mRNA_S-ischiensis_contig80.19851.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19851.1
Unique NamemRNA_S-ischiensis_contig80.19851.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:727422..727778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.2835314-UTR-S-ischiensis_contig80:727421..7274511622817307.2835314-UTR-S-ischiensis_contig80:727421..727451Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 727422..727451 +
1695741013.5985956-UTR-S-ischiensis_contig80:727421..7274511695741013.5985956-UTR-S-ischiensis_contig80:727421..727451Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 727422..727451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.2946694-CDS-S-ischiensis_contig80:727451..7277781622817307.2946694-CDS-S-ischiensis_contig80:727451..727778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 727452..727778 +
1695741013.6082275-CDS-S-ischiensis_contig80:727451..7277781695741013.6082275-CDS-S-ischiensis_contig80:727451..727778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 727452..727778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19851.1prot_S-ischiensis_contig80.19851.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 727452..727778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19851.1

>prot_S-ischiensis_contig80.19851.1 ID=prot_S-ischiensis_contig80.19851.1|Name=mRNA_S-ischiensis_contig80.19851.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MKAASGRRTLADRNPGDGGLHDAAEKEKRLALLTLDDLEGDSGAWRTGTP
RTPTRVHEAKLPDLAEAQRKWGERLRSPPRDASTKGTSVRDRALLRLQQS
SAPVATTSP
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mRNA from alignment at S-ischiensis_contig80:727422..727778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19851.1 ID=mRNA_S-ischiensis_contig80.19851.1|Name=mRNA_S-ischiensis_contig80.19851.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=357bp|location=Sequence derived from alignment at S-ischiensis_contig80:727422..727778+ (Schizocladia ischiensis KU_0333)
GCAACCCCAACAGACCGGAGTTGGGGCACGATGAAGGCTGCCTCCGGGAG
GAGGACATTGGCGGATCGCAACCCGGGCGATGGTGGGCTCCACGACGCCG
CGGAGAAAGAGAAGCGGCTGGCGCTCCTCACACTAGATGACCTCGAGGGC
GACAGTGGAGCATGGAGAACCGGAACGCCCAGGACACCGACCAGGGTGCA
CGAGGCCAAGCTTCCAGATCTGGCCGAGGCACAGCGGAAGTGGGGCGAGA
GGCTGAGGAGCCCCCCCCGAGATGCATCGACGAAGGGTACCAGCGTCAGG
GATCGCGCATTGCTGCGCCTCCAACAGTCGTCGGCCCCGGTGGCAACAAC
TTCCCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig80:727422..727778+

>mRNA_S-ischiensis_contig80.19851.1 ID=mRNA_S-ischiensis_contig80.19851.1|Name=mRNA_S-ischiensis_contig80.19851.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig80:727422..727778+ (Schizocladia ischiensis KU_0333)
ATGAAGGCTGCCTCCGGGAGGAGGACATTGGCGGATCGCAACCCGGGCGA
TGGTGGGCTCCACGACGCCGCGGAGAAAGAGAAGCGGCTGGCGCTCCTCA
CACTAGATGACCTCGAGGGCGACAGTGGAGCATGGAGAACCGGAACGCCC
AGGACACCGACCAGGGTGCACGAGGCCAAGCTTCCAGATCTGGCCGAGGC
ACAGCGGAAGTGGGGCGAGAGGCTGAGGAGCCCCCCCCGAGATGCATCGA
CGAAGGGTACCAGCGTCAGGGATCGCGCATTGCTGCGCCTCCAACAGTCG
TCGGCCCCGGTGGCAACAACTTCCCCGATGAAGGCTGCCTCCGGGAGGAG
GACATTGGCGGATCGCAACCCGGGCGATGGTGGGCTCCACGACGCCGCGG
AGAAAGAGAAGCGGCTGGCGCTCCTCACACTAGATGACCTCGAGGGCGAC
AGTGGAGCATGGAGAACCGGAACGCCCAGGACACCGACCAGGGTGCACGA
GGCCAAGCTTCCAGATCTGGCCGAGGCACAGCGGAAGTGGGGCGAGAGGC
TGAGGAGCCCCCCCCGAGATGCATCGACGAAGGGTACCAGCGTCAGGGAT
CGCGCATTGCTGCGCCTCCAACAGTCGTCGGCCCCGGTGGCAACAACTTC
CCCG
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