mRNA_S-ischiensis_contig83.20032.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20032.1
Unique NamemRNA_S-ischiensis_contig83.20032.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:609169..609862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size695
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.042364-CDS-S-ischiensis_contig83:609168..6096631622817326.042364-CDS-S-ischiensis_contig83:609168..609663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 609169..609663 +
1695741028.2805433-CDS-S-ischiensis_contig83:609168..6096631695741028.2805433-CDS-S-ischiensis_contig83:609168..609663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 609169..609663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.0550556-UTR-S-ischiensis_contig83:609663..6098621622817326.0550556-UTR-S-ischiensis_contig83:609663..609862Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 609664..609862 +
1695741028.2912092-UTR-S-ischiensis_contig83:609663..6098621695741028.2912092-UTR-S-ischiensis_contig83:609663..609862Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 609664..609862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20032.1prot_S-ischiensis_contig83.20032.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 609169..609663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20032.1

>prot_S-ischiensis_contig83.20032.1 ID=prot_S-ischiensis_contig83.20032.1|Name=mRNA_S-ischiensis_contig83.20032.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
TTHPVTHSTTPGPRRRSLLTVSTSGPWLCSSSWGRRDPGPLSPGPSRSSN
STGSTPWASRTSPGPTCRPLRTWRRRCPSTRRASRSPGRARGRSSGCPRP
SRTRRGGHRGRHGHLQPLGGRPLRDRRSPGGRRLPRGGRAGPPRGGALGV
PCTWGAAHCLPPLR*
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mRNA from alignment at S-ischiensis_contig83:609169..609862+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20032.1 ID=mRNA_S-ischiensis_contig83.20032.1|Name=mRNA_S-ischiensis_contig83.20032.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=694bp|location=Sequence derived from alignment at S-ischiensis_contig83:609169..609862+ (Schizocladia ischiensis KU_0333)
ACAACCCACCCGGTGACCCACTCGACCACCCCTGGCCCGCGGAGGCGGTC
GCTGCTTACCGTCTCGACGTCGGGGCCGTGGCTCTGCAGTTCGTCCTGGG
GACGCCGGGACCCGGGGCCGCTGAGCCCCGGCCCCTCTCGGAGCTCGAAC
TCCACTGGGTCCACACCATGGGCCTCGCGGACCTCGCCGGGCCCGACTTG
CAGACCACTGCGGACCTGGAGGCGGCGCTGTCCCTCCACGCGGCGGGCCA
GTCGCTCACCCGGGCGGGCCCGGGGCCGGTCGAGTGGGTGCCCACGTCCC
TCTCGCACCCGCCGCGGGGGCCACCGCGGTCGACACGGTCATCTGCAGCC
CCTCGGGGGACGGCCGCTCCGTGACCGTCGCTCTCCGGGCGGCCGCCGGC
TCCCCCGGGGCGGGCGGGCCGGCCCTCCCCGCGGAGGGGCCCTTGGTGTT
CCTTGTACCTGGGGCGCAGCGCACTGTCTACCTCCTCTACGCTGACGTGG
GGGGGCCCTCCCCCGAAGGGGTCTGGCGTGTCAGCCCGATCTAGCGCACA
ACCACTTCTCCGTCCTGAACTTCCGGGACGAGCTGCCCCTCTCCGAATCG
GCCGTCCCCCACTTGCTGCTCTCCACCGACTTCTCGCACGTCGCCTCTTG
GTGGCGGCCCCCCTGCCGCGACCGTGGGGGTGGTGGCAGCAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:609169..609862+

>mRNA_S-ischiensis_contig83.20032.1 ID=mRNA_S-ischiensis_contig83.20032.1|Name=mRNA_S-ischiensis_contig83.20032.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig83:609169..609862+ (Schizocladia ischiensis KU_0333)
ACAACCCACCCGGTGACCCACTCGACCACCCCTGGCCCGCGGAGGCGGTC
GCTGCTTACCGTCTCGACGTCGGGGCCGTGGCTCTGCAGTTCGTCCTGGG
GACGCCGGGACCCGGGGCCGCTGAGCCCCGGCCCCTCTCGGAGCTCGAAC
TCCACTGGGTCCACACCATGGGCCTCGCGGACCTCGCCGGGCCCGACTTG
CAGACCACTGCGGACCTGGAGGCGGCGCTGTCCCTCCACGCGGCGGGCCA
GTCGCTCACCCGGGCGGGCCCGGGGCCGGTCGAGTGGGTGCCCACGTCCC
TCTCGCACCCGCCGCGGGGGCCACCGCGGTCGACACGGTCATCTGCAGCC
CCTCGGGGGACGGCCGCTCCGTGACCGTCGCTCTCCGGGCGGCCGCCGGC
TCCCCCGGGGCGGGCGGGCCGGCCCTCCCCGCGGAGGGGCCCTTGGTGTT
CCTTGTACCTGGGGCGCAGCGCACTGTCTACCTCCTCTACGCTGAACAAC
CCACCCGGTGACCCACTCGACCACCCCTGGCCCGCGGAGGCGGTCGCTGC
TTACCGTCTCGACGTCGGGGCCGTGGCTCTGCAGTTCGTCCTGGGGACGC
CGGGACCCGGGGCCGCTGAGCCCCGGCCCCTCTCGGAGCTCGAACTCCAC
TGGGTCCACACCATGGGCCTCGCGGACCTCGCCGGGCCCGACTTGCAGAC
CACTGCGGACCTGGAGGCGGCGCTGTCCCTCCACGCGGCGGGCCAGTCGC
TCACCCGGGCGGGCCCGGGGCCGGTCGAGTGGGTGCCCACGTCCCTCTCG
CACCCGCCGCGGGGGCCACCGCGGTCGACACGGTCATCTGCAGCCCCTCG
GGGGACGGCCGCTCCGTGACCGTCGCTCTCCGGGCGGCCGCCGGCTCCCC
CGGGGCGGGCGGGCCGGCCCTCCCCGCGGAGGGGCCCTTGGTGTTCCTTG
TACCTGGGGCGCAGCGCACTGTCTACCTCCTCTACGCTGA
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