mRNA_S-ischiensis_contig11.2161.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2161.1
Unique NamemRNA_S-ischiensis_contig11.2161.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1702847..1704961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size859
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2161.1prot_S-ischiensis_contig11.2161.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1702854..1704961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.093183-UTR-S-ischiensis_contig11:1702846..17028531622815578.093183-UTR-S-ischiensis_contig11:1702846..1702853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1702847..1702853 +
1695739781.8406715-UTR-S-ischiensis_contig11:1702846..17028531695739781.8406715-UTR-S-ischiensis_contig11:1702846..1702853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1702847..1702853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.1034698-CDS-S-ischiensis_contig11:1702853..17034341622815578.1034698-CDS-S-ischiensis_contig11:1702853..1703434Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1702854..1703434 +
1695739781.850492-CDS-S-ischiensis_contig11:1702853..17034341695739781.850492-CDS-S-ischiensis_contig11:1702853..1703434Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1702854..1703434 +
1622815578.1148145-CDS-S-ischiensis_contig11:1704690..17049611622815578.1148145-CDS-S-ischiensis_contig11:1704690..1704961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1704691..1704961 +
1695739781.8641043-CDS-S-ischiensis_contig11:1704690..17049611695739781.8641043-CDS-S-ischiensis_contig11:1704690..1704961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1704691..1704961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2161.1

>prot_S-ischiensis_contig11.2161.1 ID=prot_S-ischiensis_contig11.2161.1|Name=mRNA_S-ischiensis_contig11.2161.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=284bp
MDHPLYQLHGLRVDQQRGLSMLAHHARDRGRVLERREVSSIGGSSTAGAL
GNRGWPAVSSERGAWATPNGGARAASPPHFPPDAARARALGVSEDTTAAV
AAFSPPEGWEKSRVPALGTKNRSPVYDFGVRLQEIIPPGSDKKPNQRFYC
LASHSCRQKRTVIRLASGNTSTAIEHLRVVHSFTGDKYRTQAAKQMVREG
PRPDDQRRLDDPAFARRPPGGAADPRGPGGQAGRKGKGKGTERARESNGS
GRPVDLTDAVAWSELRRKRPRANREEEEEEDDYD
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mRNA from alignment at S-ischiensis_contig11:1702847..1704961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2161.1 ID=mRNA_S-ischiensis_contig11.2161.1|Name=mRNA_S-ischiensis_contig11.2161.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2115bp|location=Sequence derived from alignment at S-ischiensis_contig11:1702847..1704961+ (Schizocladia ischiensis KU_0333)
GTGGGACATGGATCACCCTCTGTACCAGCTTCACGGACTGAGGGTGGACC
AGCAGAGGGGCCTATCAATGCTCGCGCACCACGCACGCGACCGAGGGAGA
GTACTCGAGCGGAGGGAGGTGTCCAGTATAGGGGGCTCCAGTACGGCGGG
CGCCCTGGGGAACCGTGGGTGGCCCGCAGTTTCTAGCGAACGGGGCGCCT
GGGCCACGCCCAACGGAGGGGCCAGGGCCGCCAGTCCCCCTCATTTCCCC
CCCGACGCGGCGAGGGCGCGCGCACTTGGCGTATCGGAGGATACCACGGC
GGCCGTTGCCGCCTTCAGCCCCCCGGAAGGTTGGGAGAAGTCGAGGGTGC
CGGCCCTGGGGACGAAAAATCGGTCCCCAGTGTATGACTTCGGGGTGCGC
TTGCAGGAGATCATTCCCCCCGGCTCCGACAAGAAGCCGAATCAGAGGTT
CTACTGCCTTGCCAGCCATTCTTGCCGGCAGAAGAGGACTGTGATCAGGC
TGGCCTCTGGCAATACCTCCACAGCCATTGAACATCTGAGGGTGGTGCAC
TCGTTCACGGGAGACAAGTACAGGACTCAGGCTGCAAAGTGAGTTGCGAC
GCCCTCGCGTCGCCCCCCCACCCTGTGCCTTGCTTGTGATCGTTCGTCAC
GGTGCAGACGCGGTGCAATCGGTAGAACATAAATTTGAAATGCTACCTTT
GAGTGCTGCTCATGGCCTGTGCAAGTTGTTTCCCGTGCATGTGAGCTAGA
TACTCGCACTGGTTCTTCTTCTCGCAGCTGAGTGCCGCACATGGTCTGAG
AAAAGATACAGTCGTGCCCGCTTAAAGTCAACACCCGACAAGCCAACATC
CAACACCCGCTCCCGTGTAGTGTTTTAAAATTACCTTGATGGGATGGCAT
GCGAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCACCAGAA
GCCCTTCTTTTTGCCCGCGTCTCGACTTATCCCGGGGAACCCGTGCGGAT
TTGTTGACTTAACCCGGGAAAGATGCCTTTTTGACTGTGGAACTGCTCGG
CGCCCGATCGGGAAGCGGGACTCGGCTCGGGCGAGGGAGGCAGGAGCTGA
AAGATCCTTTTCCGCCATGTATATAAGTATTCTACATATGTGCGAGCCAA
AATGCACCAGTACTGGATGCAGTGAGCACTCGCTTGCATCCACTGGGTGT
TATACTCTGTGTTTGGCTTTCAAATCAGAGCGACGGCGTAAATGTGGCTG
GCCGCCCACGGCTCACGGGCATCCAAAATGGGGGATTTTTCTCCCCAGCC
AGAGGTGGAATTTTTTGTCATAAAGTTGTCTCTTGCGTACACCCGCACGT
TCCCTGGGTCAAGGGGAGTCCATCGCACCATACTAGGGCAGCCAAACTCC
CTGTGACGGCCAAGATATCGCCTGGTAAAGTTAAGTAAACAGTTGCCCCG
GTGACCCACGTGTTGATTTGAAGCGGGGACGACTGCATGGTAGCGCTTGT
CGCAACTATCAATTGTCGGGGCATACAGTACCTGTTCTAACCCTTTTACC
CCGGGTTGCTTGGACACACACACCAAAACCCTATGATTACACGGACCCCA
GGGGCAAAAAGGGGTAAGAGGCTCACAGGACGGGAAGCCGAGGCCGGGGA
CTGCCCTGACTTTCCCATTTCCTTTACACCCCGCCGGGACAAAGCCTTGA
ACTTGTTGTGTCTCCATTTCGGCGGTCGGAAGCCTTCGTTTCTCAGGCGC
GGTTCTCACGGATTTATGCGTTCCGCGCACTTAACCCAAAGCATGCCACG
CCGATTATGTCACCTCTTCCTACTTACGCCTCTCCCTGTGGCAGGCAAAT
GGTCAGGGAGGGCCCAAGGCCGGACGACCAGAGGCGGCTCGATGACCCGG
CATTCGCGAGGAGACCACCTGGGGGAGCCGCCGACCCCCGGGGGCCAGGA
GGCCAGGCCGGCAGGAAGGGCAAGGGGAAGGGAACGGAACGGGCGAGGGA
GAGCAACGGTTCGGGCCGACCGGTAGACCTTACGGATGCGGTGGCCTGGT
CGGAGCTGCGTCGCAAGCGCCCCCGGGCGAACAGGGAGGAAGAGGAGGAG
GAGGACGACTACGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1702847..1704961+

>mRNA_S-ischiensis_contig11.2161.1 ID=mRNA_S-ischiensis_contig11.2161.1|Name=mRNA_S-ischiensis_contig11.2161.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1704bp|location=Sequence derived from alignment at S-ischiensis_contig11:1702847..1704961+ (Schizocladia ischiensis KU_0333)
ATGGATCACCCTCTGTACCAGCTTCACGGACTGAGGGTGGACCAGCAGAG
GGGCCTATCAATGCTCGCGCACCACGCACGCGACCGAGGGAGAGTACTCG
AGCGGAGGGAGGTGTCCAGTATAGGGGGCTCCAGTACGGCGGGCGCCCTG
GGGAACCGTGGGTGGCCCGCAGTTTCTAGCGAACGGGGCGCCTGGGCCAC
GCCCAACGGAGGGGCCAGGGCCGCCAGTCCCCCTCATTTCCCCCCCGACG
CGGCGAGGGCGCGCGCACTTGGCGTATCGGAGGATACCACGGCGGCCGTT
GCCGCCTTCAGCCCCCCGGAAGGTTGGGAGAAGTCGAGGGTGCCGGCCCT
GGGGACGAAAAATCGGTCCCCAGTGTATGACTTCGGGGTGCGCTTGCAGG
AGATCATTCCCCCCGGCTCCGACAAGAAGCCGAATCAGAGGTTCTACTGC
CTTGCCAGCCATTCTTGCCGGCAGAAGAGGACTGTGATCAGGCTGGCCTC
TGGCAATACCTCCACAGCCATTGAACATCTGAGGGTGGTGCACTCGTTCA
CGGGAGACAAGTACAGGACTCAGGCTGCAAAATGGATCACCCTCTGTACC
AGCTTCACGGACTGAGGGTGGACCAGCAGAGGGGCCTATCAATGCTCGCG
CACCACGCACGCGACCGAGGGAGAGTACTCGAGCGGAGGGAGGTGTCCAG
TATAGGGGGCTCCAGTACGGCGGGCGCCCTGGGGAACCGTGGGTGGCCCG
CAGTTTCTAGCGAACGGGGCGCCTGGGCCACGCCCAACGGAGGGGCCAGG
GCCGCCAGTCCCCCTCATTTCCCCCCCGACGCGGCGAGGGCGCGCGCACT
TGGCGTATCGGAGGATACCACGGCGGCCGTTGCCGCCTTCAGCCCCCCGG
AAGGTTGGGAGAAGTCGAGGGTGCCGGCCCTGGGGACGAAAAATCGGTCC
CCAGTGTATGACTTCGGGGTGCGCTTGCAGGAGATCATTCCCCCCGGCTC
CGACAAGAAGCCGAATCAGAGGTTCTACTGCCTTGCCAGCCATTCTTGCC
GGCAGAAGAGGACTGTGATCAGGCTGGCCTCTGGCAATACCTCCACAGCC
ATTGAACATCTGAGGGTGGTGCACTCGTTCACGGGAGACAAGTACAGGAC
TCAGGCTGCAAAGCAAATGGTCAGGGAGGGCCCAAGGCCGGACGACCAGA
GGCGGCTCGATGACCCGGCATTCGCGAGGAGACCACCTGGGGGAGCCGCC
GACCCCCGGGGGCCAGGAGGCCAGGCCGGCAGGAAGGGCAAGGGGAAGGG
AACGGAACGGGCGAGGGAGAGCAACGGTTCGGGCCGACCGGTAGACCTTA
CGGATGCGGTGGCCTGGTCGGAGCTGCGTCGCAAGCGCCCCCGGGCGAAC
AGGGAGGAAGAGGAGGAGGAGGACGACTACGACGCAAATGGTCAGGGAGG
GCCCAAGGCCGGACGACCAGAGGCGGCTCGATGACCCGGCATTCGCGAGG
AGACCACCTGGGGGAGCCGCCGACCCCCGGGGGCCAGGAGGCCAGGCCGG
CAGGAAGGGCAAGGGGAAGGGAACGGAACGGGCGAGGGAGAGCAACGGTT
CGGGCCGACCGGTAGACCTTACGGATGCGGTGGCCTGGTCGGAGCTGCGT
CGCAAGCGCCCCCGGGCGAACAGGGAGGAAGAGGAGGAGGAGGACGACTA
CGAC
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