mRNA_S-ischiensis_contig83.19964.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19964.1
Unique NamemRNA_S-ischiensis_contig83.19964.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: D7FZX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.090e-16
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  339 GRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            GR+PR+HQE+RR LPIF ++  ++ AV++HQTVVVVGETGSGKSTQIPQFL EAG  R
Sbjct:  321 GRVPRKHQEQRRGLPIFAHKADIIRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGITR 378
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.850e-16
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3 
Query:  339 GRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            GR+PR+HQE+RR LPIF ++  ++ AV+ HQTVVVVGETGSGKSTQIPQFL EAG  R
Sbjct:  321 GRVPRKHQEQRRGLPIFAHKADIIRAVKYHQTVVVVGETGSGKSTQIPQFLYEAGITR 378
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A835ZD99_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD99_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.250e-15
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 3 
Query:  336 SGRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCRPPALADGHASPSP 551
            S RLPRQHQE RR LP+F++R+ +V AV+ H+TVV+VGETGSGKSTQIPQ+L +AG       + G+ + SP
Sbjct:   26 SPRLPRQHQEVRRQLPVFQHRDNIVTAVKTHRTVVLVGETGSGKSTQIPQYLYDAGLASKHKGSSGNGTLSP 97
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: F2UF32_SALR5 (ATP-dependent helicase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF32_SALR5)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-13
Identity = 33/51 (64.71%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  360 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            QE R++LP+FKYREQ + AV+EHQ +++VGETGSGK+TQ+PQ+L EAG+C+
Sbjct:  397 QEVRKSLPVFKYREQFLEAVKEHQILIIVGETGSGKTTQLPQYLVEAGYCK 447
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A0M0JGR2_9EUKA (Pre-mRNA-splicing factor ATP-dependent RNA helicase dhx16-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGR2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 3.340e-13
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 3 
Query:  363 EERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCRP 515
            E R+ LP++ YRE+++AAVREHQ +++VGETGSGK+TQIPQ+L EAG C P
Sbjct:  435 EVRKTLPVYAYREEIIAAVREHQVLIIVGETGSGKTTQIPQYLYEAGLCAP 485
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A3P7I8F4_STRVU (Helicase ATP-binding domain-containing protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7I8F4_STRVU)

HSP 1 Score: 73.6 bits (179), Expect = 6.540e-13
Identity = 30/51 (58.82%), Postives = 44/51 (86.27%), Query Frame = 3 
Query:  360 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            +E RR+LP++ +REQ + AV+EHQ +++ GETGSGK+TQ+PQ+L EAGFC+
Sbjct:   55 EETRRSLPVYAFREQFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCK 105
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A7J7C7L0_TRIWF (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C7L0_TRIWF)

HSP 1 Score: 75.9 bits (185), Expect = 9.800e-13
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  357 HQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            HQEER+ LPI+ YR++L+ AV +HQ +V+VGETGSGK+TQIPQ+L EAG+ +
Sbjct:   70 HQEERKTLPIYAYRDELLQAVNDHQVIVIVGETGSGKTTQIPQYLHEAGYTK 121
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A8B8NH32_9MYRT (RNA helicase n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8NH32_9MYRT)

HSP 1 Score: 75.9 bits (185), Expect = 1.130e-12
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 3 
Query:  363 EERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            EER+NLPI+ YREQ++ A+R+HQ +V+VGETGSGK+TQIPQ+L EAG+ +
Sbjct:  411 EERKNLPIYPYREQILEAIRDHQVLVIVGETGSGKTTQIPQYLHEAGYTK 460
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A6I9Z2V4_9SAUR (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1 n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Z2V4_9SAUR)

HSP 1 Score: 73.2 bits (178), Expect = 1.350e-12
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 3 
Query:  360 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            QE RR+LPIF YRE L+AA+ +HQ +++ GETGSGK+TQIPQ+LCE G+ +
Sbjct:   78 QEVRRSLPIFPYREDLLAAIAQHQMLIIEGETGSGKTTQIPQYLCEEGYTK 128
[Close]
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A0J8BB81_BETVV (RNA helicase n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BB81_BETVV)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-12
Identity = 33/51 (64.71%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  360 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 512
            QEER+ LPI+ YRE+L++AVR+HQ +++VGETGSGK+TQIPQ+L EAG+ +
Sbjct:  411 QEERKTLPIYPYREELLSAVRDHQVLIIVGETGSGKTTQIPQYLHEAGYTK 461
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZX9_ECTSI2.090e-1670.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ10_9PHAE6.850e-1670.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD99_9STRA4.250e-1558.33P-loop containing nucleoside triphosphate hydrolas... [more]
F2UF32_SALR51.320e-1364.71ATP-dependent helicase n=1 Tax=Salpingoeca rosetta... [more]
A0A0M0JGR2_9EUKA3.340e-1364.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A3P7I8F4_STRVU6.540e-1358.82Helicase ATP-binding domain-containing protein n=1... [more]
A0A7J7C7L0_TRIWF9.800e-1363.46Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A8B8NH32_9MYRT1.130e-1266.00RNA helicase n=4 Tax=Myrtoideae TaxID=1699513 RepI... [more]
A0A6I9Z2V4_9SAUR1.350e-1262.75putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A0J8BB81_BETVV1.540e-1264.71RNA helicase n=3 Tax=Beta vulgaris subsp. vulgaris... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:150978..152941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog2880.D7FZX9
KEGG koko:K12818,ko:K13117
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size565
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19964.1prot_S-ischiensis_contig83.19964.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 150978..152924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.745664-CDS-S-ischiensis_contig83:150977..1511091622817323.745664-CDS-S-ischiensis_contig83:150977..151109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150978..151109 -
1695741027.0373235-CDS-S-ischiensis_contig83:150977..1511091695741027.0373235-CDS-S-ischiensis_contig83:150977..151109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 150978..151109 -
1622817323.762636-CDS-S-ischiensis_contig83:151887..1520311622817323.762636-CDS-S-ischiensis_contig83:151887..152031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 151888..152031 -
1695741027.0560079-CDS-S-ischiensis_contig83:151887..1520311695741027.0560079-CDS-S-ischiensis_contig83:151887..152031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 151888..152031 -
1622817323.7768347-CDS-S-ischiensis_contig83:152654..1529241622817323.7768347-CDS-S-ischiensis_contig83:152654..152924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 152655..152924 -
1695741027.0654802-CDS-S-ischiensis_contig83:152654..1529241695741027.0654802-CDS-S-ischiensis_contig83:152654..152924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 152655..152924 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.787789-UTR-S-ischiensis_contig83:152924..1529411622817323.787789-UTR-S-ischiensis_contig83:152924..152941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 152925..152941 -
1695741027.0746865-UTR-S-ischiensis_contig83:152924..1529411695741027.0746865-UTR-S-ischiensis_contig83:152924..152941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 152925..152941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19964.1

>prot_S-ischiensis_contig83.19964.1 ID=prot_S-ischiensis_contig83.19964.1|Name=mRNA_S-ischiensis_contig83.19964.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
MPKRSKRRRSSGEGGAGGLQVGDHRKARSQGPGTPQAVVGAHATGDDAAN
GGGGSPSEQRTNIKKHKEHGHGSSEALGSGHQRERGSMSEGGQRETPQRG
PASPATSGRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGK
STQIPQFLCEAGFCRPPALADGHASPSPSPAA
back to top

mRNA from alignment at S-ischiensis_contig83:150978..152941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19964.1 ID=mRNA_S-ischiensis_contig83.19964.1|Name=mRNA_S-ischiensis_contig83.19964.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1964bp|location=Sequence derived from alignment at S-ischiensis_contig83:150978..152941- (Schizocladia ischiensis KU_0333)
GGTGGACTTGTTGTACCATGCCCAAGCGCTCCAAGCGGAGACGGAGCTCG
GGAGAAGGCGGGGCGGGTGGTCTGCAAGTGGGGGACCACAGGAAGGCCCG
CAGTCAAGGTCCAGGGACACCACAGGCTGTTGTCGGTGCTCATGCAACAG
GGGACGATGCAGCCAATGGAGGAGGCGGGAGCCCCAGTGAACAACGGACT
AACATAAAGAAGCACAAGGAACATGGTCATGGCAGTAGCGAAGCCCTTGG
CTCTGGCCATCAGCGCGAAAGAGGCAGCATGAGCGAGGTTAGTTGCCACC
ACCTTAGGCAAGGCTCGTCAGCAGCGTACGCAATGGTCCCCCTTGCTGGA
CGCTGAGACCACAGCCCACAAATAGTCATGGTCTCGGTAAAGGCGTGACC
AAGTGGGGGGGTATTGGTCCAGCACCACAGAGAAGAAGGCCTGGCCGAAG
ATGTCTTCTCCCTGATTCCTCCAATGTGCATGTACTTGCACACGGTTCAC
GATGGTCGTGTGAATACGGCATGCCACCGTGAGTATGTACTCATTGGCTT
GTCTTGCGGCAAAACCTTGCGTGCATTGCTGACAGCCCGAAGTGCCGTGC
CAACGTGAGTACATCATATACATATACACATAATTGTATACCAGAGTTGT
GGAGGAGGAGCACCATAATACTTCGAAGTATGCATGATGTATATACACGC
ACTGCAACTCATACAGGAACTGTGTACGTATACCTCCCCCCACCCACCCT
GGCTCTGACAGGGGAGGGCGGGGGCCTGCTCATTCTTGGTCGAGGGGCGG
GGTCAACGGTCTCGGGACTGTGGCAAGCTCAGCGTGAGTACACACACACA
CACACGCATATATGTAGCTGGTTGTTATTTTCCCTGATCCTCGCACCTCT
GCAACCGCAGGGCGGGCAGCGCGAAACGCCTCAACGGGGGCCTGCCTCCC
CAGCAACCTCCGGACGCCTGCCACGCCAGCACCAAGAGGAGAGGAGGAAC
TTGCCCATCTTCAAGTACCGGGAGCAGCTGGTGGCGGCCGTGCGAGAGCA
CCAGGTGAGGCCATGGAGACGATGTTGGCTTGCCCCACTGCCTCCTGCTC
CGCCATCGACTCCGCCACTCCCGGGCACTGGGCCACGACAGGACCTGGCA
GCGCCTTGGGGCCAGCTGCAGGCATGGCCTCCTCTGTGGCGGCGTGCGAG
AGCATTCGGTCGCCACGGGTGTTTCGCTGCTGTTCTCTACGAGTACTACT
GTACCGTACTGTACCTGCATGCACGCCTACCTACGGTTGGGCACTTTTAC
CCCACCCTCGATGGACGCCGTGTGCACGGGGTCCCACGGTCTCTGGGCGG
TTGTCACGACGAGCACACGCGTGATGACCCGACGAAGCGCACGCCAAGCA
GTTCCCACTCTTTGCTGCTGAGCAGTGCGACAAGCCGTCAAGGGTCCTCC
GGCTCCGTCAAATAGTCCGGCCGGTGCTCGCTGCTGGCTGCGCAAGCCTT
CTGGCCCTCCTCATGCCTCCAACTACCCCCCCCGCCTCCTGCGCCGCGGT
ACCCCAACGCCCAGCAACCACCCGGCACCAACCCCAACCACCAGTAATGG
AATATCGATCAGTAGATAGTTGTCGGGCTCGACTGATTTTGTGGGTGGCG
TGCCCAACTACTTGGATATAGTGTGCGTCAAACTATCGAACATCGACTAT
CGATAGGTATATACATCAGTACTGTCGATAAATAGGTTGATTTACCTAGA
TATTCCATCACTGCCGACCGCCACCCCCCTGTCACCTCCCCCTTTGCCGC
TCGGCCCCGCTCTCCCCCCCCCCTGGCAAAAGACCGTCGTGGTGGTCGGC
GAGACGGGCAGCGGCAAATCCACCCAGATACCGCAGTTCTTGTGCGAGGC
CGGCTTCTGCAGGCCGCCCGCGCTGGCCGACGGACATGCCTCCCCCTCCC
CCTCCCCTGCAGCT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig83:150978..152941-

>mRNA_S-ischiensis_contig83.19964.1 ID=mRNA_S-ischiensis_contig83.19964.1|Name=mRNA_S-ischiensis_contig83.19964.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig83:150978..152941- (Schizocladia ischiensis KU_0333)
ATGCCCAAGCGCTCCAAGCGGAGACGGAGCTCGGGAGAAGGCGGGGCGGG
TGGTCTGCAAGTGGGGGACCACAGGAAGGCCCGCAGTCAAGGTCCAGGGA
CACCACAGGCTGTTGTCGGTGCTCATGCAACAGGGGACGATGCAGCCAAT
GGAGGAGGCGGGAGCCCCAGTGAACAACGGACTAACATAAAGAAGCACAA
GGAACATGGTCATGGCAGTAGCGAAGCCCTTGGCTCTGGCCATCAGCGCG
AAAGAGGCAGCATGAGCGAGATGCCCAAGCGCTCCAAGCGGAGACGGAGC
TCGGGAGAAGGCGGGGCGGGTGGTCTGCAAGTGGGGGACCACAGGAAGGC
CCGCAGTCAAGGTCCAGGGACACCACAGGCTGTTGTCGGTGCTCATGCAA
CAGGGGACGATGCAGCCAATGGAGGAGGCGGGAGCCCCAGTGAACAACGG
ACTAACATAAAGAAGCACAAGGAACATGGTCATGGCAGTAGCGAAGCCCT
TGGCTCTGGCCATCAGCGCGAAAGAGGCAGCATGAGCGAGGGCGGGCAGC
GCGAAACGCCTCAACGGGGGCCTGCCTCCCCAGCAACCTCCGGACGCCTG
CCACGCCAGCACCAAGAGGAGAGGAGGAACTTGCCCATCTTCAAGTACCG
GGAGCAGCTGGTGGCGGCCGTGCGAGAGCACCAGGGCGGGCAGCGCGAAA
CGCCTCAACGGGGGCCTGCCTCCCCAGCAACCTCCGGACGCCTGCCACGC
CAGCACCAAGAGGAGAGGAGGAACTTGCCCATCTTCAAGTACCGGGAGCA
GCTGGTGGCGGCCGTGCGAGAGCACCAGACCGTCGTGGTGGTCGGCGAGA
CGGGCAGCGGCAAATCCACCCAGATACCGCAGTTCTTGTGCGAGGCCGGC
TTCTGCAGGCCGCCCGCGCTGGCCGACGGACATGCCTCCCCCTCCCCCTC
CCCTGCAGCTACCGTCGTGGTGGTCGGCGAGACGGGCAGCGGCAAATCCA
CCCAGATACCGCAGTTCTTGTGCGAGGCCGGCTTCTGCAGGCCGCCCGCG
CTGGCCGACGGACATGCCTCCCCCTCCCCCTCCCCTGCAGCT
back to top