mRNA_S-ischiensis_contig85.20142.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20142.1
Unique NamemRNA_S-ischiensis_contig85.20142.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:312790..314298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1509
Cds size1509
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.4790478-CDS-S-ischiensis_contig85:312789..3142981622817340.4790478-CDS-S-ischiensis_contig85:312789..314298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 312790..314298 +
1695741040.246555-CDS-S-ischiensis_contig85:312789..3142981695741040.246555-CDS-S-ischiensis_contig85:312789..314298Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 312790..314298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20142.1prot_S-ischiensis_contig85.20142.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 312790..314298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20142.1

>prot_S-ischiensis_contig85.20142.1 ID=prot_S-ischiensis_contig85.20142.1|Name=mRNA_S-ischiensis_contig85.20142.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=503bp
NGGVACLWVKLSCLPQPRPACSGPADQERNGPGAVVPHACGARLPPPVGV
LPGRGPSLELWRRGETLLPGAAGAKATAPPPHEGDVVMTVTGRLERLAPP
ELVLQPWSQVQLEDPPRAAAELRLPPAGGGGSHEEGRERRAQAAATKPPP
LQTPPPPPYFALLRRVRASLSRHSAALSERLARAAMGATAPRAPGTTTPN
PGPSCSVEPGRATRASCAGGDGDDGGSSPEAGLVFLALLHADGCSCAPGG
PEPGCGGGHAKARGGCASAPLTCLDPVCAVRGPGLPPPPLPPPPPPSETM
PGCRGPSSSSSSSGSPPQDPVSAATGRGGPSHGPAGASASISACSDITAS
DEHQAALADGTTLEGGRTDASAPSGGHVDNHHHRLPASSSLGHQSSPPPS
PPTRLRLLPPMDYTDHPLPTSGLGQRSPPLPPGPTQLPRLLPPTDCTAAR
DTAWLLPQVQCARQLCRLCGQVALGLERRLASLEDKIRSRCRSGGGGGGG
SGG
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mRNA from alignment at S-ischiensis_contig85:312790..314298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20142.1 ID=mRNA_S-ischiensis_contig85.20142.1|Name=mRNA_S-ischiensis_contig85.20142.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1509bp|location=Sequence derived from alignment at S-ischiensis_contig85:312790..314298+ (Schizocladia ischiensis KU_0333)
AATGGCGGTGTGGCTTGCCTGTGGGTGAAGTTGTCGTGTCTGCCACAGCC
GCGCCCAGCCTGCAGCGGACCAGCAGACCAGGAGCGTAATGGGCCCGGGG
CTGTTGTTCCCCACGCGTGTGGTGCCCGGCTACCACCCCCCGTGGGCGTG
CTGCCGGGCCGGGGCCCGTCCTTGGAGTTGTGGCGCCGGGGGGAGACTTT
GTTGCCTGGGGCGGCAGGGGCAAAGGCAACGGCGCCTCCTCCTCACGAGG
GGGACGTGGTGATGACGGTGACGGGCCGGCTGGAACGCCTGGCCCCACCG
GAGCTCGTGCTGCAACCCTGGAGCCAAGTTCAACTTGAAGATCCCCCTCG
TGCGGCCGCGGAGCTCCGGCTCCCTCCCGCCGGAGGAGGAGGGTCGCACG
AGGAGGGCCGCGAGAGGCGGGCTCAGGCTGCTGCGACAAAACCTCCCCCA
TTACAAACACCTCCCCCACCCCCGTACTTTGCCCTCCTGCGGCGGGTCAG
GGCCAGCCTGAGCCGTCACAGCGCCGCCCTGTCTGAGCGCTTGGCTAGGG
CAGCCATGGGCGCTACAGCCCCCCGGGCCCCCGGCACCACCACGCCCAAC
CCGGGCCCGAGCTGCAGCGTCGAGCCCGGCCGTGCCACCCGTGCGTCATG
CGCCGGCGGAGATGGCGATGATGGCGGCTCCTCGCCAGAAGCTGGGTTGG
TGTTCTTGGCCCTGCTGCATGCTGACGGCTGCAGCTGCGCCCCTGGTGGC
CCCGAGCCTGGGTGCGGGGGGGGGCATGCCAAGGCACGGGGGGGGTGCGC
CAGTGCGCCGCTGACCTGCCTAGACCCTGTGTGTGCTGTACGAGGACCAG
GACTGCCGCCTCCGCCGCTGCCGCCGCCGCCGCCACCCTCTGAAACCATG
CCCGGTTGCCGCGGACCCAGCAGCAGCAGCAGCAGCAGCGGCAGCCCCCC
CCAGGACCCTGTCAGTGCTGCGACTGGCCGTGGTGGGCCTTCGCATGGGC
CTGCCGGTGCCAGCGCCAGCATCAGTGCCTGTTCGGACATCACGGCCAGT
GATGAGCACCAGGCGGCACTGGCAGACGGCACCACCTTGGAAGGCGGCAG
GACCGACGCTTCAGCACCTTCAGGAGGCCACGTGGACAATCACCATCACC
GCTTGCCAGCGAGCAGCAGCCTGGGTCATCAGAGCTCACCCCCCCCTTCC
CCGCCGACCCGGCTGAGGCTGCTGCCTCCTATGGACTACACCGATCACCC
CTTGCCCACGAGCGGCCTTGGTCAGAGGTCACCCCCTCTCCCCCCCGGCC
CAACCCAGCTGCCTCGGCTGCTGCCTCCTACGGACTGCACAGCTGCGCGG
GACACCGCGTGGCTCTTGCCGCAAGTGCAGTGCGCCCGCCAGCTGTGCCG
GCTGTGCGGCCAGGTGGCCCTGGGGCTGGAACGCCGCCTGGCGTCCCTGG
AGGACAAAATCCGCAGCCGATGCCGCAGCGGTGGCGGCGGCGGGGGCGGC
AGCGGGGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:312790..314298+

>mRNA_S-ischiensis_contig85.20142.1 ID=mRNA_S-ischiensis_contig85.20142.1|Name=mRNA_S-ischiensis_contig85.20142.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3018bp|location=Sequence derived from alignment at S-ischiensis_contig85:312790..314298+ (Schizocladia ischiensis KU_0333)
AATGGCGGTGTGGCTTGCCTGTGGGTGAAGTTGTCGTGTCTGCCACAGCC
GCGCCCAGCCTGCAGCGGACCAGCAGACCAGGAGCGTAATGGGCCCGGGG
CTGTTGTTCCCCACGCGTGTGGTGCCCGGCTACCACCCCCCGTGGGCGTG
CTGCCGGGCCGGGGCCCGTCCTTGGAGTTGTGGCGCCGGGGGGAGACTTT
GTTGCCTGGGGCGGCAGGGGCAAAGGCAACGGCGCCTCCTCCTCACGAGG
GGGACGTGGTGATGACGGTGACGGGCCGGCTGGAACGCCTGGCCCCACCG
GAGCTCGTGCTGCAACCCTGGAGCCAAGTTCAACTTGAAGATCCCCCTCG
TGCGGCCGCGGAGCTCCGGCTCCCTCCCGCCGGAGGAGGAGGGTCGCACG
AGGAGGGCCGCGAGAGGCGGGCTCAGGCTGCTGCGACAAAACCTCCCCCA
TTACAAACACCTCCCCCACCCCCGTACTTTGCCCTCCTGCGGCGGGTCAG
GGCCAGCCTGAGCCGTCACAGCGCCGCCCTGTCTGAGCGCTTGGCTAGGG
CAGCCATGGGCGCTACAGCCCCCCGGGCCCCCGGCACCACCACGCCCAAC
CCGGGCCCGAGCTGCAGCGTCGAGCCCGGCCGTGCCACCCGTGCGTCATG
CGCCGGCGGAGATGGCGATGATGGCGGCTCCTCGCCAGAAGCTGGGTTGG
TGTTCTTGGCCCTGCTGCATGCTGACGGCTGCAGCTGCGCCCCTGGTGGC
CCCGAGCCTGGGTGCGGGGGGGGGCATGCCAAGGCACGGGGGGGGTGCGC
CAGTGCGCCGCTGACCTGCCTAGACCCTGTGTGTGCTGTACGAGGACCAG
GACTGCCGCCTCCGCCGCTGCCGCCGCCGCCGCCACCCTCTGAAACCATG
CCCGGTTGCCGCGGACCCAGCAGCAGCAGCAGCAGCAGCGGCAGCCCCCC
CCAGGACCCTGTCAGTGCTGCGACTGGCCGTGGTGGGCCTTCGCATGGGC
CTGCCGGTGCCAGCGCCAGCATCAGTGCCTGTTCGGACATCACGGCCAGT
GATGAGCACCAGGCGGCACTGGCAGACGGCACCACCTTGGAAGGCGGCAG
GACCGACGCTTCAGCACCTTCAGGAGGCCACGTGGACAATCACCATCACC
GCTTGCCAGCGAGCAGCAGCCTGGGTCATCAGAGCTCACCCCCCCCTTCC
CCGCCGACCCGGCTGAGGCTGCTGCCTCCTATGGACTACACCGATCACCC
CTTGCCCACGAGCGGCCTTGGTCAGAGGTCACCCCCTCTCCCCCCCGGCC
CAACCCAGCTGCCTCGGCTGCTGCCTCCTACGGACTGCACAGCTGCGCGG
GACACCGCGTGGCTCTTGCCGCAAGTGCAGTGCGCCCGCCAGCTGTGCCG
GCTGTGCGGCCAGGTGGCCCTGGGGCTGGAACGCCGCCTGGCGTCCCTGG
AGGACAAAATCCGCAGCCGATGCCGCAGCGGTGGCGGCGGCGGGGGCGGC
AGCGGGGGTAATGGCGGTGTGGCTTGCCTGTGGGTGAAGTTGTCGTGTCT
GCCACAGCCGCGCCCAGCCTGCAGCGGACCAGCAGACCAGGAGCGTAATG
GGCCCGGGGCTGTTGTTCCCCACGCGTGTGGTGCCCGGCTACCACCCCCC
GTGGGCGTGCTGCCGGGCCGGGGCCCGTCCTTGGAGTTGTGGCGCCGGGG
GGAGACTTTGTTGCCTGGGGCGGCAGGGGCAAAGGCAACGGCGCCTCCTC
CTCACGAGGGGGACGTGGTGATGACGGTGACGGGCCGGCTGGAACGCCTG
GCCCCACCGGAGCTCGTGCTGCAACCCTGGAGCCAAGTTCAACTTGAAGA
TCCCCCTCGTGCGGCCGCGGAGCTCCGGCTCCCTCCCGCCGGAGGAGGAG
GGTCGCACGAGGAGGGCCGCGAGAGGCGGGCTCAGGCTGCTGCGACAAAA
CCTCCCCCATTACAAACACCTCCCCCACCCCCGTACTTTGCCCTCCTGCG
GCGGGTCAGGGCCAGCCTGAGCCGTCACAGCGCCGCCCTGTCTGAGCGCT
TGGCTAGGGCAGCCATGGGCGCTACAGCCCCCCGGGCCCCCGGCACCACC
ACGCCCAACCCGGGCCCGAGCTGCAGCGTCGAGCCCGGCCGTGCCACCCG
TGCGTCATGCGCCGGCGGAGATGGCGATGATGGCGGCTCCTCGCCAGAAG
CTGGGTTGGTGTTCTTGGCCCTGCTGCATGCTGACGGCTGCAGCTGCGCC
CCTGGTGGCCCCGAGCCTGGGTGCGGGGGGGGGCATGCCAAGGCACGGGG
GGGGTGCGCCAGTGCGCCGCTGACCTGCCTAGACCCTGTGTGTGCTGTAC
GAGGACCAGGACTGCCGCCTCCGCCGCTGCCGCCGCCGCCGCCACCCTCT
GAAACCATGCCCGGTTGCCGCGGACCCAGCAGCAGCAGCAGCAGCAGCGG
CAGCCCCCCCCAGGACCCTGTCAGTGCTGCGACTGGCCGTGGTGGGCCTT
CGCATGGGCCTGCCGGTGCCAGCGCCAGCATCAGTGCCTGTTCGGACATC
ACGGCCAGTGATGAGCACCAGGCGGCACTGGCAGACGGCACCACCTTGGA
AGGCGGCAGGACCGACGCTTCAGCACCTTCAGGAGGCCACGTGGACAATC
ACCATCACCGCTTGCCAGCGAGCAGCAGCCTGGGTCATCAGAGCTCACCC
CCCCCTTCCCCGCCGACCCGGCTGAGGCTGCTGCCTCCTATGGACTACAC
CGATCACCCCTTGCCCACGAGCGGCCTTGGTCAGAGGTCACCCCCTCTCC
CCCCCGGCCCAACCCAGCTGCCTCGGCTGCTGCCTCCTACGGACTGCACA
GCTGCGCGGGACACCGCGTGGCTCTTGCCGCAAGTGCAGTGCGCCCGCCA
GCTGTGCCGGCTGTGCGGCCAGGTGGCCCTGGGGCTGGAACGCCGCCTGG
CGTCCCTGGAGGACAAAATCCGCAGCCGATGCCGCAGCGGTGGCGGCGGC
GGGGGCGGCAGCGGGGGT
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