mRNA_S-ischiensis_contig8.19774.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19774.1
Unique NamemRNA_S-ischiensis_contig8.19774.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: D8LC32_ECTSI (DUF4110 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC32_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.760e-50
Identity = 127/248 (51.21%), Postives = 148/248 (59.68%), Query Frame = 1 
Query:   34 EGAPALPLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGA-----SERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQ-GVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESREAERR 759
            E A   PLPRINPCLTVRGNTLYVYGGLLEVGDRE+TLDDCW+L+LNTR  W+ VQEGTMD++ W GE+D+        E  S+  Y D XXXXX                  DG                XXXXXXX        GVREE RQLQE L +DDP RTPQAGE + +F+ RT   WT E V+R   S      + EK LR+  FALA  R+ EL P L RLN LE  Q+ +E+REAE+R
Sbjct:  523 EEASPCPLPRINPCLTVRGNTLYVYGGLLEVGDREFTLDDCWSLELNTRVAWKRVQEGTMDEQMWKGEEDESEMGSEWGEEESDSDYSDXXXXXXGEEDRVKPVSAGMSCMTLDGGDAVENDGAAKKTAKXXXXXXXXXXXXXXXXGVREEIRQLQELLDVDDPNRTPQAGEVMRDFFDRTKLFWTTEIVRRRDESEVPLEAMTEKGLRRDAFALAGERYAELEPSLARLNALEAEQRGLEAREAEKR 770
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A836CMD6_9STRA (DUF4110 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.730e-47
Identity = 126/244 (51.64%), Postives = 151/244 (61.89%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXX----DGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQ----EKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESREAERR 759
            PLPRINP L VRGNTLYVYGGLLEV DREYTLDDCW+L+LN R EW+ +Q GTM+++ W  E+    SE++SEGG  DS          XXXXXXXX                           XXXXXXX  K + +G+R E R LQE+LG DDP RTP AGE L  FYARTA+ W  E ++ ++    E   LQ    EKE+R+  FALA+ARF EL P L RLNELE  Q  ME+R AE++
Sbjct:  509 PLPRINPALAVRGNTLYVYGGLLEVRDREYTLDDCWSLELNARTEWKNLQPGTMNEQAWKDEE---MSEQSSEGGDYDSEDDYLERQDEXXXXXXXXTASAGMTCLQLDDAERAVEVDPDEEAXXXXXXXXAKKRRGEGIRAEIRALQEQLGTDDPNRTPLAGETLRLFYARTANYWATEFLRAVEQRGTEERGLQQRWSEKEIRRDAFALAEARFAELEPALQRLNELEAEQLAMEARAAEKK 749
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: B8CD76_THAPS (DUF4110 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD76_THAPS)

HSP 1 Score: 154 bits (389), Expect = 4.770e-40
Identity = 104/230 (45.22%), Postives = 134/230 (58.26%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRL-QASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDME 738
            PLPRIN    V+GNTLY+YGG+LEVGDRE TLDDCW++DLN R +W C+  G M ++ W G D D  S  +S+ G  +S                       +G             XX XXXXXXX   A   G+REE   L+E+LGLD+ QRTP  GE  A+FY+RT   W  E V+ + QA+A     L  KEL++ GF LA  RF+EL P+L+RLNELE +Q++ E
Sbjct:  311 PLPRINCATVVKGNTLYIYGGVLEVGDREVTLDDCWSIDLNKRDKWTCIWSGQMHKQVWKGVDSDNDSYISSDQGGDESDEDEFAEFEAIA-----------EGDEGELDEEARKAAXXXXXXXXXXXXXA---GIREEISSLKEQLGLDNDQRTPLMGENKADFYSRTTEYWNMEAVKTVGQAAADRGEALSSKELKREGFQLANDRFDELKPILDRLNELETMQQEAE 526
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A662WPV3_9STRA (DUF4110 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPV3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.060e-35
Identity = 119/249 (47.79%), Postives = 146/249 (58.63%), Query Frame = 1 
Query:   46 ALPLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKA------------------QGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDME 738
            A P PRINP L +RG+TLYVYGG++E GDRE TLDDCW+LDL    EW+ +  GTMDQ+EW GE     SE     G  D XXXXXXXXXXXXXXXXXXXXX                            G A+A                  + +R E  +LQE+LGLDD  RTPQ GE L +F+ART +TW +E + R   + ++   L  KE+++ GFALA+AR+ ELLPVL RLN LE  QK+ E
Sbjct:  510 AAPCPRINPSLMIRGSTLYVYGGVVEDGDREITLDDCWSLDLKRLDEWKQLLAGTMDQQEWKGE----VSETE---GSSDGXXXXXXXXXXXXXXXXXXXXXGSIRTRAVEAKAAAVERAVEMLAQKAEGGDAEAAXXXXXXXXXXSKKDNHRRAIRAEMEKLQEQLGLDDIVRTPQMGENLRDFFARTDATWASEVMARPSTAERQ---LSIKEIKREGFALAEARYNELLPVLERLNALEIEQKEAE 748
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A7S2A2L1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2L1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.510e-35
Identity = 105/245 (42.86%), Postives = 137/245 (55.92%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSE--GGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASA----QETGPLQE----------KELRKGGFALAQARFEELLPVLNRLNELEGIQKDME 738
            PLPRIN  L VRGNTLYVYGGLLEVGDRE TLDDCW LDLN R  W C+  GTM ++ W G + D  S  +++  G  GD                        D     XXXXXXXXXXX X            +G+R+E  +L+ +L LDD  RTP  GE +A+FY+RT   W  + ++++   A    +ET  + +          KEL++ GFALA+ R+EEL PVL RLN+L+  Q++ E
Sbjct:  590 PLPRINAALVVRGNTLYVYGGLLEVGDREVTLDDCWVLDLNKRDGWTCLFGGTMHKQVWRGAESDNESYVSTDRMGDDGDFDEEDESDGEQELKGEDDNGPEDEDAKKAAXXXXXXXXXXXXX------------RGIRDEIAKLKGQLDLDDANRTPMMGEAMADFYSRTTEYWNQKAMEKIAGGADSEDKETESVADGSGGGERLTAKELKREGFALARKRYEELTPVLERLNDLDAQQREAE 822
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: K0RVK6_THAOC (DUF4110 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RVK6_THAOC)

HSP 1 Score: 142 bits (358), Expect = 7.740e-35
Identity = 104/254 (40.94%), Postives = 136/254 (53.54%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDD----------------GASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQA--SAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESREAERR 759
            PLPRIN    VRG+TLYV GG+LEVGDRE TLDD W+ DLN R  W C+  GTM ++ W G D D                G SE   EGG  D+                       DG             XX XXXXXXX  +   +G+R E   L+E+LG+DD  RTP+AGE +A+FY+RTA TW A+     +   +A     +  KE+++ GF +A+AR++EL P L RL ELEG ++D + R A R+
Sbjct:  527 PLPRINSAAAVRGSTLYVLGGVLEVGDREVTLDDGWSYDLNGRDGWTCLWPGTMHRQVWRGIDSDVDGDSYVSSDQGGELDGGSESEDEGGGFDTIDE--------------------DGPEAGMTEEERKKAXXXXXXXXXXXXR---RGIRHEIASLKERLGVDDESRTPRAGEAVADFYSRTADTWNADAAASSETRDAADRGEAMSAKEVKRAGFEMARARYDELRPALERLAELEGEERDGDERRAARK 757
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A7S1VQ51_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQ51_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.310e-34
Identity = 108/233 (46.35%), Postives = 141/233 (60.52%), Query Frame = 1 
Query:   46 ALPLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRRE-WRCVQEGTMDQREWLG---EDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQ-----ASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELE 717
            A PLPRIN  L +R N LYVYGGLLEVGDRE TLDDCW+LDL  +RE W C+ EGT+ ++ W G   +DDD     T                   XXXXXXXXX  X  XXXXXX           XXXXXX       G+R+E   L+ +LG+DD  RTP AGE LA+F++RT+  WT +  +  +     +++++ G L  KE+++ GFALAQ R++EL P+L+RL EL+
Sbjct:  199 AEPLPRINANLVIRSNVLYVYGGLLEVGDREVTLDDCWSLDLRKQREGWTCLWEGTLHKQVWRGAVHDDDDSYISATG------------------XXXXXXXXXEFXXXXXXXXXGLDEEARKQAKXXXXXXXXXXXXAGIRQEIADLKSQLGVDDANRTPLAGEALADFHSRTSEYWTGQAAEAFEKQDDSSNSKDEGGLSHKEMKRKGFALAQERYDELRPILDRLAELD 413
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: W2PER2_PHYPN (DUF4110 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PER2_PHYPN)

HSP 1 Score: 136 bits (342), Expect = 8.670e-33
Identity = 139/255 (54.51%), Postives = 170/255 (66.67%), Query Frame = 1 
Query:   34 EGAPALPLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGK------------AKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESREAERRG 762
            E A   P PRINP + +RG+TLYVYGG++E GDRE TLDDCW+LDL    EW+ V  GTM  + W GE  +  +E +S+      XXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXX XXXXXXX               +  + +R E  +LQE+LGLDD +RTPQ GE L +F+ART +TW  E +QR      E   L  KE+++ GF LA+AR++ELLPVL RLN LE  QK+ E   A ++G
Sbjct:  545 EPAAPAPCPRINPAVMIRGSTLYVYGGVVEDGDREITLDDCWSLDLKRLEEWKEVLPGTMSHQIWKGEVSE--TEESSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSHRKAIRAEMEKLQEQLGLDDIERTPQMGENLRDFFARTDATWAKEVMQRPSTVEHE---LSIKEIKREGFLLAEARYKELLPVLERLNALELEQKEAEEMYALKKG 794
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A7S3QD68_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD68_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.800e-33
Identity = 105/233 (45.06%), Postives = 139/233 (59.66%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLG--EDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESR 744
            PLPRI   + VRGN+L +YGG+LEVGDRE TLDD W+L+L  R EW C+ EG+M ++ W G   DD+ +   T  G  G+  XXXXXXX               +       XXXXXXXXX XXXXX         G+REE + L EKL +D+P+  P+ GE+LA+FYAR+   W  +++  + +S      L  KEL++ GF LA+  FEEL PVL+RL E+E  QK  + R
Sbjct:  575 PLPRIKAQIVVRGNSLILYGGILEVGDREVTLDDVWSLELQKREEWICIHEGSMHKQVWKGVASDDEKSYISTDAGTGGNESXXXXXXXFSEFYDIVDDNLLDTEAREAAKAXXXXXXXXXXXXXXX---------GIREEVKLLNEKLTMDEPESAPRLGEELADFYARSTQYWGTKYIDSIASSTSNCEELSSKELKREGFNLAKQHFEELKPVLDRLAEIEISQKGDDDR 798
[Close]
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Match: A0A8K1CJ50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ50_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 1.420e-32
Identity = 130/229 (56.77%), Postives = 158/229 (69.00%), Query Frame = 1 
Query:   52 PLPRINPCLTVRGNTLYVYGGLLEVGDREYTLDDCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXMXXXXXXXQGKAKAQGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQASAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDME 738
            P PRINP L +RG+TLYVYGG++E GDRE TLDDCWALDL    EW+ +  GTM ++ W GE  +  +E +SE      XXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXX XXXXX    +   + +R E  +LQE+LGLDD  RTPQ GE L +F+ART   W     QR     ++   L  KE+++ GF +A+ R+ ELLP+L RLN LE  QK+ME
Sbjct:  491 PCPRINPALIIRGSTLYVYGGMVEDGDREITLDDCWALDLKRLEEWKELLPGTMSEQVWKGEVSE--TEESSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNDR---RAIRAEIEKLQEQLGLDDINRTPQMGENLRDFFARTQEYWATVIGQRPDTIERQ---LNIKEIKREGFVMAEERYNELLPILERLNVLEAEQKEME 711
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC32_ECTSI1.760e-5051.21DUF4110 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CMD6_9STRA4.730e-4751.64DUF4110 domain-containing protein n=1 Tax=Tribonem... [more]
B8CD76_THAPS4.770e-4045.22DUF4110 domain-containing protein (Fragment) n=1 T... [more]
A0A662WPV3_9STRA3.060e-3547.79DUF4110 domain-containing protein (Fragment) n=2 T... [more]
A0A7S2A2L1_9STRA3.510e-3542.86Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0RVK6_THAOC7.740e-3540.94DUF4110 domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S1VQ51_9STRA4.310e-3446.35Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
W2PER2_PHYPN8.670e-3354.51DUF4110 domain-containing protein n=11 Tax=Phytoph... [more]
A0A7S3QD68_9STRA8.800e-3345.06Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K1CJ50_PYTOL1.420e-3256.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3826892..3832281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue8.6e-46
Seed eggNOG ortholog2880.D8LC32
Preferred nameKLHDC4
KEGG koko:K20781
KEGG Pathwayko00514,map00514
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGsKOG1230@1,KOG1230@2759
COG Functional cat.L
CAZyGT96
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-20_004250.1
Exons6
Model size765
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19774.1prot_S-ischiensis_contig8.19774.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3826892..3832280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817303.0702417-CDS-S-ischiensis_contig8:3826891..38270141622817303.0702417-CDS-S-ischiensis_contig8:3826891..3827014Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3826892..3827014 +
1695741010.3392787-CDS-S-ischiensis_contig8:3826891..38270141695741010.3392787-CDS-S-ischiensis_contig8:3826891..3827014Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3826892..3827014 +
1622817303.0835323-CDS-S-ischiensis_contig8:3827894..38279621622817303.0835323-CDS-S-ischiensis_contig8:3827894..3827962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3827895..3827962 +
1695741010.3650203-CDS-S-ischiensis_contig8:3827894..38279621695741010.3650203-CDS-S-ischiensis_contig8:3827894..3827962Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3827895..3827962 +
1622817303.094456-CDS-S-ischiensis_contig8:3828432..38286431622817303.094456-CDS-S-ischiensis_contig8:3828432..3828643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3828433..3828643 +
1695741010.3772655-CDS-S-ischiensis_contig8:3828432..38286431695741010.3772655-CDS-S-ischiensis_contig8:3828432..3828643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3828433..3828643 +
1622817303.10551-CDS-S-ischiensis_contig8:3829389..38295091622817303.10551-CDS-S-ischiensis_contig8:3829389..3829509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3829390..3829509 +
1695741010.3875813-CDS-S-ischiensis_contig8:3829389..38295091695741010.3875813-CDS-S-ischiensis_contig8:3829389..3829509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3829390..3829509 +
1622817303.1168203-CDS-S-ischiensis_contig8:3830870..38309841622817303.1168203-CDS-S-ischiensis_contig8:3830870..3830984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3830871..3830984 +
1695741010.4003134-CDS-S-ischiensis_contig8:3830870..38309841695741010.4003134-CDS-S-ischiensis_contig8:3830870..3830984Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3830871..3830984 +
1622817303.1278133-CDS-S-ischiensis_contig8:3832154..38322801622817303.1278133-CDS-S-ischiensis_contig8:3832154..3832280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3832155..3832280 +
1695741010.4120731-CDS-S-ischiensis_contig8:3832154..38322801695741010.4120731-CDS-S-ischiensis_contig8:3832154..3832280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3832155..3832280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19774.1

>prot_S-ischiensis_contig8.19774.1 ID=prot_S-ischiensis_contig8.19774.1|Name=mRNA_S-ischiensis_contig8.19774.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=254bp
GEADGATTEGKEGAPALPLPRINPCLTVRGNTLYVYGGLLEVGDREYTLD
DCWALDLNTRREWRCVQEGTMDQREWLGEDDDGASERTSEGGYGDSDSDD
DDEEGEEEEEEEEEDDEEEDGEEDEEKEEGGRDERKMKKEKEKKQGKAKA
QGVREEARQLQEKLGLDDPQRTPQAGEKLAEFYARTASTWTAEHVQRLQA
SAQETGPLQEKELRKGGFALAQARFEELLPVLNRLNELEGIQKDMESREA
ERRG
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mRNA from alignment at S-ischiensis_contig8:3826892..3832281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19774.1 ID=mRNA_S-ischiensis_contig8.19774.1|Name=mRNA_S-ischiensis_contig8.19774.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5390bp|location=Sequence derived from alignment at S-ischiensis_contig8:3826892..3832281+ (Schizocladia ischiensis KU_0333)
gGGGAGGCGGACGGGGCGACCACCGAGGGGAAGGAAGGCGCCCCGGCTCT
CCCTTTGCCTCGCATCAACCCGTGCCTGACGGTGCGGGGCAACACCCTGT
ACGTCTACGGCGGGCTTCTGGAGGTGGGCGCGCTACTTACCTACTACTCT
CGAAGTAGCAGTGATGGGATATCAATCAGTAGAAGGTTATCGGGCTCAAC
TGATGTTGTGGGTGGCGTTACTAACTATGAAGCACTTGGATTTAGTGTGG
GTCAAACTATCGAATATCGACTATCGATATATATATATATATATATATCA
GCATTGTCGACAAATAGGTTGATTTGCTTAGATATTGCATCATTTGCTTA
CTAGTACCTACTTTCTTGGGTCATGCTGTGCGGTGCGCGGGCAGGCGGGC
GCGAGAGGGGCTGCGGGCGACCGAAAAAAGGGGTGGTCGGGTTCTTGGCC
CCTGTTTTTTGTTTTTGTTTTTGAGTGGGGCGGTTCGGACGGGTTTGGAG
CGTGCTGGCCAGCACGTGCCCCAGCATCCCACCCATGATACTGTACTGGG
CACTGCTATGTACTTCGAAGTATGCACTCGTACGCGAGCACTTACTGTAG
TAGTCGTCCGAGTCCTTCCCCCCCCCCTGGCCGCTTCCCCCCTGCCCTCC
TCCCCCGCCTCCCCGCCTCCCCCTCCCCCCCGCCCTCCCTCCCCTCTCCT
CCTCCCCCCCCGCCTCACCGTCGCCCTCACTGTCACCATCACCCCCCCCC
CCCCCTCCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCCCCTCCCACTCCCGCTCCCACTCCCGCT
CCCCCTCCTCCTCCTCCCTCCTCCTCCTCCACCTCCCCCCCCCTCCCTCT
CCCACTCCCCTCTCCACCCCCCCTCCCTCCCCCGCCATCCCCCTTCCCCT
TATCCTCCCCCTCCCCCTCGTTCTCCTCCTCCTCCTCCCTTCTCCGGCAC
CAGGTCGGTGACCGCGAGTACACCCTAGACGACTGCTGGGCGTTGGACCT
CAACACGCGCCGGGAGTGGAGGCAAGTGTGTGCTTCGAAGTACAGGAGGG
GAGGGTGAATGCCATGGACCAGCAGGCCTGCCCTATTTAGCGTCCAAATA
GCTACTCGTGTCGGAAGGCAAACCCAAAGTTTCGACTTAGGGCGCGCGCA
AGGGTATGTCGCAAGACAAGCCAATGAGTGCACACTTCGAAGTATATATT
ACTGGACCCTATCCCTAACCCTAACCCTAGGTTGAACGCCTGCCTAATTT
AGCCTCGACCCTGTGCCGATTTTTCGGAGGAGCTTTGGTTGAAGATCTCG
CTTCCTCCCCCGTCCCGTGTCAGTTTTTGTGTATGAAGAAAAGAAGCGAG
TGGAAAATAGAGGTGATCCTACTTTTGGGAGTTTTTCTTTTTGTTTGGGG
GGGGAGTGTTAGGATTAGTTCGAACCACAGCCATGAGCGACCCCGTCCCA
ATCCCAAAGCCTCACGCCACCCCCCAAACCTCACCCCCCAGGTGCGTGCA
GGAGGGCACCATGGACCAGCGGGAGTGGCTGGGCGAGGACGACGACGGCG
CGTCCGAGCGGACCAGCGAGGGGGGCTACGGCGACAGCGACAGCGATGAC
GACGACGAGGAGGGCGAGGAAGAGGAGGAGGAGGAGGAGGAGGACGATGA
AGAGGAAGATGGCGAGGAGGACGAGGAGAAGGAGGAGGGGGGCAGGGATG
AGGTGAGGGGGCGGGGCGGGGCACCTCGAGAAAAGGCGTGGGCCTACACG
CGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGCATGCA
TTTGTGCGTGCGTTAGTACTTTTGTGGGTGGGTTGTGCATGTGTGCGTGT
GTGCGTGCGCGTGCGTGCATGCATGCGTGCGCGCGTGCGTCCGTGCGTGC
GTGCGCCTGCTCGTATTTTGCTCGCCTTGGCGTTGCTCGGGAGTCATCCA
CCCCCAGGGGCACACGTTGCTGCGTGAGGGGGGGGGGGCACAGCGGGGGG
GAGGGGAGGCGAGGGAGGGAGGGGAGCATGCGTCGTGCTTTGGGCGTGCT
GTTGCAGCACATCAATGCTTCGGAAGTAGAATTTCTTACTATTACCTTGC
AAATACCATGCAACGAAGATTGTTGCCACGGTTGAGGTCTTTAGTGACGT
GGCCTGCACCTCCCCCCGTGTTTTTCCTGTTGGTAGTACATGTGGCAATT
GGCGTTTTGAAATCAGTGAACAAAACGCCAACGACGGCTACACTGCCCTC
CCCTCAAGAGCACACACAACTTGATTTTTGTCGTGTTGCCCGCATAGCAG
ACGGGGGACCGATCCGGGTTTGAGAGTGACGCAACACGTGTGTGTGTGTG
TGCGTGCGCGTGCGTGTATGTGTCGTTACCGCCAATCAATCCCTCTGCAG
GAGAAGGCGGCGGATGGGGAGGAGGAGGCCGCGAGAAGGAAGGAGAAGAG
GAAGATGAAGAAGGAGAAGGAGAAGAAGCAGGGCAAGGCTAAGGCGCAGG
GTGTTCGCGAGGAGGCCAGGCAGCTCCAGGAGAAGCTGGGGCTGGACGAT
CCACAGCGCACGCCGCAGGTCACTCTCTTTTGTAATTATTGTGCCGTCCC
AACAACCTAAGGTGGGGACCTCACCAGAAGCCCTTCTTTTCACCCGCAGG
GCACAAAACAAAGAAAATAAGCCATGCCGCAGGTCACTCTCTTGTTTGAA
CCAGTGATGTTCTATCGATCAGTGGATAGTTACTGGGCTCGACTGATTTT
TTGGGTGGCGCTACTAACCACTTGGATTTAGTGTGGGTCAAACTATCGGA
TATCGACTGTCGTGGGTCACACTGTCAAATATCGAGTATCGATAGATGTA
CTCGTACAATCTAGTACTGTCGACAAATAGGTTGATTTGCTTGGATATGC
CATCTCTTGGTTGAACGCTCCCCCCGAGAGTTCCGCCGCCTTGCCGCCGG
CATATATATACATATATATATATATATATGTATCGGCATATATATATATA
TATATGTATATATATGTACTCATTGGCTTGTCTTGCGACACAACCTTGCG
TGCAATGGCGACACCCCTGAAGTCGAAACTTCGGTATATAGGACGCAAAC
TTCCCGCCGCGGCCAGTGTATTGAGACTGCACGCATTTGCTGATGACTGG
CCGAATTCGCCCGCAATCCTGACGCACCAAATCAGTCAGGCATGGGTATG
TACTCTCAACATGTTGACTGCGGCGGAAAGGTTTGCTTTTCGGGACAGTA
GTTTTTGGCAAGAAGATAACAAGCGAGTGGGAAAGAAGAGGTGTTCCTAC
TTACGCGAGTTCAGGGCCCCCTCCCCGGAAGCCCGTCTTTTCGCTCGCCG
TCACTCGCAGGGCACACAAGGCATAAAAACAAAGAAAAACAAAGGGACGG
CAGTTCCGCAAGGCCCGGGAATTCTCGCGAGGCTTGAGTCCTCTTGGACT
CCGTGTCTCAGGGCCCGTCGCGGGTCGATCAGCTAACTCTGTTCTTTTGG
CACGACTCGCTTGGCGTTAGTGACGTGGCCAGCGCCTCGCCCTGTGTTAT
CATACCCTGCTACGTGCTGCTCTGTCTCAAACGAGGCGCGTGGTCAATGG
TCTCGGGACTACGGCAAGCACCACGTGAGTACTTCGAAGTATATAGTACG
AAGTATGTACAACAAACAGCTCGCACATTTCTTTTGGGACTACGGCAAGC
ACAGCGTGTATGTGTGCTTGTGTGTGTGTGTACTCACGTTTGGACGAGGT
TTCTCGTCGCGAATGCCCTGGACCTGAACGTCCTCATCTTTGCTCAGTCT
TTGCACATTGTGTGTGCTCGGGTGCTTCAAGTGCTTCGAAGTACTTGTAC
AGTACTGTACGTGCATTTCCTCGCCTTGACTGGTCGCACCCCGGTATGGC
CGCGCCGTGCACCCACCCCATGTCATCAGGCGGGGGAAAAGCTGGCGGAG
TTCTACGCTCGCACGGCGTCCACCTGGACCGCTGAGCACGTGCAGCGGCT
GCAAGCCTCCGCCCAGGAGACGGGGCCGCTGCAGGAGAAGGAGGTGGGTG
CGTGGTATGTTGCTTCTTTGCCTGATTTTTGTTCCCTGCGGGCGAGAAGA
AGGGCTTCCGGTGAGGTACGCACCCAAGGTGGTTGGGACGGGGCCTGGAA
CTCGCATGCAAACGAATAGTTTAAAAAGGAGGTGGGTGCGTGGTATGTAC
TGTGTGTGTATACTCGCCTCTCACAGGGGACACCCCCGTCCTGTGCATGC
GACCGACCATCGGCCCAGTGTGCTACCGTACTTGCTGTGGACCGCTGGCC
AGCCCCCGTGGGGTAGGCTTTCGGCCGTTGGCCTCGCGTCCCTGCTTTTG
CCGGGACGGAGCATACCGGGTTCTCACCTCCTTGGCCAGGCGTGTACTAG
ACTAGTACACGGTGTCTAGTATACCTACTTCCAAGCATATTATATCAGAC
TGCTCCGCCGTCAACGGCACGTGGCCAATGGTCTCGGAACTACAGCAACC
ATAACGTGCGTACATATATATACTTCGAAGTATACGTACTCGAGTATCAG
GTACGGGGGGGGGGATGGAAATGGCCACACCTCTGCCCCTGCCCTCTCCC
TCCCGTCCTGGCTCTGCCACCTGGGGGAGGGAGGGGGGTTGCTCCGTCTT
GGTCGAGGCGCGATAGTGGCCAATGGCTCGGGGCAGCAAGCACAGCACGA
AAAAATATATGCAAACATATATGGTCGAAAACCAATTGGCGTGAGTGCAT
GTACTTCGTATGTACTCATTGGCTTGTCTTGCTACGTAAGCTTGCGTTCT
TAGCCGACATCCATGAAGTCTAAATAGGGTTTGCCCTCCGACAGGGTAGC
TATTTAGCCATGGCCTCTCGCATCCCTACTAGGTCAGGGTGTATACAGTA
TATATATATATATGCGCGTGGTCAATGTTCTCGGGACAAGCACAACGTGA
GTACATGTACTTCGTATATGTATGGTCGAAAACCATTGGCTGCTGATTTA
TGATCTGCGAGTGCCGTATTTTAGGCATGTACCCCAGCGGGACATCTTCC
TGGGAGAGTGTTTTCTCAACGGGTAGGTCCCGAGTCGTCATCCCGAGAGG
GGATGTGATGTGATGTCAACAAACTACTGTAGACTAGAGTATTGTACACA
TCACATCACATCACATCGATCACATTAATCGCATCAATCCGTGTTTTCTG
TTTCGGGCGGCAGCTCCGGAAGGGGGGCTTCGCGCTGGCCCAGGCGCGCT
TCGAGGAGCTCCTGCCGGTGCTGAACCGCCTCAACGAGCTGGAGGGCATA
CAGAAGGACATGGAGAGCCGCGAGGCAGAGCGGAGAGGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3826892..3832281+

>mRNA_S-ischiensis_contig8.19774.1 ID=mRNA_S-ischiensis_contig8.19774.1|Name=mRNA_S-ischiensis_contig8.19774.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig8:3826892..3832281+ (Schizocladia ischiensis KU_0333)
gGGGAGGCGGACGGGGCGACCACCGAGGGGAAGGAAGGCGCCCCGGCTCT
CCCTTTGCCTCGCATCAACCCGTGCCTGACGGTGCGGGGCAACACCCTGT
ACGTCTACGGCGGGCTTCTGGAGgGGGAGGCGGACGGGGCGACCACCGAG
GGGAAGGAAGGCGCCCCGGCTCTCCCTTTGCCTCGCATCAACCCGTGCCT
GACGGTGCGGGGCAACACCCTGTACGTCTACGGCGGGCTTCTGGAGGTCG
GTGACCGCGAGTACACCCTAGACGACTGCTGGGCGTTGGACCTCAACACG
CGCCGGGAGTGGAGGTCGGTGACCGCGAGTACACCCTAGACGACTGCTGG
GCGTTGGACCTCAACACGCGCCGGGAGTGGAGGTGCGTGCAGGAGGGCAC
CATGGACCAGCGGGAGTGGCTGGGCGAGGACGACGACGGCGCGTCCGAGC
GGACCAGCGAGGGGGGCTACGGCGACAGCGACAGCGATGACGACGACGAG
GAGGGCGAGGAAGAGGAGGAGGAGGAGGAGGAGGACGATGAAGAGGAAGA
TGGCGAGGAGGACGAGGAGAAGGAGGAGGGGGGCAGGGATGAGGTGCGTG
CAGGAGGGCACCATGGACCAGCGGGAGTGGCTGGGCGAGGACGACGACGG
CGCGTCCGAGCGGACCAGCGAGGGGGGCTACGGCGACAGCGACAGCGATG
ACGACGACGAGGAGGGCGAGGAAGAGGAGGAGGAGGAGGAGGAGGACGAT
GAAGAGGAAGATGGCGAGGAGGACGAGGAGAAGGAGGAGGGGGGCAGGGA
TGAGAGGAAGATGAAGAAGGAGAAGGAGAAGAAGCAGGGCAAGGCTAAGG
CGCAGGGTGTTCGCGAGGAGGCCAGGCAGCTCCAGGAGAAGCTGGGGCTG
GACGATCCACAGCGCACGCCGCAGAGGAAGATGAAGAAGGAGAAGGAGAA
GAAGCAGGGCAAGGCTAAGGCGCAGGGTGTTCGCGAGGAGGCCAGGCAGC
TCCAGGAGAAGCTGGGGCTGGACGATCCACAGCGCACGCCGCAGGCGGGG
GAAAAGCTGGCGGAGTTCTACGCTCGCACGGCGTCCACCTGGACCGCTGA
GCACGTGCAGCGGCTGCAAGCCTCCGCCCAGGAGACGGGGCCGCTGCAGG
AGAAGGAGGCGGGGGAAAAGCTGGCGGAGTTCTACGCTCGCACGGCGTCC
ACCTGGACCGCTGAGCACGTGCAGCGGCTGCAAGCCTCCGCCCAGGAGAC
GGGGCCGCTGCAGGAGAAGGAGCTCCGGAAGGGGGGCTTCGCGCTGGCCC
AGGCGCGCTTCGAGGAGCTCCTGCCGGTGCTGAACCGCCTCAACGAGCTG
GAGGGCATACAGAAGGACATGGAGAGCCGCGAGGCAGAGCGGAGAGGCCT
CCGGAAGGGGGGCTTCGCGCTGGCCCAGGCGCGCTTCGAGGAGCTCCTGC
CGGTGCTGAACCGCCTCAACGAGCTGGAGGGCATACAGAAGGACATGGAG
AGCCGCGAGGCAGAGCGGAGAGGC
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