mRNA_S-ischiensis_contig11.2111.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2111.1
Unique NamemRNA_S-ischiensis_contig11.2111.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2111.1 vs. uniprot
Match: A0A6H5KLF7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.610e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:  228 GVAAESSGTVNA-TRFCECPVCGKRVIMELCGQHLDMECSG 347
            G  A  +G   A TRFCECPVCGKRV++E+C +HLD EC+G
Sbjct:  136 GARAGGAGNAEALTRFCECPVCGKRVLIEMCSKHLDTECNG 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLF7_9PHAE1.610e-660.98RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1274614..1277449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-20_004640.1
Exons2
Model size706
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2111.1prot_S-ischiensis_contig11.2111.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1274634..1277449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3751905-UTR-S-ischiensis_contig11:1274613..12746331622815577.3751905-UTR-S-ischiensis_contig11:1274613..1274633Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1274614..1274633 +
1695739781.4033227-UTR-S-ischiensis_contig11:1274613..12746331695739781.4033227-UTR-S-ischiensis_contig11:1274613..1274633Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1274614..1274633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3872647-CDS-S-ischiensis_contig11:1274633..12749121622815577.3872647-CDS-S-ischiensis_contig11:1274633..1274912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1274634..1274912 +
1695739781.4136305-CDS-S-ischiensis_contig11:1274633..12749121695739781.4136305-CDS-S-ischiensis_contig11:1274633..1274912Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1274634..1274912 +
1622815577.3979788-CDS-S-ischiensis_contig11:1277044..12774491622815577.3979788-CDS-S-ischiensis_contig11:1277044..1277449Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1277045..1277449 +
1695739781.4270587-CDS-S-ischiensis_contig11:1277044..12774491695739781.4270587-CDS-S-ischiensis_contig11:1277044..1277449Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1277045..1277449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2111.1

>prot_S-ischiensis_contig11.2111.1 ID=prot_S-ischiensis_contig11.2111.1|Name=mRNA_S-ischiensis_contig11.2111.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
MGLPLVQAQSIPDTSEDNADLGGTENNRGIGGRKTGAGNAFSTLMAASVS
SAWGGGVPAAAGKRRRSSKGVAAESSGTVNATRFCECPVCGKRVIMELCG
QHLDMECSGERNSSPDRAPQPRTRDAALATAAAEFALPEPQGSRGREAKN
HDLSRTGGGVVGGGGDGSGGGGSGSGDSLADAAYLPCPACEQTVRADLCG
QHLDTECAGRPVAGQLSGEKVEKLSVAM
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mRNA from alignment at S-ischiensis_contig11:1274614..1277449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2111.1 ID=mRNA_S-ischiensis_contig11.2111.1|Name=mRNA_S-ischiensis_contig11.2111.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2836bp|location=Sequence derived from alignment at S-ischiensis_contig11:1274614..1277449+ (Schizocladia ischiensis KU_0333)
CGGCGTCTCCGCCCCACGAGATGGGATTGCCTCTCGTGCAAGCTCAAAGC
ATCCCGGACACGAGCGAGGACAATGCCGACCTGGGAGGCACCGAAAACAA
CCGAGGGATCGGCGGAAGAAAAACTGGCGCGGGAAACGCATTCTCTACGC
TCATGGCTGCCTCCGTGTCAAGCGCCTGGGGGGGGGGAGTGCCGGCAGCC
GCGGGCAAGCGACGGCGCTCGTCTAAGGGCGTGGCGGCAGAGTCCTCAGG
CACCGTGAACGCCACGAGGTTCTGCGAGTGTCCCGTATGCGGGAAGCGGG
TGAGACAGACATGGCGCGATTACGAGCCCCGCCTGGCGACACAGTCTGTT
TCCCTCCGCTTGTTCCGGCACCTTGACTGGGGTAGGTGCTAGCACGGCAT
GCACGCGTATCCTCCCCTTCCCTAGGGTGGAGCACCTGACGTATGCCCGG
AGAGATTGTTTGTTTGTATCTCGCGACGCCACGCGAGTTAATTGCAAAAA
GATAAACAAGCGAGGGGGAAAGAAGAGGCATTCCTAGCCACGCGAGCTAC
GCGATAGTTTTTAAAACGAAAGGTGTGATAGAGAGCTATCGATTCCACAA
TTTGCAATCGAGGGAGAATAGACCTCCCTATGATAATTTCTGCCCGAATA
TCTCGGGAAAATCACTCGAATCTACCCGGATGGCAATAAATCCTGTTCAA
ATTATTGTCTCTCAGTTTTTACAACAGCAATCGAAAGAGTACAGTCAGAC
TCGTAGACCACCCAAAAACTATCGCGTAACTCGCGTGGCGTCGCGAGATA
AAAAGCAAACATGTCCTGGCGGGGGAATTACGAGCACAGGCTTGTTGCAC
TGAAATAGTCAATGGGCGATTGCGGCTGAACCACGATGAACTGGGGAATT
ACGAAACCGCCATGCAATTCGTCTCGACGAGACGAATTGATGGCGCTTTC
CAAAGGCACTGAAAATTTGATACTACTTGGCTTTAGTATTGGAGGTAGCT
GTTGACGGCCAGACCAACCCACCCAATTTCTGCGCCACGTGATGCCCAAA
GCGAAAAACTTCAATAAGAAATATTCGCAGGCCGGCCAGGCGATTACGAA
GAGCTACGAAGTATGTGCTAGGCTGTAGCCATCGCACACCCAGCTATCCT
GTCCGAGGGGACGTCGGGTTGGAAACCCTGCAATTTCGTAGAGATTATAA
GAAACTGCTGTGGGAGTATGATCTATCCCACATGGGAAACGCCAGGCTGC
CAGCCCAGGTGCCGAGGGCTGTATGGCCATCGACATGGAAGGGCAGGCCA
TCCGTAGACTGGTCGAGCCATATGGATCTGTGGAGATGGCTCACAGTGCG
CGGGAGTTACTCGTCGCATGAGCAGATGCGACGTGAACTGCTACAAAGTA
CTAACCGTGGAGAGTACACCGCAGCGATGGACGGGGCTTTGCGGCGTAGG
AGCGGGACGGTGTATTGGCAGCCAGCGCAGTCTCTCTATGGTCAGATGAT
CCCATCACCCTCGGAACCAGGATTAAAGATGAATTTGCAAGGGAAACTCG
GGTAAGGGGCGCGCCTCATGTTTCTGTTTTGGTCCGAATCCGTGCCGATA
TGGGCGAGTAGGATGTTGCGGGGATCACAAGGGGGGCGGGACCGGACCAC
CAAGTGTGACGTGTGCGTAGAGGAGGATGAGACAGTACAGCACTTTTATG
CTTGAGTGCCCCCACTACAACTCCGCCTGGATGATTCTACACGCTACTCT
CTCCAAAAGTACCTGCACTGATACCCAAACAAGTAGCTACGAAAGTTTTA
AAAGCGCGCCCACCAGGAAAGCATATAGCATCGCTTCTGGATCCCTCCGG
TGAGACTGCGCTGTGGCCCGAGAAAACCCAGCAAGGTACATTCTGTGGTT
CAAGCTCTTCTTGTGTCTGTGTGGTGTTTGTGGTTGGACCGAGTAGATAG
GGTAGATGGTGACCTTGGATATCCCCCCTCCATGCCCGGCACGGCGGGGG
ACCCCCCTCCTCTGCTGATCCTCGGTCCGGCAGGGGAGCCCCCCCCCCCG
CCCTGACTCTCACGTGTCAGGAGCTGCGGGGGTATGGACCCAACCACCCC
CCTGCGGGGGGGGGGTGGTCCCTCCCTCCCACCCTGGCTTGCCAGAGGGG
GGAGGGAGACTGCTCCGCCGTCAACAGCGCGTGGTCAATGGTCTTGGGAC
TATACCACGGCAAGCACAACGTGAGTACGAAGTACATACTACGCAATACT
GTGTAGTATATATTGCACAAGGCACAATTCGTTGTTCTCGATAGAGAGTT
ATCGATTGACAAGTCCCGCGACTATGTACTGTAGTACTCAGGTGTTCCAC
CTTATTGTACCGCCGTCTGGGATCATTGAGTAAGAAGCCGTGCTCTGCCC
CTATTCTCCTCATGGACGCTCCCCACACCAGGTCATAATGGAATTGTGCG
GCCAGCACCTGGACATGGAGTGCAGTGGGGAGCGCAACTCCAGCCCTGAC
CGGGCCCCACAGCCCCGCACTAGAGATGCAGCCCTGGCGACAGCAGCTGC
AGAGTTTGCATTGCCCGAGCCCCAGGGATCTCGCGGCAGGGAAGCCAAAA
ATCACGACCTGAGCCGCACTGGTGGGGGTGTGGTGGGCGGCGGCGGCGAT
GGCAGTGGCGGTGGTGGCAGTGGCAGTGGGGACTCATTGGCAGACGCCGC
GTACCTGCCTTGCCCTGCCTGCGAGCAGACTGTTCGCGCGGACTTGTGCG
GCCAGCACTTGGACACAGAATGCGCGGGCAGGCCCGTGGCCGGGCAACTC
AGCGGTGAGAAGGTTGAGAAGCTCAGTGTAGCAATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1274614..1277449+

>mRNA_S-ischiensis_contig11.2111.1 ID=mRNA_S-ischiensis_contig11.2111.1|Name=mRNA_S-ischiensis_contig11.2111.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig11:1274614..1277449+ (Schizocladia ischiensis KU_0333)
ATGGGATTGCCTCTCGTGCAAGCTCAAAGCATCCCGGACACGAGCGAGGA
CAATGCCGACCTGGGAGGCACCGAAAACAACCGAGGGATCGGCGGAAGAA
AAACTGGCGCGGGAAACGCATTCTCTACGCTCATGGCTGCCTCCGTGTCA
AGCGCCTGGGGGGGGGGAGTGCCGGCAGCCGCGGGCAAGCGACGGCGCTC
GTCTAAGGGCGTGGCGGCAGAGTCCTCAGGCACCGTGAACGCCACGAGGT
TCTGCGAGTGTCCCGTATGCGGGAAGCGGATGGGATTGCCTCTCGTGCAA
GCTCAAAGCATCCCGGACACGAGCGAGGACAATGCCGACCTGGGAGGCAC
CGAAAACAACCGAGGGATCGGCGGAAGAAAAACTGGCGCGGGAAACGCAT
TCTCTACGCTCATGGCTGCCTCCGTGTCAAGCGCCTGGGGGGGGGGAGTG
CCGGCAGCCGCGGGCAAGCGACGGCGCTCGTCTAAGGGCGTGGCGGCAGA
GTCCTCAGGCACCGTGAACGCCACGAGGTTCTGCGAGTGTCCCGTATGCG
GGAAGCGGGTCATAATGGAATTGTGCGGCCAGCACCTGGACATGGAGTGC
AGTGGGGAGCGCAACTCCAGCCCTGACCGGGCCCCACAGCCCCGCACTAG
AGATGCAGCCCTGGCGACAGCAGCTGCAGAGTTTGCATTGCCCGAGCCCC
AGGGATCTCGCGGCAGGGAAGCCAAAAATCACGACCTGAGCCGCACTGGT
GGGGGTGTGGTGGGCGGCGGCGGCGATGGCAGTGGCGGTGGTGGCAGTGG
CAGTGGGGACTCATTGGCAGACGCCGCGTACCTGCCTTGCCCTGCCTGCG
AGCAGACTGTTCGCGCGGACTTGTGCGGCCAGCACTTGGACACAGAATGC
GCGGGCAGGCCCGTGGCCGGGCAACTCAGCGGTGAGAAGGTTGAGAAGCT
CAGTGTAGCAATGGTCATAATGGAATTGTGCGGCCAGCACCTGGACATGG
AGTGCAGTGGGGAGCGCAACTCCAGCCCTGACCGGGCCCCACAGCCCCGC
ACTAGAGATGCAGCCCTGGCGACAGCAGCTGCAGAGTTTGCATTGCCCGA
GCCCCAGGGATCTCGCGGCAGGGAAGCCAAAAATCACGACCTGAGCCGCA
CTGGTGGGGGTGTGGTGGGCGGCGGCGGCGATGGCAGTGGCGGTGGTGGC
AGTGGCAGTGGGGACTCATTGGCAGACGCCGCGTACCTGCCTTGCCCTGC
CTGCGAGCAGACTGTTCGCGCGGACTTGTGCGGCCAGCACTTGGACACAG
AATGCGCGGGCAGGCCCGTGGCCGGGCAACTCAGCGGTGAGAAGGTTGAG
AAGCTCAGTGTAGCAATG
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