prot_S-ischiensis_contig83.19964.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig83.19964.1
Unique Nameprot_S-ischiensis_contig83.19964.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length182
Homology
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: D7FZX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.800e-16
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0
Query:  108 GRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            GR+PR+HQE+RR LPIF ++  ++ AV++HQTVVVVGETGSGKSTQIPQFL EAG  R
Sbjct:  321 GRVPRKHQEQRRGLPIFAHKADIIRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGITR 378          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.920e-16
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0
Query:  108 GRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            GR+PR+HQE+RR LPIF ++  ++ AV+ HQTVVVVGETGSGKSTQIPQFL EAG  R
Sbjct:  321 GRVPRKHQEQRRGLPIFAHKADIIRAVKYHQTVVVVGETGSGKSTQIPQFLYEAGITR 378          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A835ZD99_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD99_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.670e-15
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0
Query:  107 SGRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCRPPALADGHASPSP 178
            S RLPRQHQE RR LP+F++R+ +V AV+ H+TVV+VGETGSGKSTQIPQ+L +AG       + G+ + SP
Sbjct:   26 SPRLPRQHQEVRRQLPVFQHRDNIVTAVKTHRTVVLVGETGSGKSTQIPQYLYDAGLASKHKGSSGNGTLSP 97          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: F2UF32_SALR5 (ATP-dependent helicase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF32_SALR5)

HSP 1 Score: 78.6 bits (192), Expect = 1.150e-13
Identity = 33/51 (64.71%), Postives = 46/51 (90.20%), Query Frame = 0
Query:  115 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            QE R++LP+FKYREQ + AV+EHQ +++VGETGSGK+TQ+PQ+L EAG+C+
Sbjct:  397 QEVRKSLPVFKYREQFLEAVKEHQILIIVGETGSGKTTQLPQYLVEAGYCK 447          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A0M0JGR2_9EUKA (Pre-mRNA-splicing factor ATP-dependent RNA helicase dhx16-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGR2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 2.900e-13
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  116 EERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCRP 166
            E R+ LP++ YRE+++AAVREHQ +++VGETGSGK+TQIPQ+L EAG C P
Sbjct:  435 EVRKTLPVYAYREEIIAAVREHQVLIIVGETGSGKTTQIPQYLYEAGLCAP 485          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A3P7I8F4_STRVU (Helicase ATP-binding domain-containing protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7I8F4_STRVU)

HSP 1 Score: 73.6 bits (179), Expect = 5.770e-13
Identity = 30/51 (58.82%), Postives = 44/51 (86.27%), Query Frame = 0
Query:  115 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            +E RR+LP++ +REQ + AV+EHQ +++ GETGSGK+TQ+PQ+L EAGFC+
Sbjct:   55 EETRRSLPVYAFREQFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCK 105          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A7J7C7L0_TRIWF (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C7L0_TRIWF)

HSP 1 Score: 75.9 bits (185), Expect = 8.560e-13
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 0
Query:  114 HQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            HQEER+ LPI+ YR++L+ AV +HQ +V+VGETGSGK+TQIPQ+L EAG+ +
Sbjct:   70 HQEERKTLPIYAYRDELLQAVNDHQVIVIVGETGSGKTTQIPQYLHEAGYTK 121          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A8B8NH32_9MYRT (RNA helicase n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8NH32_9MYRT)

HSP 1 Score: 75.9 bits (185), Expect = 9.850e-13
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:  116 EERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            EER+NLPI+ YREQ++ A+R+HQ +V+VGETGSGK+TQIPQ+L EAG+ +
Sbjct:  411 EERKNLPIYPYREQILEAIRDHQVLVIVGETGSGKTTQIPQYLHEAGYTK 460          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A6I9Z2V4_9SAUR (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1 n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Z2V4_9SAUR)

HSP 1 Score: 73.2 bits (178), Expect = 1.190e-12
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 0
Query:  115 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            QE RR+LPIF YRE L+AA+ +HQ +++ GETGSGK+TQIPQ+LCE G+ +
Sbjct:   78 QEVRRSLPIFPYREDLLAAIAQHQMLIIEGETGSGKTTQIPQYLCEEGYTK 128          
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Match: A0A0J8BB81_BETVV (RNA helicase n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BB81_BETVV)

HSP 1 Score: 75.5 bits (184), Expect = 1.340e-12
Identity = 33/51 (64.71%), Postives = 46/51 (90.20%), Query Frame = 0
Query:  115 QEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGKSTQIPQFLCEAGFCR 165
            QEER+ LPI+ YRE+L++AVR+HQ +++VGETGSGK+TQIPQ+L EAG+ +
Sbjct:  411 QEERKTLPIYPYREELLSAVRDHQVLIIVGETGSGKTTQIPQYLHEAGYTK 461          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZX9_ECTSI1.800e-1670.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ10_9PHAE5.920e-1670.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD99_9STRA3.670e-1558.33P-loop containing nucleoside triphosphate hydrolas... [more]
F2UF32_SALR51.150e-1364.71ATP-dependent helicase n=1 Tax=Salpingoeca rosetta... [more]
A0A0M0JGR2_9EUKA2.900e-1364.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
A0A3P7I8F4_STRVU5.770e-1358.82Helicase ATP-binding domain-containing protein n=1... [more]
A0A7J7C7L0_TRIWF8.560e-1363.46Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A8B8NH32_9MYRT9.850e-1366.00RNA helicase n=4 Tax=Myrtoideae TaxID=1699513 RepI... [more]
A0A6I9Z2V4_9SAUR1.190e-1262.75putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A0J8BB81_BETVV1.340e-1264.71RNA helicase n=3 Tax=Beta vulgaris subsp. vulgaris... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 70..176
e-value: 4.2E-20
score: 73.8
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 109..164
NoneNo IPR availablePANTHERPTHR18934:SF208coord: 109..164
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 114..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:150978..152924 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19964.1mRNA_S-ischiensis_contig83.19964.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig83 150978..152941 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig83.19964.1 ID=prot_S-ischiensis_contig83.19964.1|Name=mRNA_S-ischiensis_contig83.19964.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
MPKRSKRRRSSGEGGAGGLQVGDHRKARSQGPGTPQAVVGAHATGDDAAN
GGGGSPSEQRTNIKKHKEHGHGSSEALGSGHQRERGSMSEGGQRETPQRG
PASPATSGRLPRQHQEERRNLPIFKYREQLVAAVREHQTVVVVGETGSGK
STQIPQFLCEAGFCRPPALADGHASPSPSPAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase