mRNA_S-ischiensis_contig80.19852.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19852.1
Unique NamemRNA_S-ischiensis_contig80.19852.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:730397..730774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.3318195-CDS-S-ischiensis_contig80:730396..7307741622817307.3318195-CDS-S-ischiensis_contig80:730396..730774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 730397..730774 +
1695741013.6176958-CDS-S-ischiensis_contig80:730396..7307741695741013.6176958-CDS-S-ischiensis_contig80:730396..730774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 730397..730774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19852.1prot_S-ischiensis_contig80.19852.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 730397..730774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19852.1

>prot_S-ischiensis_contig80.19852.1 ID=prot_S-ischiensis_contig80.19852.1|Name=mRNA_S-ischiensis_contig80.19852.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
ATAAAPTPQAGSGSDSGGGGSCTPTRKWPAPTTRTQAPVPGPGLKQDTND
GRPGPPDPQTTPLAATPAVATAVAPGTPNMGAVTGATALTRLAGPAAAGP
PPSPLSDDRAPLLGAAAAAAAVAAAG
back to top

mRNA from alignment at S-ischiensis_contig80:730397..730774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19852.1 ID=mRNA_S-ischiensis_contig80.19852.1|Name=mRNA_S-ischiensis_contig80.19852.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig80:730397..730774+ (Schizocladia ischiensis KU_0333)
GCCACCGCCGCCGCGCCCACTCCACAGGCTGGCAGCGGCAGCGACAGCGG
CGGCGGCGGCAGCTGCACCCCCACCAGGAAATGGCCTGCCCCAACGACCC
GTACCCAAGCCCCCGTCCCGGGCCCAGGGCTCAAGCAGGACACCAACGAC
GGCCGGCCCGGCCCCCCGGACCCTCAGACCACCCCGCTTGCGGCCACCCC
TGCCGTGGCCACTGCCGTTGCACCTGGAACCCCAAACATGGGCGCCGTGA
CGGGTGCAACCGCCCTGACTCGGCTGGCGGGCCCCGCCGCGGCTGGACCG
CCTCCAAGCCCCCTCTCGGATGATCGCGCCCCCTTGCTCGGAGCGGCGGC
GGCGGCGGCGGCGGTGGCGGCGGCGGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig80:730397..730774+

>mRNA_S-ischiensis_contig80.19852.1 ID=mRNA_S-ischiensis_contig80.19852.1|Name=mRNA_S-ischiensis_contig80.19852.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig80:730397..730774+ (Schizocladia ischiensis KU_0333)
GCCACCGCCGCCGCGCCCACTCCACAGGCTGGCAGCGGCAGCGACAGCGG
CGGCGGCGGCAGCTGCACCCCCACCAGGAAATGGCCTGCCCCAACGACCC
GTACCCAAGCCCCCGTCCCGGGCCCAGGGCTCAAGCAGGACACCAACGAC
GGCCGGCCCGGCCCCCCGGACCCTCAGACCACCCCGCTTGCGGCCACCCC
TGCCGTGGCCACTGCCGTTGCACCTGGAACCCCAAACATGGGCGCCGTGA
CGGGTGCAACCGCCCTGACTCGGCTGGCGGGCCCCGCCGCGGCTGGACCG
CCTCCAAGCCCCCTCTCGGATGATCGCGCCCCCTTGCTCGGAGCGGCGGC
GGCGGCGGCGGCGGTGGCGGCGGCGGGCGCCACCGCCGCCGCGCCCACTC
CACAGGCTGGCAGCGGCAGCGACAGCGGCGGCGGCGGCAGCTGCACCCCC
ACCAGGAAATGGCCTGCCCCAACGACCCGTACCCAAGCCCCCGTCCCGGG
CCCAGGGCTCAAGCAGGACACCAACGACGGCCGGCCCGGCCCCCCGGACC
CTCAGACCACCCCGCTTGCGGCCACCCCTGCCGTGGCCACTGCCGTTGCA
CCTGGAACCCCAAACATGGGCGCCGTGACGGGTGCAACCGCCCTGACTCG
GCTGGCGGGCCCCGCCGCGGCTGGACCGCCTCCAAGCCCCCTCTCGGATG
ATCGCGCCCCCTTGCTCGGAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCG
GCGGGC
back to top