mRNA_S-ischiensis_contig84.20103.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20103.1
Unique NamemRNA_S-ischiensis_contig84.20103.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 7.880e-35
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 3 
Query:    3 DPRAMATNIVVRTRLWAEYFNNTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSDVQQRMAAVTRQIFAGGHLQERIEAMRTAVQVAP 317
            DPRA   N+ V+TRLWAEYFNNTLRCWE LLDPF+C VL+E+S+RRGAGL V+ARCPLHVNVTAALLDTLSD+Q++M  +  ++ A  + + R+E +R A Q AP
Sbjct: 4058 DPRAAVMNVTVQTRLWAEYFNNTLRCWEALLDPFRCDVLAESSTRRGAGLMVKARCPLHVNVTAALLDTLSDMQEQMTRIFNELDAE-NFRGRVEVLRVA-QTAP 4160
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: A0A6H5L016_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L016_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.330e-34
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 3 
Query:    3 DPRAMATNIVVRTRLWAEYFNNTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSDVQQRMAAVTRQIFAGGHLQERIEAMRTAVQVAP 317
            DPRA   N+ V+TRLWAEYFNNTLRCWE LLDPF+C VL+E+S+RRGAGL V+ARCPLHVNVTAALLDTLSD+Q++M  +  ++ A    + R+E +R A Q AP
Sbjct:  778 DPRAAVMNVTVQTRLWAEYFNNTLRCWEALLDPFRCDVLAESSTRRGAGLMVKARCPLHVNVTAALLDTLSDMQEQMTRIFNELDAES-FRGRVEILRVA-QTAP 880
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.210e-14
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:    3 DPRAMATNIVVRTRLWAEYFNNTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTL 212
             P + + N+ +  RLW++YFN  L+CWEPLL+P+    L E ++ RG GLT+R+ CPLHV V++ALL TL
Sbjct: 2401 QPSSWSLNVSLHARLWSDYFNIKLKCWEPLLEPYAFRALYEDANDRGKGLTLRSYCPLHVIVSSALLQTL 2470
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: A0A7S2UE63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE63_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.550e-11
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 3 
Query:   27 IVVRTRLWAEYFN-NTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSDVQQRMAAVTRQIFAGGHLQERIEAMRT 299
            + V    W +YF     R WEPL++P++C++L E SS RG G+T  A  P H NVT ALL+TL +     +     IF     +  IE   T
Sbjct: 2923 VAVDAHFWCDYFKLGVTRSWEPLVEPYKCLILYEKSSSRGQGVTFTAHNPFHFNVTGALLETLDEAASSFSTFWSNIFGSPSPETAIETNNT 3014
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: A0A7R9UEG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.470e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 3 
Query:   18 ATNIVVRTRLWAEYFNNTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSDVQQRMAAV 242
            A N++V+    AEYFNN LRCWE L++PF   VL E  +RRG G+ +     +H+N + ALLDTL D  +  +AV
Sbjct:  699 AKNVIVQVVSGAEYFNNRLRCWEQLIEPFAFEVLIERCARRGFGMVLDVPGTVHINASTALLDTLDDAIRIASAV 773
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: A0A7S4MN01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MN01_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.970e-10
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:   30 VVRTRLWAEYFN-NTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSDVQQRMAAVTRQIF 257
            VV   +W ++F     R WEPL++P+  +VL E S++RG G+T  + CP HVNV+ +LL+TL D  +   ++   +F
Sbjct:  217 VVDAHVWVDFFKLGATRSWEPLVEPYNFMVLYEKSAKRGKGMTFTSDCPFHVNVSGSLLETLDDTIESFTSLADGVF 293
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS)

HSP 1 Score: 64.7 bits (156), Expect = 1.140e-8
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:   45 LWAEYFN-NTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSD 218
            ++ +YF     R WEP ++P +C+VL E S  RG GLT+   CPLH+N+T AL++TL D
Sbjct: 2653 VFVDYFKLGATRNWEPFVEPVRCLVLHEKSDSRGKGLTLNIDCPLHLNITGALIETLDD 2711
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BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Match: K0SGL5_THAOC (PDZ domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL5_THAOC)

HSP 1 Score: 62.0 bits (149), Expect = 9.300e-8
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 3 
Query:    9 RAMATNIVVRTRLWAEYFNNTL-RCWEPLLDPFQCVVLSETSSRRGAGLTVRARCPLHVNVTAALLDTLSD 218
            RA      V + L+ +YF   L R WEPL++PF  ++L E S +RG G+T  + CPLH+N ++AL++T+ D
Sbjct: 1571 RADELQASVESTLYLDYFKLGLTRNWEPLVEPFHFLILYEKSKKRGDGVTFSSDCPLHLNFSSALVETIDD 1641
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI7.880e-3564.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L016_9PHAE1.330e-3464.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TRD9_9STRA4.210e-1450.00Vacuolar protein sorting-associated protein 13 fam... [more]
A0A7S2UE63_9STRA2.550e-1138.04Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9UEG4_9STRA3.470e-1146.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4MN01_9STRA3.970e-1038.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8CBY6_THAPS1.140e-847.46Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0SGL5_THAOC9.300e-842.25PDZ domain-containing protein (Fragment) n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:666597..667189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue5.6e-29
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size579
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.9980016-UTR-S-ischiensis_contig84:666596..6666101622817338.9980016-UTR-S-ischiensis_contig84:666596..666610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 666597..666610 +
1695741039.3392324-UTR-S-ischiensis_contig84:666596..6666101695741039.3392324-UTR-S-ischiensis_contig84:666596..666610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 666597..666610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.0099053-CDS-S-ischiensis_contig84:666610..6671891622817339.0099053-CDS-S-ischiensis_contig84:666610..667189Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 666611..667189 +
1695741039.3567002-CDS-S-ischiensis_contig84:666610..6671891695741039.3567002-CDS-S-ischiensis_contig84:666610..667189Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 666611..667189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20103.1prot_S-ischiensis_contig84.20103.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 666611..667189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20103.1

>prot_S-ischiensis_contig84.20103.1 ID=prot_S-ischiensis_contig84.20103.1|Name=mRNA_S-ischiensis_contig84.20103.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=193bp
MATNIVVRTRLWAEYFNNTLRCWEPLLDPFQCVVLSETSSRRGAGLTVRA
RCPLHVNVTAALLDTLSDVQQRMAAVTRQIFAGGHLQERIEAMRTAVQVA
PTTGGGGDGGGGGGGGRSAAAPFAGLADRYWHRALDEYRETFRPWEGISD
GQLVAAPPPVRLHVAEAAAAVLGGLGPQQPPGLGPGFVMPGEG
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mRNA from alignment at S-ischiensis_contig84:666597..667189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20103.1 ID=mRNA_S-ischiensis_contig84.20103.1|Name=mRNA_S-ischiensis_contig84.20103.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=593bp|location=Sequence derived from alignment at S-ischiensis_contig84:666597..667189+ (Schizocladia ischiensis KU_0333)
CGGACCCGCGGGCCATGGCCACCAATATAGTGGTGCGAACGCGGCTGTGG
GCGGAGTACTTCAACAACACGCTGCGGTGCTGGGAGCCCTTACTGGACCC
CTTCCAGTGTGTGGTGCTCTCGGAGACCTCCTCCCGCCGGGGGGCCGGCT
TGACGGTGCGCGCGCGCTGCCCTTTGCACGTGAACGTCACCGCCGCGCTC
CTCGACACGCTCTCGGACGTCCAGCAGCGCATGGCCGCCGTCACCCGGCA
GATCTTCGCCGGCGGCCACCTCCAGGAGCGCATCGAGGCCATGCGAACCG
CCGTTCAGGTGGCGCCGACCACCGGGGGGGGCGGTGACGGTGGCGGCGGC
GGCGGAGGGGGCCGAAGCGCGGCCGCGCCCTTCGCCGGCCTCGCCGACCG
CTACTGGCATCGCGCCCTCGACGAGTATCGCGAGACATTCCGCCCCTGGG
AGGGCATCAGCGACGGCCAGCTGGTCGCCGCCCCCCCACCGGTGCGGCTA
CACGTGGCGGAGGCAGCCGCGGCCGTGCTGGGGGGGCTTGGGCCACAACA
GCCGCCGGGGCTTGGGCCCGGGTTTGTCATGCCTGGGGAGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:666597..667189+

>mRNA_S-ischiensis_contig84.20103.1 ID=mRNA_S-ischiensis_contig84.20103.1|Name=mRNA_S-ischiensis_contig84.20103.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1158bp|location=Sequence derived from alignment at S-ischiensis_contig84:666597..667189+ (Schizocladia ischiensis KU_0333)
ATGGCCACCAATATAGTGGTGCGAACGCGGCTGTGGGCGGAGTACTTCAA
CAACACGCTGCGGTGCTGGGAGCCCTTACTGGACCCCTTCCAGTGTGTGG
TGCTCTCGGAGACCTCCTCCCGCCGGGGGGCCGGCTTGACGGTGCGCGCG
CGCTGCCCTTTGCACGTGAACGTCACCGCCGCGCTCCTCGACACGCTCTC
GGACGTCCAGCAGCGCATGGCCGCCGTCACCCGGCAGATCTTCGCCGGCG
GCCACCTCCAGGAGCGCATCGAGGCCATGCGAACCGCCGTTCAGGTGGCG
CCGACCACCGGGGGGGGCGGTGACGGTGGCGGCGGCGGCGGAGGGGGCCG
AAGCGCGGCCGCGCCCTTCGCCGGCCTCGCCGACCGCTACTGGCATCGCG
CCCTCGACGAGTATCGCGAGACATTCCGCCCCTGGGAGGGCATCAGCGAC
GGCCAGCTGGTCGCCGCCCCCCCACCGGTGCGGCTACACGTGGCGGAGGC
AGCCGCGGCCGTGCTGGGGGGGCTTGGGCCACAACAGCCGCCGGGGCTTG
GGCCCGGGTTTGTCATGCCTGGGGAGGGAATGGCCACCAATATAGTGGTG
CGAACGCGGCTGTGGGCGGAGTACTTCAACAACACGCTGCGGTGCTGGGA
GCCCTTACTGGACCCCTTCCAGTGTGTGGTGCTCTCGGAGACCTCCTCCC
GCCGGGGGGCCGGCTTGACGGTGCGCGCGCGCTGCCCTTTGCACGTGAAC
GTCACCGCCGCGCTCCTCGACACGCTCTCGGACGTCCAGCAGCGCATGGC
CGCCGTCACCCGGCAGATCTTCGCCGGCGGCCACCTCCAGGAGCGCATCG
AGGCCATGCGAACCGCCGTTCAGGTGGCGCCGACCACCGGGGGGGGCGGT
GACGGTGGCGGCGGCGGCGGAGGGGGCCGAAGCGCGGCCGCGCCCTTCGC
CGGCCTCGCCGACCGCTACTGGCATCGCGCCCTCGACGAGTATCGCGAGA
CATTCCGCCCCTGGGAGGGCATCAGCGACGGCCAGCTGGTCGCCGCCCCC
CCACCGGTGCGGCTACACGTGGCGGAGGCAGCCGCGGCCGTGCTGGGGGG
GCTTGGGCCACAACAGCCGCCGGGGCTTGGGCCCGGGTTTGTCATGCCTG
GGGAGGGA
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