAATCACATTGTGATGTGATGTGATGTCAAACTG
CAGTGCTTTCGTGTGCACATTCACATCACACCACATCACATCACATCACA
CGCGCACACACACGTCCACACCTCCGCTTGCACGCACGCCCTCCCAGGTG
CGGCAACGGGTGCTGGGTCTGGCGCTGGCTGGCCTGGACGATGACGACGA
AAGAGACGTGGACGATTACCACCACGACCTCGATGAATACCACCAGCACT
TCCACCATGACCGCCACCTCCTCCAGCACCAGGCGCACCAACACCTTTGT
AGTCACGGCAGCAGCCCCGGGGTGGGCTCCTCGGTGGGGGTGCCAGGAGC
AGTAGTGTCCGGGGCTGGGGATGAAGGCAAGGCGGGCGTTGCGAGGTCCT
CCTTGTCCTTGAAGTCCTCCTTCAGCGCCGGCATCTCGGGCGACTCCTTC
TCCAGGCTGGGGCAGCGTCTCGTCCAGGTGAGAGTGGTGGTGGTGGTGGT
GGCCGTGGTGGTGGCCGTTGGGTGTGCTGGGGGCGACTTCAACAGGGGCA
AGTACTGTCGAAACACCTCGTCTCATGATAGCACGGTGTTCCTATTGCCG
CCGTTATGGAGAGGGCAGTGACTGCCAGAGAGGCCTGGGCCTGTGCTGGC
AATGGTAGAAGCAGCAAAAACCCCTATGGTGTAATCAAGGGAGCTACTGT
AGAGATTCTCCTAGACTGCGAGTGCTGCAAGGGGTTGTAGAGGAGTCTTG
TATGAGGGGACAAGATGCCATGCGTGTCGTTACAACATCATGGATGCACA
TGTTCCGACAAGTACCATCCTGGATGCTTGCTTTTGCCCGCCTGCCCACC
CACTACCCGGGCCCACCATCCTGACCCCGCCCTGCCTGCCCACCCTCTCG
CCTCTGCTGTGCTCCCCCCTTCTTCCCTACCTGGCGGGGATATCGGGTGA
GAGAACAGACACCCCAGGAACACCCGCCGCAGCAGGCAGGGGGAGTCGTG
CCGGGGCGGAAGGGTGTCGACGAGTGGGGGCAACAGCAGCAGACTCCTCT
GGCTGCTTCCTCCACGGCGTCCTCCGTGCCTGACGCGGCCGCGCCCGCGA
CGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGACAATGACTCCGGCG
GCCACCACAACAACCCCCTCCTCCTCCACCTTCACGCCCTCCATGGTGGT
GGACCTCGGGGCCCGCCTGGCCAGGAGCGAGAGCGTCCAGAGGGCGGTCT
TCCAGGAGATGAGCAGGATGGTCAACCTTGACAACCTCCCCCGCGAGCTC
GTGTCCCCCCCCGCTTCTTCCTCCCCTTCTGCCGCCTCCTCCCCGTCTTC
TTCTGCCGCCGCCTCCGCCTTCTTGGCTTCTTCGCCCGCGGCGGCGGCCG
CCGTCTCGCCGCCCTCCGCTGCCGCCACCGCCTCCCAGGGCGCATCCCCG
GTGGCCCCCCCGACCCAGGCCTCGGCCCGCGATGATGATTCTCCCCCGCT
GGAGGGGAGTCTGGGAGGGGCGGGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:105501..107078-

>mRNA_S-ischiensis_contig86.20184.1 ID=mRNA_S-ischiensis_contig86.20184.1|Name=mRNA_S-ischiensis_contig86.20184.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2016bp|location=Sequence derived from alignment at S-ischiensis_contig86:105501..107078- (Schizocladia ischiensis KU_0333)
ATGTCAAACTGCAGTGCTTTCGTGTGCACATTCACATCACACCACATCAC
ATCACATCACACGCGCACACACACGTCCACACCTCCGCTTGCACGCACGC
CCTCCCAGGTGCGGCAACGGGTGCTGGGTCTGGCGCTGGCTGGCCTGGAC
GATGACGACGAAAGAGACGTGGACGATTACCACCACGACCTCGATGAATA
CCACCAGCACTTCCACCATGACCGCCACCTCCTCCAGCACCAGGCGCACC
AACACCTTTGTAGTCACGGCAGCAGCCCCGGGGTGGGCTCCTCGGTGGGG
GTGCCAGGAGCAGTAGTGTCCGGGGCTGGGGATGAAGGCAAGGCGGGCGT
TGCGAGGTCCTCCTTGTCCTTGAAGTCCTCCTTCAGCGCCGGCATCTCGG
GCGACTCCTTCTCCAGGCTGGGGCAGCGTCTCGTCCAGATGTCAAACTGC
AGTGCTTTCGTGTGCACATTCACATCACACCACATCACATCACATCACAC
GCGCACACACACGTCCACACCTCCGCTTGCACGCACGCCCTCCCAGGTGC
GGCAACGGGTGCTGGGTCTGGCGCTGGCTGGCCTGGACGATGACGACGAA
AGAGACGTGGACGATTACCACCACGACCTCGATGAATACCACCAGCACTT
CCACCATGACCGCCACCTCCTCCAGCACCAGGCGCACCAACACCTTTGTA
GTCACGGCAGCAGCCCCGGGGTGGGCTCCTCGGTGGGGGTGCCAGGAGCA
GTAGTGTCCGGGGCTGGGGATGAAGGCAAGGCGGGCGTTGCGAGGTCCTC
CTTGTCCTTGAAGTCCTCCTTCAGCGCCGGCATCTCGGGCGACTCCTTCT
CCAGGCTGGGGCAGCGTCTCGTCCAGACACCCCAGGAACACCCGCCGCAG
CAGGCAGGGGGAGTCGTGCCGGGGCGGAAGGGTGTCGACGAGTGGGGGCA
ACAGCAGCAGACTCCTCTGGCTGCTTCCTCCACGGCGTCCTCCGTGCCTG
ACGCGGCCGCGCCCGCGACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCG
GCGACAATGACTCCGGCGGCCACCACAACAACCCCCTCCTCCTCCACCTT
CACGCCCTCCATGGTGGTGGACCTCGGGGCCCGCCTGGCCAGGAGCGAGA
GCGTCCAGAGGGCGGTCTTCCAGGAGATGAGCAGGATGGTCAACCTTGAC
AACCTCCCCCGCGAGCTCGTGTCCCCCCCCGCTTCTTCCTCCCCTTCTGC
CGCCTCCTCCCCGTCTTCTTCTGCCGCCGCCTCCGCCTTCTTGGCTTCTT
CGCCCGCGGCGGCGGCCGCCGTCTCGCCGCCCTCCGCTGCCGCCACCGCC
TCCCAGGGCGCATCCCCGGTGGCCCCCCCGACCCAGGCCTCGGCCCGCGA
TGATGATTCTCCCCCGCTGGAGGGGAGTCTGGGAGGGGCGGGGGCCACAC
CCCAGGAACACCCGCCGCAGCAGGCAGGGGGAGTCGTGCCGGGGCGGAAG
GGTGTCGACGAGTGGGGGCAACAGCAGCAGACTCCTCTGGCTGCTTCCTC
CACGGCGTCCTCCGTGCCTGACGCGGCCGCGCCCGCGACGGCGGCGGCGG
CGGCGGCGGCGGCGGCAGCGGCGACAATGACTCCGGCGGCCACCACAACA
ACCCCCTCCTCCTCCACCTTCACGCCCTCCATGGTGGTGGACCTCGGGGC
CCGCCTGGCCAGGAGCGAGAGCGTCCAGAGGGCGGTCTTCCAGGAGATGA
GCAGGATGGTCAACCTTGACAACCTCCCCCGCGAGCTCGTGTCCCCCCCC
GCTTCTTCCTCCCCTTCTGCCGCCTCCTCCCCGTCTTCTTCTGCCGCCGC
CTCCGCCTTCTTGGCTTCTTCGCCCGCGGCGGCGGCCGCCGTCTCGCCGC
CCTCCGCTGCCGCCACCGCCTCCCAGGGCGCATCCCCGGTGGCCCCCCCG
ACCCAGGCCTCGGCCCGCGATGATGATTCTCCCCCGCTGGAGGGGAGTCT
GGGAGGGGCGGGGGCC
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