mRNA_S-ischiensis_contig11.2134.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2134.1
Unique NamemRNA_S-ischiensis_contig11.2134.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1421689..1422918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.5713103-CDS-S-ischiensis_contig11:1421689..14219241622815577.5713103-CDS-S-ischiensis_contig11:1421689..1421924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1421690..1421924 -
1695739781.497399-CDS-S-ischiensis_contig11:1421689..14219241695739781.497399-CDS-S-ischiensis_contig11:1421689..1421924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1421690..1421924 -
1622815577.5823095-CDS-S-ischiensis_contig11:1422808..14229181622815577.5823095-CDS-S-ischiensis_contig11:1422808..1422918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1422809..1422918 -
1695739781.5073402-CDS-S-ischiensis_contig11:1422808..14229181695739781.5073402-CDS-S-ischiensis_contig11:1422808..1422918Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1422809..1422918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2134.1prot_S-ischiensis_contig11.2134.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1421690..1422918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2134.1

>prot_S-ischiensis_contig11.2134.1 ID=prot_S-ischiensis_contig11.2134.1|Name=mRNA_S-ischiensis_contig11.2134.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
HGSGAARRRRRRRGGSDSKPATGHAGIVFSVGALLSRSSHSMELAPPPLV
EFLLAGACSSMARMPPGPSKMPNARAVSCPPRGRGTSGAGTMPSFSRRAA
GSSTISWVKESGAGE
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mRNA from alignment at S-ischiensis_contig11:1421689..1422918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2134.1 ID=mRNA_S-ischiensis_contig11.2134.1|Name=mRNA_S-ischiensis_contig11.2134.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1230bp|location=Sequence derived from alignment at S-ischiensis_contig11:1421689..1422918- (Schizocladia ischiensis KU_0333)
CACGGGAGCGGTGCAGCAAGGCGTAGGCGGAGGCGGCGGGGCGGGTCAGA
TTCAAAGCCGGCGACCGGCCATGCGGGTATTGTTTTTAGCGTGGGCGCGC
TGCTCTCCAGGTGGGCAACACAAGCAAGGGTAGGTGCAGCTTGCTTAGCT
ACCAGGTCGAAGACACGGCATCAACTACCAGTACTTTCAAGTAGTTTTCG
GCAGTAATTGTACCCGAATGAAAGCATGTCTGGTTGGCATGACATTCCCG
GGGTCCCTGGACGGGATGGGAGCGTCTGTGCTTCGAAGTACTTGACTTCC
ATACTCTACAAAGTGAACGAGAGCAGCCGTGCGAGCTTTGCACCCCCTCC
CCTCGCACCTCCTGCCCCCCACGTGGACTCGCCCCCCCCCCGCCCTCCAT
CAACCCCGTGCTCCCTGCCACCCCCCTCCCGTCCTCCTCCCTCCGCCCCT
CTCCCCCACCTCTCCTCCTCTGTCCCCCTGCGCCTACCCCCCACCTATTC
TATCCCCTCCCTCCATCTGGCTCTTCTTCCCACCTCCTCTAACCCCCTCC
GTGCCTCCCTCCCTGCCTCCCTCCCTTCCTCCCTTCCTCCTTGCCTCCCT
CTCTCCCTGCCCTTCCTCCCCACCCCCCTCCCCACCCCCCCCCCCCCGGC
ACTGCCTCCCTCCTCCGTACACTCCCTCCCTCTCTCCCTCCCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCCC
TCCTTCCCTCCCTCCCCCCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCTT
CCCTCCCTCCCTCCCTCCCTCCCCCTCCTTCCCTCCCTCCCTTCCCCCTC
CCCCCTCCCCCCCCCCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCCCTACCCCTACCTCCCTCCCTCCCTCCCCTCCCCCCCCCCCCCTCACC
CCCTCCCTGCTCACCGTGCTGTCCTTCCCGTGCGCCATGTGCAGGTCGTC
GCACAGCATGGAGTTGGCCCCCCCGCCCCTCGTCGAGTTCCTCCTGGCCG
GCGCCTGCTCCAGCATGGCCAGAATGCCCCCGGGCCCCTCCAAGATGCCC
AATGCCCGGGCCGTGTCGTGCCCCCCCAGGGGGAGGGGGACCTCGGGGGC
GGGGACGATGCCGTCCTTCTCTAGAAGGGCCGCCGGATCTAGCACCATCA
GCTGGGTGAAGGAGAGCGGGGCGGGCGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1421689..1422918-

>mRNA_S-ischiensis_contig11.2134.1 ID=mRNA_S-ischiensis_contig11.2134.1|Name=mRNA_S-ischiensis_contig11.2134.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig11:1421689..1422918- (Schizocladia ischiensis KU_0333)
CACGGGAGCGGTGCAGCAAGGCGTAGGCGGAGGCGGCGGGGCGGGTCAGA
TTCAAAGCCGGCGACCGGCCATGCGGGTATTGTTTTTAGCGTGGGCGCGC
TGCTCTCCAGCACGGGAGCGGTGCAGCAAGGCGTAGGCGGAGGCGGCGGG
GCGGGTCAGATTCAAAGCCGGCGACCGGCCATGCGGGTATTGTTTTTAGC
GTGGGCGCGCTGCTCTCCAGGTCGTCGCACAGCATGGAGTTGGCCCCCCC
GCCCCTCGTCGAGTTCCTCCTGGCCGGCGCCTGCTCCAGCATGGCCAGAA
TGCCCCCGGGCCCCTCCAAGATGCCCAATGCCCGGGCCGTGTCGTGCCCC
CCCAGGGGGAGGGGGACCTCGGGGGCGGGGACGATGCCGTCCTTCTCTAG
AAGGGCCGCCGGATCTAGCACCATCAGCTGGGTGAAGGAGAGCGGGGCGG
GCGAGGTCGTCGCACAGCATGGAGTTGGCCCCCCCGCCCCTCGTCGAGTT
CCTCCTGGCCGGCGCCTGCTCCAGCATGGCCAGAATGCCCCCGGGCCCCT
CCAAGATGCCCAATGCCCGGGCCGTGTCGTGCCCCCCCAGGGGGAGGGGG
ACCTCGGGGGCGGGGACGATGCCGTCCTTCTCTAGAAGGGCCGCCGGATC
TAGCACCATCAGCTGGGTGAAGGAGAGCGGGGCGGGCGAG
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