mRNA_S-ischiensis_contig8.19623.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19623.1
Unique NamemRNA_S-ischiensis_contig8.19623.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A1H3YGB7_9EURY (Transitional endoplasmic reticulum ATPase n=1 Tax=Haloplanus vescus TaxID=555874 RepID=A0A1H3YGB7_9EURY)

HSP 1 Score: 81.6 bits (200), Expect = 1.160e-15
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAREA 249
            +G T+  + L P L R GR DR +++G  GV GRR  L V  R V ++ +VDLD LA R HGF+GADLE+LVTEA M   R A
Sbjct:  337 IGATNRVDDLDPALRRGGRFDREIEIGVPGVAGRREILDVHTRRVPMTEDVDLDRLASRTHGFVGADLESLVTEAAMSALRRA 419          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A345EG63_9EURY (AAA family ATPase n=3 Tax=Haloplanus TaxID=376170 RepID=A0A345EG63_9EURY)

HSP 1 Score: 80.1 bits (196), Expect = 4.010e-15
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAREA 249
            +G T+  + L P L R GR DR +++G  GV GRR  L V  R V ++  VDLD LA R HGF+GADLE+LVTEA M   R A
Sbjct:  346 IGATNRVDDLDPALRRGGRFDREIEIGVPGVAGRREILDVHTRRVPMTDGVDLDRLASRTHGFVGADLESLVTEAAMSALRRA 428          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A897ND07_9EURY (ATPase of the AAA+ class, CDC48 family n=3 Tax=Halapricum desulfuricans TaxID=2841257 RepID=A0A897ND07_9EURY)

HSP 1 Score: 79.0 bits (193), Expect = 1.010e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAR 243
            +G T+  + + P L R GR DR +++G  GV+GRR  L V  R + L+ +VDLD LAER HGF+GAD+E+L TEA M   R
Sbjct:  328 IGATNRVDAVDPALRRGGRFDREIEIGVPGVKGRREILDVHTRGMPLADDVDLDRLAERTHGFVGADIESLTTEAAMHALR 408          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: UPI001CF02D9E (AAA family ATPase n=1 Tax=Natrinema sp. SLN56 TaxID=2878535 RepID=UPI001CF02D9E)

HSP 1 Score: 79.0 bits (193), Expect = 1.020e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAR 243
            +G T+ PE L P L RSGR DR +++G    +GR   LR+L R + L+ +VD+ +LAER HGF+GADLE L+ EA +   R
Sbjct:  327 IGTTTQPETLDPALRRSGRFDREIEIGVPDRDGREEILRILTRGMPLAADVDIASLAERTHGFVGADLEILIREAALHTLR 407          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A897NQM9_9EURY (ATPase of the AAA+ class, CDC48 family n=1 Tax=Halapricum desulfuricans TaxID=2841257 RepID=A0A897NQM9_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 1.890e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAR 243
            +G T+  + + P L R GR DR +++G  GV+GRR  L V  R + L+ +VDLD +AER HGF+GAD+E+L TEA M   R
Sbjct:  331 IGATNRVDAVDPALRRGGRFDREIEIGVPGVDGRREILDVHTRGMPLAADVDLDRIAERTHGFVGADVESLTTEAAMHALR 411          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A2R6JID0_9EURY (AAA family ATPase n=1 Tax=Halobacteriales archaeon QS_8_69_26 TaxID=1919187 RepID=A0A2R6JID0_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-14
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGME 234
            +G T+  + L P L R GR DR +++G    EGR+  L V  R + L+P+V LD LAER HGF+GAD+ A+VTEA ME
Sbjct:  333 IGATNRVDTLDPALRRGGRFDREIEIGVPDEEGRKEILEVETRNMNLAPDVSLDGLAERTHGFVGADIHAMVTEAAME 410          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A368NCN1_9EURY (AAA family ATPase n=2 Tax=Haloplanus TaxID=376170 RepID=A0A368NCN1_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-14
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAREA 249
            +G T+  + L P L R GR DR +++G  GV GRR  L V  R V ++ +V LD LA R HGF+GADLE+LVTEA M   R A
Sbjct:  338 IGATNRVDDLDPALRRGGRFDREIEIGVPGVAGRREILDVHTRRVPMTDDVALDRLAARTHGFVGADLESLVTEAAMSALRRA 420          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: M0NQF2_9EURY (Uncharacterized protein n=1 Tax=Halorubrum lipolyticum DSM 21995 TaxID=1227482 RepID=M0NQF2_9EURY)

HSP 1 Score: 78.2 bits (191), Expect = 1.910e-14
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECAREAWAAMA 264
            VG T+  + + P L R GR DR +++G    +GR+  L V  R +R+S  VDLD  AE  HGF+GADLE+LVTEA M   R  W  +A
Sbjct:  335 VGTTNDVDAIDPALRRPGRFDREIEIGVPDRDGRKEILEVHTRGLRVSDGVDLDAYAENTHGFVGADLESLVTEASMNAIRRVWPDLA 422          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: UPI001C4D3B03 (cell division cycle protein 48 homolog n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D3B03)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGMECARE 246
            +G T+ P  + P L R GR DR +D+G     GR   LR+  + ++LS +VDL+ +A+  HG++GADL AL TEA ++C RE
Sbjct:   13 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSNDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 94          
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Match: A0A1Y1UTN8_9TREE (Helicase n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UTN8_9TREE)

HSP 1 Score: 77.8 bits (190), Expect = 2.590e-14
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPEVDLDTLAERLHGFMGADLEALVTEAGM 231
            +G T+ P+ L P L R+GR D  +++G   +EGR   LRVL R +RLS E D   LA+R  G++GADL ALVTEAG+
Sbjct:  243 IGATNRPDALDPALRRAGRFDHEIEMGVPSIEGREEILRVLCRDLRLSDETDFRDLAKRTPGYVGADLTALVTEAGV 319          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H3YGB7_9EURY1.160e-1551.81Transitional endoplasmic reticulum ATPase n=1 Tax=... [more]
A0A345EG63_9EURY4.010e-1551.81AAA family ATPase n=3 Tax=Haloplanus TaxID=376170 ... [more]
A0A897ND07_9EURY1.010e-1449.38ATPase of the AAA+ class, CDC48 family n=3 Tax=Hal... [more]
UPI001CF02D9E1.020e-1448.15AAA family ATPase n=1 Tax=Natrinema sp. SLN56 TaxI... [more]
A0A897NQM9_9EURY1.890e-1448.15ATPase of the AAA+ class, CDC48 family n=1 Tax=Hal... [more]
A0A2R6JID0_9EURY1.900e-1450.00AAA family ATPase n=1 Tax=Halobacteriales archaeon... [more]
A0A368NCN1_9EURY1.900e-1450.60AAA family ATPase n=2 Tax=Haloplanus TaxID=376170 ... [more]
M0NQF2_9EURY1.910e-1446.59Uncharacterized protein n=1 Tax=Halorubrum lipolyt... [more]
UPI001C4D3B032.500e-1443.90cell division cycle protein 48 homolog n=2 Tax=Zin... [more]
A0A1Y1UTN8_9TREE2.590e-1450.65Helicase n=1 Tax=Kockovaella imperatae TaxID=4999 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2619148..2619946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score82.8
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog926690.KE386573_gene1108
Preferred namecdc48c
KEGG koko:K13525
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
EggNOG free text desc.COG0464 ATPases of the AAA class
EggNOG OGs23TCH@183963,2XTZ8@28890,COG0464@1,arCOG01308@2157
Ec32 ortholog descriptionputative; AAA family ATP ase
Ec32 orthologEc-24_004440.3
COG Functional cat.O
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.3037915-CDS-S-ischiensis_contig8:2619147..26193511622817293.3037915-CDS-S-ischiensis_contig8:2619147..2619351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2619148..2619351 -
1695741002.2820382-CDS-S-ischiensis_contig8:2619147..26193511695741002.2820382-CDS-S-ischiensis_contig8:2619147..2619351Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2619148..2619351 -
1622817293.320107-CDS-S-ischiensis_contig8:2619796..26199461622817293.320107-CDS-S-ischiensis_contig8:2619796..2619946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2619797..2619946 -
1695741002.2963588-CDS-S-ischiensis_contig8:2619796..26199461695741002.2963588-CDS-S-ischiensis_contig8:2619796..2619946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2619797..2619946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19623.1prot_S-ischiensis_contig8.19623.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2619148..2619946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19623.1

>prot_S-ischiensis_contig8.19623.1 ID=prot_S-ischiensis_contig8.19623.1|Name=mRNA_S-ischiensis_contig8.19623.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=118bp
VGVTSVPEHLHPCLTRSGRLDRRVDLGPLGVEGRRAALRVLARPVRLSPE
VDLDTLAERLHGFMGADLEALVTEAGMECAREAWAAMATAAAAAGGCDDS
GAGNGGGGGGGGGGGSVG
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mRNA from alignment at S-ischiensis_contig8:2619148..2619946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19623.1 ID=mRNA_S-ischiensis_contig8.19623.1|Name=mRNA_S-ischiensis_contig8.19623.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=799bp|location=Sequence derived from alignment at S-ischiensis_contig8:2619148..2619946- (Schizocladia ischiensis KU_0333)
GTGGGGGTGACCAGCGTCCCCGAGCACCTCCACCCCTGCCTCACCCGATC GGGCCGCCTGGACCGCCGGGTGGACCTGGGGCCCTTGGGTGTGGAGGGGC GGCGGGCGGCCCTGCGGGTGCTGGCGCGGCCCGTGCGGCTGTCCCCGGAG GTGAGTGTGTGTGTGTGTGTGTGTATGTGCGCGTGTGTGTGCCATGTGAT TTGACAGGATGGGATGGGACGGGATGGGATGGGATGGGATGATGAGATGG AAGGTGTATTCGCGTACGAAAGCACGGCACAGTATTGTGGTGTGACATCA CGTCACATCGCGTGATATCTGCGGCGTGTGTACGTGTGTCCATGCGTGTG TATGTATGTCCCTGTGTGTGTGCGCGCGCGCTCGTGCGTGTGCAACGTGT GCGCTCATGTGTGCGTGAGTGGGGTTACGTACGCTCGGCCTCATCCAGCC AACGGTACAAACTGCCCCCTCTGCCAGCTCCCCCCCCCCCCACACACACA CATCTCCACCCTCCCTCCTGCCTCTTCTATTCCCGCCCTCCCACACCATG GCCTTGGCCTAACACCATAACCTAAAATGCCTTCCATGTGACAAGGTGGA CCTCGACACGCTGGCCGAGCGCCTGCATGGTTTCATGGGGGCCGACCTGG AAGCCCTGGTGACCGAGGCTGGGATGGAGTGCGCTCGCGAGGCCTGGGCG GCTATGGCCACTGCAGCAGCTGCTGCTGGCGGCTGTGACGACAGCGGCGC CGGCAATGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGTTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2619148..2619946-

>mRNA_S-ischiensis_contig8.19623.1 ID=mRNA_S-ischiensis_contig8.19623.1|Name=mRNA_S-ischiensis_contig8.19623.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=708bp|location=Sequence derived from alignment at S-ischiensis_contig8:2619148..2619946- (Schizocladia ischiensis KU_0333)
GTGGGGGTGACCAGCGTCCCCGAGCACCTCCACCCCTGCCTCACCCGATC
GGGCCGCCTGGACCGCCGGGTGGACCTGGGGCCCTTGGGTGTGGAGGGGC
GGCGGGCGGCCCTGCGGGTGCTGGCGCGGCCCGTGCGGCTGTCCCCGGAG
GTGGGGGTGACCAGCGTCCCCGAGCACCTCCACCCCTGCCTCACCCGATC
GGGCCGCCTGGACCGCCGGGTGGACCTGGGGCCCTTGGGTGTGGAGGGGC
GGCGGGCGGCCCTGCGGGTGCTGGCGCGGCCCGTGCGGCTGTCCCCGGAG
GTGGACCTCGACACGCTGGCCGAGCGCCTGCATGGTTTCATGGGGGCCGA
CCTGGAAGCCCTGGTGACCGAGGCTGGGATGGAGTGCGCTCGCGAGGCCT
GGGCGGCTATGGCCACTGCAGCAGCTGCTGCTGGCGGCTGTGACGACAGC
GGCGCCGGCAATGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGT
TGGCGTGGACCTCGACACGCTGGCCGAGCGCCTGCATGGTTTCATGGGGG
CCGACCTGGAAGCCCTGGTGACCGAGGCTGGGATGGAGTGCGCTCGCGAG
GCCTGGGCGGCTATGGCCACTGCAGCAGCTGCTGCTGGCGGCTGTGACGA
CAGCGGCGCCGGCAATGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCA
GCGTTGGC
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