mRNA_S-ischiensis_contig82.19918.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19918.1
Unique NamemRNA_S-ischiensis_contig82.19918.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.680e-25
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  268 PLVYLHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPLNTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            PL Y+ FCL CP P +EGS V AL   HG R F A+GD++YAVPND  +E LN  ++ G I L+DRG +P++EK+ + Q AGA G +++DNG
Sbjct:   40 PLQYVEFCLDCPDPHLEGSHVPALRAAHGQRAFNATGDIIYAVPNDGSAELLNPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNG 131
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.860e-20
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  250 DLEPQYPLVYLHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPL-NTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            D  P   L  L FC  CP P +EG+ VL L    G +++  +GD+ YAVPN ++   L N+ ++ G I  VDRG++P+VEKI  AQ AGA GVV+ D+G
Sbjct:   48 DTNPDAGLRSLEFCRSCPDPHLEGTQVLGLGAAQGPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDG 146
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A8J2SH82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH82_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.500e-16
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  271 LVYLHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPLNTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            L  + FC  C  P  EGS+   L    G RD+  +  +VYA+PND  ++P+N  ++ G + LV R   P+V+KI  AQ AGA GVV++D+G
Sbjct:   47 LARIEFCAYCEDPHTEGSLARGLTALQGARDYKITSKLVYALPNDASTKPMNADELTGNVALVHRSATPLVQKILHAQEAGAVGVVLVDDG 137
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A485LS24_9STRA (Aste57867_24352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS24_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.520e-14
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:  280 LHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPLNTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            L FC  C     EGS V A    +    F   G++VYAVPN    +  N   + G I LVDRG+VPIVEK+ R   AG  GVVV+D+G
Sbjct:   49 LVFCHKCDDVTSEGSFVPAWGSHYNPDSFHVHGEIVYAVPNTANEDLYNAHHVHGRIALVDRGDVPIVEKVKRVHEAGGVGVVVVDSG 136
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.010e-13
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:  280 LHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPLNTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            L FC  C   A  GS V     R+   D+   G++ YAVPN    +  N   + G IVLVDRG+VPI+EK+ R Q AG   VV++D+G
Sbjct:   46 LTFCKKCHDVASLGSFVHTWDSRYNPSDYHVQGEIAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDG 133
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-11
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  271 LVYLHFCLGCPTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPL-NTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            L ++ +CL CP P  EGS++ +L  ++G+ ++  +G++VY VPN      L N   +   I  VDRGE+ +++K+ + Q A A GVV+ D+G
Sbjct:   39 LKWITYCLKCPDPRSEGSILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDG 130
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: A0A7S4SFD5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SFD5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.320e-8
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:  280 LHFCLGCPTPAMEGSMVLALAPRHG-LRDFFAS-GDVVYAVPNDLRSEPL-NTGDMRGAIVLVDRG-EVPIVEKITRAQGAGAAGVVVIDN 540
            +HFC  C  P  EGS + AL    G L++  +   +VVYAVPN    E L N  +  G++V+   G  V   +KIT A  AGAAGV++IDN
Sbjct:   93 IHFCQNCENPENEGSRITALVAVAGNLKEKMSLVANVVYAVPNHGSEEGLYNAAEAFGSVVIFHHGGSVSTTDKITMANDAGAAGVIIIDN 183
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-6
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  358 RDFFASGDVVYAVPNDLRSEPLNTGDMRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            R F    +VV A P D RSE  N   +R  IV+V RG++PIV K+  AQ AGA GV+V D+G
Sbjct:   78 RSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDG 139
[Close]
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.450e-5
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  436 MRGAIVLVDRGEVPIVEKITRAQGAGAAGVVVIDNG 543
            M   +VL +RGEVP+VEKI +AQ AGA GV+V+DNG
Sbjct:    1 MAACVVLFERGEVPVVEKILKAQTAGAVGVIVVDNG 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835Z4S0_9STRA2.680e-2552.17PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2WGD9_9STRA1.860e-2045.45Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J2SH82_9STRA8.500e-1641.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485LS24_9STRA3.520e-1445.45Aste57867_24352 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0W7Z3_9STRA3.010e-1343.18PA domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A482SJ43_9ARCH1.240e-1136.96PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S4SFD5_9STRA3.320e-842.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8LI37_ECTSI1.420e-650.00PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
D7FPJ4_ECTSI3.450e-563.89Vacuolar sorting receptor, putative (ISS) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:289980..297463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size545
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19918.1prot_S-ischiensis_contig82.19918.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 289980..297463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817321.4233763-CDS-S-ischiensis_contig82:289979..2900511622817321.4233763-CDS-S-ischiensis_contig82:289979..290051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 289980..290051 -
1695741025.0975015-CDS-S-ischiensis_contig82:289979..2900511695741025.0975015-CDS-S-ischiensis_contig82:289979..290051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 289980..290051 -
1622817321.434945-CDS-S-ischiensis_contig82:292614..2927061622817321.434945-CDS-S-ischiensis_contig82:292614..292706Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 292615..292706 -
1695741025.108012-CDS-S-ischiensis_contig82:292614..2927061695741025.108012-CDS-S-ischiensis_contig82:292614..292706Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 292615..292706 -
1622817321.4455636-CDS-S-ischiensis_contig82:293575..2936261622817321.4455636-CDS-S-ischiensis_contig82:293575..293626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 293576..293626 -
1695741025.1265407-CDS-S-ischiensis_contig82:293575..2936261695741025.1265407-CDS-S-ischiensis_contig82:293575..293626Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 293576..293626 -
1622817321.4590433-CDS-S-ischiensis_contig82:297135..2974631622817321.4590433-CDS-S-ischiensis_contig82:297135..297463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 297136..297463 -
1695741025.1397412-CDS-S-ischiensis_contig82:297135..2974631695741025.1397412-CDS-S-ischiensis_contig82:297135..297463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 297136..297463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19918.1

>prot_S-ischiensis_contig82.19918.1 ID=prot_S-ischiensis_contig82.19918.1|Name=mRNA_S-ischiensis_contig82.19918.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
KLSWSVYIRRRFAGELISRVCSELFDMGALACPSDRGWPVTRLVRAACAA
LLVAVGSSARNGKERTAMGGSLVRIAMRARGRADLEPQYPLVYLHFCLGC
PTPAMEGSMVLALAPRHGLRDFFASGDVVYAVPNDLRSEPLNTGDMRGAI
VLVDRGEVPIVEKITRAQGAGAAGVVVIDNG
back to top

mRNA from alignment at S-ischiensis_contig82:289980..297463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19918.1 ID=mRNA_S-ischiensis_contig82.19918.1|Name=mRNA_S-ischiensis_contig82.19918.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7484bp|location=Sequence derived from alignment at S-ischiensis_contig82:289980..297463- (Schizocladia ischiensis KU_0333)
AAGCTGTCCTGGTCTGTGTACATTCGCCGCCGTTTCGCGGGCGAACTCAT
CAGCAGGGTTTGCTCGGAGCTTTTTGACATGGGTGCGTTAGCATGCCCGA
GCGACCGGGGATGGCCCGTAACACGTCTGGTAAGGGCCGCTTGCGCTGCG
CTGCTCGTGGCGGTGGGAAGCTCAGCTAGGAACGGGAAGGAGAGGACGGC
CATGGGGGGGAGCTTGGTCAGGATCGCAATGCGGGCGCGAGGCCGCGCAG
ACCTTGAGCCGCAGTACCCTTTAGTGTACTTGCACTTCTGTTTGGGGTGC
CCAACTCCGGCCATGGAGGGTTCAATGGGTGAGTTGCTGCATTCAGGCTG
GCATTGCGCTCTTTCCTCCCAAACAGCTGACCACGGTGGCCGCCCCTCCA
AGGGTCGGATAAGTACAGTTCAGATAGTGCAAGACTACGTAGTGTGCAAG
TGCTACTGTAGTCTGATACTTCGAAGTAAGGAACAACACGGGGCGAGGTA
CGGGCCACGTCACTAGAGACCTCAAGTAGTTGGGAGGCTATGAGTTTCGA
AAACCCAAGAGGTTGGGAAATTGATATTCGACCAGGTGCAAGAATAGTGT
GCAAGTGCTACTGCAGTAGTTGGGAGACTATGAGTTTTGAAACCCAAGAG
GTGGGAAACTGAGTTTCAACCAGGTGCAAGACTACAGTAGTGTGCAGGTG
CTACTGTAGTAGTTGGGAGAGTATGAGTTTCGAAAACCCAAGAGGTTGGG
AAATTGAGTTTCACAACTCTAAAGTAGTTGGGAGATAGAGTTTGAAAAAA
TGCCAAGTGGTCCTGTAGCGTACTCGAAAAGTACAATTGCAGTAACCCTC
CTACCGTAGGAGGCTGCACGCGGCATGCGTTCGACCCACTCTGTCGCAGC
CGGAGAGGTTTGACCACAGTAATGATGTACTTCGAAGTACTCAAAAAGAG
CACCGCCGCCAGTGTTTCTTGGGCACATGTCACACCACTAGGTTTCGTAC
GGGCTGCTAAATCTCTGTTTAAACTGTGCTGAGGAAATATGCAGTACTCG
TAAGCACTTAGCCTTGGGGCACTACTGTGCGGCGCATCTCCCACAGTTGC
TGGGAGTAATTCCAGCCCATCTGCTTACGTTCTGTGTACTTCGAAGTATA
TGTGAGTCGATCGATGGACGCTTGTACAAGTGCGTAGACTAGAAATGTTG
ATGTTTCACGGGAAGTAAACGCATCAATCCTGGGGGGAAATGACATGTGA
CGGTGCGGTGCATGTCTTGATCTCTACTGTGATGTGATGTGATGCGATGT
CAAACTGCAGTAAATCAGAGTGCACATCTCATCACATCACACCACACCAC
ATCGCAGTACCGAGCGAAAAAAGGGGGTTAGCTCTTCTGGTGAGGTCCCG
ATTTTGATGTGATGTGATGTGATGTCAAACTACAGTGACTTAGAGTGCAC
ATCACATCACATCACATCACACCTCAGAGTGTAAGGAAGAGTTAACTCTT
CTGGTGAGGTCCCAGTTTCGATGTGATGTGATGTCAAACTACATTAAATT
AGAGTACATATCACGTTACAATACCGAGTGAAACGAGGTTTAACTCTCCC
GGTTGGGTCCCACGTTTGGAACGGGGCCCGGAGCTTGCAAGCAACCGGAA
AAAAATAGCAGGGGAGAACGCAGCTCTGGGGTCAAGTGCGTGTGAGAGGC
AGTTTCTTGTAACCCTGTTGCCCCTGCAAAATTGGACATACACCTATGAT
TTTATGGGAGGGGCAGACGCCGGTTAGGCGGAGTGCAACTCCTTTCGTGT
GGGGGTCGCACATGAAAGGCGTGCGTGTTTTTCCCGGCAGGGTGCATTTC
GGCAAAAATGTCCGTTTGTAGTGACGGTTTTTGGCGGCCTCGACGCCGCT
TTCTCGCGCTGTGGTGCACCGTTCGCGATGCGCCCGGTGCCTAAAGAATG
ATAAAAATTAGCGGCACCTTACACAAGTTGAAACACCGTTTGAGGCCCAG
TGTGGTGCGAGTATATCGCCTGAGGTGGCCAATTTACGCCCGAGATTTGC
ACCGCGACAGAGCCGGTACCAGTAATTTGACAGCCTACTGCAGGTACGGA
GGGGTGCCCCTCCCATACTTGCAATCTCGTACGGACCCCAGGGGTAGAAA
GGGCTAAGTTGAAGGGTGTTTAGCCGGCGGGTTTCGCCCCCTGGGGGTTG
ACCGGCGTGTCGATATGTACAGCGGTGTGATATGATGTGATTTGATGTGA
GGTGAGGTGTACATTGCTGTAATGTCCCATAGTTTGCAGAAAGTGTGATG
TGATATGATGTGACGTAATGTGATGTGAGGTGTACACTACTGCAATGTAC
CGTAGTCTGCCGCAGTGTGATGTGATATGGTGTGATGTGATGTGAGGTGA
GGTGTACACTGCTGTAGTGTACCGTAGTTTGCAGAAGTGTGATGTGATAT
GATGTGACGTGATGTATGTGATGTGGTGTGAGGTGTACATGGCAGTATTG
TACCGTAGTCTGCAGCAGTATGATGTGATATGGTGTAACATAATATGATG
TGAGGTGTACACCGCCCTAATGTACCGTAGTTTGCAGAAGTGTATGTGAT
ATGATGTGAGGTGTACACCGCTGTAATGTACCGTAGTTTGCTGAAGTGTG
ATGTGATGTGATGTGAGGTGTACACTGCTGTGATGCACCGTAGTTTGCAG
AAGTGTGGTGTGATGTGATGTGAGGTGAGGTGTACACTGATGTAATGTAC
CACAGTGTGCAGAAGTGTGATGTGATATGATGTGATGTGAGGTGTACATG
ACCGTAATGTACCGTAGTTTGCAGCAGTGTTATGTGATGCGATGTGATGT
GATGCCATGCGAGGTGCACACGGCTGTAATGTACCGTAGTTTGCAGAAGC
GTGATGTGATATGATGTGATGTGATGTTAGGTGTACACTGCTGTAATGTA
CCACAGTTTGCAGAAGTGTGATGTGAGGTGCACACTGCTGTAATGTACCG
TAGTTTGCAGAAGTATGATGTGATGTGATGCGATGTAATGTGATGTGATG
TGAGGTGGACACTGCTGCAATGTACCGTAGTGTTCCGAAGTGTGATGTGA
TATGATGTGATGTGAGGTGTACACTACTGTAATGTACTGCAGTCTGCAGC
AGTGTGATGTGATGCGATGCGAGGTGTACACTGCTGTATTAACACGAACA
ACACAGGGCGAGATGCAGGACCCCTCACTAAAGACCTTCACAGTGGCCCT
TCCTTGTAGCTCACCTGGGGGATTTGGTGTGGGGACGGGGAGAAAAGTAC
ACTGTGTATGTAATGTACTGTAGGTTGGACATCACGTCATATTACATCGC
GTTGTGTGCAGCAAGGGCATGTTGCCAACACGTCGATATACATGTCGACC
CTGCCTCCCCCCCTCCCTCTGCCTGACTCTTGTTTCGGGAGGGGGAGGGG
GGGAGGGCGTGCTTCGATTGCCGTTGATTTCATGTGTCTAGCCCTGAGTG
CCGCGCATTCGATCATGCACACTTGCGTAGGCAGCAAAACATCCACGCCC
TGGAGAGAATATGTTCACCGTTTGTCGGTATGCAGTGTGCACACGAATGT
ACTGTAGTTAGACATCACATCACATCACATCACATTGCTGAAGTAACTAC
ACTAACTGGTGCGTCGATGCGTCGACCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCGCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCCCCCTCCCTCCCTCCCTCCTTCCCTTCCTCCCCCCCCCCCCCCCGTCG
CTCATCGCGTCACTCCCGTGGCTGGGCCTGGGTACAGTGCTGGCTCTGGC
CCCCCGCCACGGCCTCCGAGATTTCTTCGCTTCAGGCGGTGAGCTTGTAT
ACTTGCTTACTTACACTACTTGTCGAGACATGTGCATTATAGACATTCTT
TGCTTCAGGCGGTGAACTTGAATACTCGCGTACTTGCGCTACCTGCCGAG
ACGTTTGCGTTATGGGCCACTTCTTTCTACCCCCCTGCAGCTACCGCTAG
CCTTCTGGGTTCTCTTCCCCCTTCAGATGCTGCTAGCTCCTGAGGCGACT
ACTACAGCAGTACTTATTTGCTCGGACTCTCCTCATGGAGTAAGTCATTA
GAGGACCTGCTATTCCTCCTGCCTCTCCAGGTGGATATTTCCAAACGAAG
CCTCCCGTCCACAGTACCGTAATCGGCGGAGAGATATTGCCCCCATGGGA
CAATTTTCGGGGGAATATTTCTGGCCGGGAGGGTCCTGAACTGTCCTGAA
AACTCCCCAAAAAGTTCCCGCAGGTTCTGAGGGAGATTTTCCGAGTTTTT
CCGCGCGAATCCGACCAGTAGTCGGCGAGAAAGGTTCTCCCGAAAATTGG
CATGGGGAGGCAAGATCTCTCCGCCGATTACGGTACTGTATGTGGACGTT
TGGAAACGAGGTCTCCTCAAAGAAGGGCCTCCCTGCGCTAACCCCCCCCC
CTTTCCTCTCCGCTTGAGGCGGTGAGGTTGTATACTTGCATGCTTATGCT
ACTTACTGTACGTACCGGGAAATTTCCAAACGAAGCTTTCCAACTACTTG
GACTTGTTTTTTTCCAGTGAGATTGTACACTTGCATGCTTACACTACTTT
ATCAAAAGAAGCCTCCCAGCTGCTTGGACGTTTCGAAACGAGGTATTGTT
TAACGAGGATCACCCTGCCCCCGGGTCCGCCACCACCGCCGCCGCCGCCT
TTGGCAGACGTCGTGTACGCCGTCCCGAACGACCTCCGGTCCGAGCCCCT
AAACACCGGGGACATGCGGGGCGCGATCGTTCTTGTGGACCGCGGGGAGG
TGGGTTGGATTGTGACTCAAGTAGTTAAGGCACTTGAGTGTCGAGCACGC
AAGTAGTTCAGAGACTTGAGTTTCTGGATACCCAAGTAGTTAAGAGACTT
GAGTCTCGAGAACCCAAATAGTTAGGCGATTGAGTTTCTGGATACCCAAG
TAGTTGAGAGACTGAGTTTCGAGGACCCAAGTAGCTAGGCGATTGAGTTC
AGGATACCCAAGTACGAGTAGTGAAAGAGTCTGAGTTTCGAGGACCCAAG
TAGTTAGGGGATTGAGTTCGGGATACCCAAGTAGTTGAGAGGTTATGTCA
AGCAAGCCAGTGAGTAAGCTTCGAAGTATATGCTTATTCGGAAGTATAGG
GGGGCTGGATTGTGAGTCGAGTCAGGGGCAGGGGGGGTATGGGCCTGACC
ACTCCCGCGCCATGAGCGGGGGGGTACTAAGTTACAGGCAAGCGAACTAG
TTAAAAAATTCTTTTCGGATTTTCGGATATCGACAACGGCTGAAATGCTG
CCCCGATCGCACTGCAAATCGACGTGGAATGAGCCGGGGGCACGGGCAAG
ACAGCCCGATCTCCTTGGCACCATACTGTCGAAAACGGACGGCGAAGGTG
TCCCCGGTTATCGGGAAAAACGAGTTTTTACCTACATCGACTGACTGTAG
TACAGTAGTGGTTTCTCCCTCCCGCACCTAATATGGTTTGCCAGGGGCGG
GAGGGAGATTGCTCCGCCGTCAACGGCGTGTGGTCAGTGGTCTCGGGGCT
ACAGTATTCACAACATGAGTACATACTAGCAGTATAGAGTGAGCAGAGTA
TACCGTCAACACCACGTGGTCAATGGTCTTGGGACTACGGCAAGCACAAC
GTGAATACAATACACATGCGAGTATGTATATCCTGCAGATTTCAAGGAGG
TATTTACAGTCTCGCCCGCATGAAATTTTTTAGTCTTCTCCTAGAGATCG
AGCGCGTAGAGCAGTACTTGAGTACAACAAAAACTGGCAGGTGATAATGT
GCATTGATTCGATTGCGTGCCTTTACAAAGAGAACATAAACAGCACGGGC
GCGTCGGGCTACCCAAACTGTTTTTTTTTCCTGGTACCTGTAGAGACGGT
CTCTCTTTGCTTTGACGGTTACAGTTAGACAGCTACACTACACAGTTACA
CAGGGACTTCACCGAGGATACTCGGATAGATCTTTTCCGAAGCGGCATCC
TCCACACAGCGAGCGTGGACTAGCCGCTGATGGTGGTACTCGTCTATACA
CATACTTCGAAGCATTTCGAAGTACGCGCTGTACCCATGGCAGACAGGGT
TGCTATTGCTCATAGAGACCCATGCTTCCAAAGAATACTGTATTCACGTC
AGACAGGGTTGTTGTCACTCGTACGTGGTATACACTTACACATGCTTCGA
AGCACGTAGTTTACTCATGGCGGACAGGGTTGTTATTTCTCGTATGCGAA
GCATATGCGTCCTTCGAAGTACGTACTGCACTCACGGCGGACAGGGTTGC
TATTGCTCGAATATAGACATCCTTCGAAGTACGTGCTGCACTCACGGCGG
ACAGGGTTGCTATTGCTCGTATATATACATGCTTCGAGCTACGTGCTGTA
GTGTACTCATGGCAGACAGGGTTGTTAAGTGTACACATCCTTCGAAGTAT
GTACTGCACTCGTGGCAGACAGGGTTGCTATTACTCGTATACACACATGC
TTCGAGCTACATGGTGCACTCATGACAGACAGGGCTGGTGCTGCTCGTAT
GCGAAGTATACACATCCTTCGAAGTACGCACTGCACTCACGGCAGACAGC
GTTGCTATTGCTCGTACATACCGTACACATGCTGCGAAGTACGTACCGTA
CTCATGGCGGACAGGGTTGGTATTACCCCATGTCCTCTGCCCGCCACCAA
CCGACCGCCGGCCCAGTATACTCCGCTCCGGGCCACCAATGTGATGTGAT
GCCAAACTACCGTATTGTTCCTGTTAATACTGCACATTAGAGTTCACAGT
ACATCACATTACATCACATCTCAGTATATAGGCACTCGGCCATACCAATC
AAACAGTGACTGCGAGCGGATCGCGGGGAGGCCGGGCGTGAATCTGTCGA
CCCCAGCGGCCGAGCGCTTAACCCTTTTGCCCTGCTAAATTGGACTTATC
CACTAAAACGCTGTGATTATACGGACCCCCAGGGGTAAAAGGGGTCACGG
TGATACGCTGCTGCAGGCCGGAAGAGAAACTATAAACTATTTGCGTGGGA
ACGGTGCACCTCCGTCGCATGTCTCGCCCGTGATGAGGACCTATTTTGTT
CGTACACTCTGCCCCCCCCCCCCCTCTCTCTCTGTCTCTCTGTCTCTCTC
CCTCCCTCCCTCCCTCCGTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCCTCTCTTCGTCCCTCCTTCCCTTCCCTTCTCTC
CCCCTCTCTTCTCCCTCTCCGTGTCTCTCCCCCTCCCTGTCCCTGCCACC
CTCCCTTCCTCCACACTTACCTTTCCCTCCATCCGAAAATGCCCGCCCCC
GCCCCGTCCCAGGTCCCCATCGTCGAAAAGATCACGCGTGCACAGGGCGC
TGGGGCCGCTGGGGTAGTGGTCATTGATAACGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig82:289980..297463-

>mRNA_S-ischiensis_contig82.19918.1 ID=mRNA_S-ischiensis_contig82.19918.1|Name=mRNA_S-ischiensis_contig82.19918.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig82:289980..297463- (Schizocladia ischiensis KU_0333)
AAGCTGTCCTGGTCTGTGTACATTCGCCGCCGTTTCGCGGGCGAACTCAT
CAGCAGGGTTTGCTCGGAGCTTTTTGACATGGGTGCGTTAGCATGCCCGA
GCGACCGGGGATGGCCCGTAACACGTCTGGTAAGGGCCGCTTGCGCTGCG
CTGCTCGTGGCGGTGGGAAGCTCAGCTAGGAACGGGAAGGAGAGGACGGC
CATGGGGGGGAGCTTGGTCAGGATCGCAATGCGGGCGCGAGGCCGCGCAG
ACCTTGAGCCGCAGTACCCTTTAGTGTACTTGCACTTCTGTTTGGGGTGC
CCAACTCCGGCCATGGAGGGTTCAATGGAAGCTGTCCTGGTCTGTGTACA
TTCGCCGCCGTTTCGCGGGCGAACTCATCAGCAGGGTTTGCTCGGAGCTT
TTTGACATGGGTGCGTTAGCATGCCCGAGCGACCGGGGATGGCCCGTAAC
ACGTCTGGTAAGGGCCGCTTGCGCTGCGCTGCTCGTGGCGGTGGGAAGCT
CAGCTAGGAACGGGAAGGAGAGGACGGCCATGGGGGGGAGCTTGGTCAGG
ATCGCAATGCGGGCGCGAGGCCGCGCAGACCTTGAGCCGCAGTACCCTTT
AGTGTACTTGCACTTCTGTTTGGGGTGCCCAACTCCGGCCATGGAGGGTT
CAATGGTGCTGGCTCTGGCCCCCCGCCACGGCCTCCGAGATTTCTTCGCT
TCAGGCGTGCTGGCTCTGGCCCCCCGCCACGGCCTCCGAGATTTCTTCGC
TTCAGGCGACGTCGTGTACGCCGTCCCGAACGACCTCCGGTCCGAGCCCC
TAAACACCGGGGACATGCGGGGCGCGATCGTTCTTGTGGACCGCGGGGAG
ACGTCGTGTACGCCGTCCCGAACGACCTCCGGTCCGAGCCCCTAAACACC
GGGGACATGCGGGGCGCGATCGTTCTTGTGGACCGCGGGGAGGTCCCCAT
CGTCGAAAAGATCACGCGTGCACAGGGCGCTGGGGCCGCTGGGGTAGTGG
TCATTGATAACGGCGTCCCCATCGTCGAAAAGATCACGCGTGCACAGGGC
GCTGGGGCCGCTGGGGTAGTGGTCATTGATAACGGC
back to top